View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20653_low_3 (Length: 214)
Name: NF20653_low_3
Description: NF20653
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20653_low_3 |
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Alignment Details
Target: chr5 (Bit Score: 138; Significance: 3e-72; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 138; E-Value: 3e-72
Query Start/End: Original strand, 32 - 197
Target Start/End: Complemental strand, 18948086 - 18947921
Alignment:
| Q |
32 |
aataaaaaagaaataatgccatatggaatgtgaaaactagagtccgtctccatacccaaacatgtccattcaagccaactgctatctcgaacgagagttt |
131 |
Q |
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||||||||||||||||| | |||||||||||| ||||||||| |||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
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| T |
18948086 |
aataaaaaagaaataatacaatatggaatgtgtaaactagaggtcgtctccatacccaaacacgtccattcaagccaactgctatctcgaacgagagttt |
18947987 |
T |
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| Q |
132 |
cttccctaaagtatcaagtacaggacatgtgggtgtgctgagaagcctacaaacaacgtacaactt |
197 |
Q |
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| T |
18947986 |
cttccctaaagtatcaagtacaggacatgtgggtgtgctgagaagcctacaaacaacatacaactt |
18947921 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 82; E-Value: 7e-39
Query Start/End: Original strand, 77 - 194
Target Start/End: Original strand, 2253062 - 2253179
Alignment:
| Q |
77 |
gtctccatacccaaacatgtccattcaagccaactgctatctcgaacgagagtttcttccctaaagtatcaagtacaggacatgtgggtgtgctgagaag |
176 |
Q |
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|||| |||||| ||||| ||||||| ||||||||||||||||||||||||||||||||||| |||||||||||||| |||||||||||||||||||||| |
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| T |
2253062 |
gtctgcataccgaaacacgtccatttaagccaactgctatctcgaacgagagtttcttcccaaaagtatcaagtaccggacatgtgggtgtgctgagaac |
2253161 |
T |
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| Q |
177 |
cctacaaacaacgtacaa |
194 |
Q |
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|||||||| ||| ||||| |
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| T |
2253162 |
cctacaaataacatacaa |
2253179 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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