View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20653_low_2 (Length: 250)
Name: NF20653_low_2
Description: NF20653
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20653_low_2 |
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Alignment Details
Target: chr7 (Bit Score: 185; Significance: 1e-100; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 185; E-Value: 1e-100
Query Start/End: Original strand, 10 - 227
Target Start/End: Complemental strand, 38942454 - 38942241
Alignment:
| Q |
10 |
caatgataatgccgcgattgccaggcttgctgggacacaatccactctaagtggtatgccagtggatgtgcttgcagctacattcaacatggacaggaat |
109 |
Q |
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| T |
38942454 |
caatgataatgccgcaattgccaggcttgcagggacacaatccactctaagtggtatgccagtggatgtgcttgcagctacattcaacatggacaggaat |
38942355 |
T |
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| Q |
110 |
gaggcaaggcagctcaaaatcaacaatctctttaaatttctagttccaccccgtgagtccgaacgcagagctgcagcttagaaacaaacaaacactgttt |
209 |
Q |
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||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||| |
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| T |
38942354 |
gaggcaaggcagctcaaaaacaacaatctctttaaatttctagttccaccccgtgagtccgaacgcagagctgcagcttagaaaca----aacaccgttt |
38942259 |
T |
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| Q |
210 |
ctaaggctttttgcatgc |
227 |
Q |
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|||||||||||||||||| |
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| T |
38942258 |
ctaaggctttttgcatgc |
38942241 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 140; E-Value: 2e-73
Query Start/End: Original strand, 10 - 189
Target Start/End: Complemental strand, 38949890 - 38949711
Alignment:
| Q |
10 |
caatgataatgccgcgattgccaggcttgctgggacacaatccactctaagtggtatgccagtggatgtgcttgcagctacattcaacatggacaggaat |
109 |
Q |
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|||||||||||| || ||||| |||||||| |||||||||||||||||||||||| ||||| ||||||||||||||||||||| |||||||||||||||| |
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| T |
38949890 |
caatgataatgctgccattgctaggcttgcagggacacaatccactctaagtggtgtgccaatggatgtgcttgcagctacatacaacatggacaggaat |
38949791 |
T |
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| Q |
110 |
gaggcaaggcagctcaaaatcaacaatctctttaaatttctagttccaccccgtgagtccgaacgcagagctgcagctta |
189 |
Q |
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||||||||||||||||| | ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38949790 |
gaggcaaggcagctcaagaacaacaatctctataaatttctagttccaccccgtgagtccgaacgcagagctgcagctta |
38949711 |
T |
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