View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20654_high_12 (Length: 416)
Name: NF20654_high_12
Description: NF20654
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20654_high_12 |
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Alignment Details
Target: chr8 (Bit Score: 233; Significance: 1e-128; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 233; E-Value: 1e-128
Query Start/End: Original strand, 148 - 400
Target Start/End: Complemental strand, 39991294 - 39991042
Alignment:
| Q |
148 |
agcatttatatcaatagcctatgggagagaaagaaaatttcattattttgtttcctcctttcgtttacacttcacttttttaaagtctatttcataccaa |
247 |
Q |
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| T |
39991294 |
agcatttatatcaatagcctatgggagagaaagaaaatttcattcttttgtttcctccttttgtttacacttcacttttttaaagtctatttcataccaa |
39991195 |
T |
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| Q |
248 |
tttgtttcctctttatggtggagcattgagactgattaagcaatatcggtgcacccagtgtcttgttcttaacccctctttgtggtttcgctacaaagaa |
347 |
Q |
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|||||||||||||||||||| |||| |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
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| T |
39991194 |
tttgtttcctctttatggtgaagcactgagactgattaagcaatatcggtgcacccagtgtcttgttcttaacctctctttgtggtttcgctacaaagaa |
39991095 |
T |
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| Q |
348 |
atttgatttctgtattttgagttttaatgcaggtctaataatgggggcttcat |
400 |
Q |
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| T |
39991094 |
atttgatttctgtattttgagttttaatgcaggtctaataatgggggcttcat |
39991042 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 130; E-Value: 3e-67
Query Start/End: Original strand, 1 - 150
Target Start/End: Original strand, 39991262 - 39991411
Alignment:
| Q |
1 |
ctttctctcacataggctattgatataaatgctaaacaaatcaattcgattgtacaaacactcaatcaagcagcaatttgtacaggttgaaattttaatg |
100 |
Q |
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||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39991262 |
ctttctctcccataggctattgatataaatgctcgacaaatcaattcgattgtacaaacactcaatcaagcagcaatttgtacaggttgaaattttaatg |
39991361 |
T |
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| Q |
101 |
aaattaaaataacaaacaaattcttgttgcatactactattaacaaaagc |
150 |
Q |
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| T |
39991362 |
aaattaaaataacaaacaaattctttttgcacactactattaacaaaagc |
39991411 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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