View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20653_low_1 (Length: 258)
Name: NF20653_low_1
Description: NF20653
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20653_low_1 |
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| [»] chr7 (2 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 258; Significance: 1e-144; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 258; E-Value: 1e-144
Query Start/End: Original strand, 1 - 258
Target Start/End: Original strand, 38942701 - 38942958
Alignment:
| Q |
1 |
tctataattttgatgcgaatctggacaacaaattaaaacaaaaaacatactctgtggagagttccatgctcagcactgagtcttagccacctgagagctg |
100 |
Q |
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| T |
38942701 |
tctataattttgatgcgaatctggacaacaaattaaaacaaaaaacatactctgtggagagttccatgctcagcactgagtcttagccacctgagagctg |
38942800 |
T |
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| Q |
101 |
ggaggtcgaagctggtgatagttttgattctaccagcttgagggttgtagatgtcaggtgatgaagatgagaccatgttctggtgaagcctggcagtgca |
200 |
Q |
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| T |
38942801 |
ggaggtcgaagctggtgatagttttgattctaccagcttgagggttgtagatgtcaggtgatgaagatgagaccatgttctggtgaagcctggcagtgca |
38942900 |
T |
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| Q |
201 |
aattgtttccgcaagaccgttgtgcctttctctttctcttctgcttttctgatgatgt |
258 |
Q |
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| T |
38942901 |
aattgtttccgcaagaccgttgtgcctttctctttctcttctgcttttctgatgatgt |
38942958 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 119; E-Value: 7e-61
Query Start/End: Original strand, 52 - 222
Target Start/End: Original strand, 38950188 - 38950358
Alignment:
| Q |
52 |
ctgtggagagttccatgctcagcactgagtcttagccacctgagagctgggaggtcgaagctggtgatagttttgattctaccagcttgagggttgtaga |
151 |
Q |
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| T |
38950188 |
ctgtggagagttccatgttcagcactgagtctgagccaccttagagctgggaggtcaaagctggtgacagttttgattctaccagcttcagggttgtaga |
38950287 |
T |
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| Q |
152 |
tgtcaggtgatgaagatgagaccatgttctggtgaagcctggcagtgcaaattgtttccgcaagaccgttg |
222 |
Q |
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| T |
38950288 |
tgtcaggtgatgaagatgagccaatgttctggcgaagtctagcggtgcaaattgtttcctcaagaccgttg |
38950358 |
T |
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