View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20652_high_5 (Length: 338)
Name: NF20652_high_5
Description: NF20652
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20652_high_5 |
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Alignment Details
Target: chr4 (Bit Score: 235; Significance: 1e-130; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 235; E-Value: 1e-130
Query Start/End: Original strand, 15 - 310
Target Start/End: Complemental strand, 26723072 - 26722781
Alignment:
| Q |
15 |
gatcttgataggagaactttctatagaatcgtgcctcaatcatccatttccactggttatatggtcttgatgcataaataagtatgcaatcctacacctg |
114 |
Q |
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| T |
26723072 |
gatcttgacaggagaactttctatagaatcgtgcctcaaccatccacttccactggttatatggtcttgatgcataaataagtatgcaatcccacacatg |
26722973 |
T |
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| Q |
115 |
ttgccgtaatcgtcgaccaagactactgcagtagctttcttgtccaagattgattgacaaaatccctcatatgccaacatcttcaaaaataaattagatc |
214 |
Q |
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| T |
26722972 |
ttgccataatcatcgaccaagactactgcagtagctttcttgtccaagattgattgacaaaa----tcatatgccaacatcttcaaaaataaattagatc |
26722877 |
T |
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| Q |
215 |
ttaagtatatgcatcgtatgcaccaaaatatttatatatttgttcataaattaacttaacaaaaatcaaaagataacatcatatgtggtttcttct |
310 |
Q |
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| T |
26722876 |
gtgagtatatgcatcgtatgcaccaaaatatttatatatttgttcataaattaacttaccaaaaatcaaaagataacttcatatgtggtttcttct |
26722781 |
T |
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Target: chr5 (Bit Score: 78; Significance: 3e-36; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 78; E-Value: 3e-36
Query Start/End: Original strand, 158 - 295
Target Start/End: Original strand, 26837708 - 26837845
Alignment:
| Q |
158 |
ccaagattgattgacaaaatccctcatatgccaacatcttcaaaaataaattagatcttaagtatatgcatcgtatgcaccaaaatatttatatatttgt |
257 |
Q |
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||||| ||||| |||||||||||||||| |||||||||||||||||||||||||| | || ||||||||||||||||||||||||||||||||||||| |
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| T |
26837708 |
ccaagtttgatggacaaaatccctcataagccaacatcttcaaaaataaattagaaagtgagaatatgcatcgtatgcaccaaaatatttatatatttgt |
26837807 |
T |
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| Q |
258 |
tcataaattaacttaacaaaaatcaaaagataacatca |
295 |
Q |
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| T |
26837808 |
ttatgaattagctcatcaaaaattcaaagataacatca |
26837845 |
T |
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