View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20654_high_15 (Length: 406)
Name: NF20654_high_15
Description: NF20654
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20654_high_15 |
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Alignment Details
Target: chr7 (Bit Score: 370; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 370; E-Value: 0
Query Start/End: Original strand, 10 - 387
Target Start/End: Complemental strand, 45370935 - 45370558
Alignment:
| Q |
10 |
tgcagatgagcaaatcacaaatcagcaactccactcaacttcttatgtcaagtgaaatttttgtcctgccgaaaaaacgaaccaaatcaaatttcatcta |
109 |
Q |
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| T |
45370935 |
tgcagatgagcaaatcacaaatcagcaactccactcaacttcttatgtcaagtgaaatttttgtcctgccgaaaaaacgaaccaaatcaaatttcatcta |
45370836 |
T |
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| Q |
110 |
tgaagtacactatggtatgataatgctataaactccacaatttaccaagacataaaccaagcacctctgttttgattatttgaactttgttggtgatttg |
209 |
Q |
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| T |
45370835 |
tgaagtacactatggtatgataatgctataaactccacaatttaccaagacataaaccaagcacctctgttttgattatttgaactttgtcggtgatttg |
45370736 |
T |
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| Q |
210 |
acaaatagtaacagtctgaacaatggtcggggaatatcctctccttgagcggctcacaagcttccggaaaaaccatgtcagagtatcctctaatgttaga |
309 |
Q |
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| T |
45370735 |
acaaatagtaacagtctgaacaatggtcggggaatatcctctccttgagcggctcacaagcttccggaaaaaccatgtcagagtatcctctaatgttaga |
45370636 |
T |
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| Q |
310 |
gcagttccatggatagtttgagctcacattgagggtgatgtttgataagcatatgttgacaaaattgtcaccttctat |
387 |
Q |
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| T |
45370635 |
gcagttccatggatagtttgagctcacattgagggtgatgtttgataagcatatgttgacgaaattgtcaccttctat |
45370558 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 51; Significance: 4e-20; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 217 - 383
Target Start/End: Original strand, 38485014 - 38485180
Alignment:
| Q |
217 |
gtaacagtctgaacaatggtcggggaatatcctctccttgagcggctcacaagcttccggaaaaaccatgtcagagtatcctctaatgttagagcagttc |
316 |
Q |
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|||||||| |||| ||| || || ||||| ||||| ||||| ||||||||| ||||||| |||||| |||||||||||| ||| || ||||||||| |
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| T |
38485014 |
gtaacagtttgaaacatgatcaggaaatattctctcattgagttgctcacaagattccggagaaaccaattcagagtatcctttaacgtccgagcagttc |
38485113 |
T |
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| Q |
317 |
catggatagtttgagctcacattgagggtgatgtttgataagcatatgttgacaaaattgtcacctt |
383 |
Q |
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||||||| |||| ||||||||| || |||||||||||||| || || | ||||| |||||||||| |
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| T |
38485114 |
catggattgtttttgctcacattaagagtgatgtttgataaacagatatcaacaaagttgtcacctt |
38485180 |
T |
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