View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20654_high_22 (Length: 321)

Name: NF20654_high_22
Description: NF20654
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20654_high_22
NF20654_high_22
[»] chr6 (67 HSPs)
chr6 (11-297)||(26802201-26802490)
chr6 (12-295)||(27724986-27725267)
chr6 (22-295)||(27698635-27698906)
chr6 (11-295)||(27228997-27229278)
chr6 (11-295)||(27718520-27718803)
chr6 (11-297)||(28786041-28786326)
chr6 (11-297)||(28780902-28781187)
chr6 (31-295)||(27611143-27611406)
chr6 (11-295)||(27604846-27605135)
chr6 (11-297)||(26655752-26656037)
chr6 (11-297)||(26761723-26762008)
chr6 (33-297)||(28792184-28792447)
chr6 (71-297)||(27338204-27338430)
chr6 (71-297)||(27398944-27399170)
chr6 (131-280)||(27531353-27531502)
chr6 (111-297)||(26884025-26884211)
chr6 (85-297)||(27593159-27593371)
chr6 (85-297)||(31284124-31284336)
chr6 (85-297)||(27678782-27678994)
chr6 (79-280)||(26622806-26623007)
chr6 (104-297)||(26646334-26646527)
chr6 (79-280)||(26728784-26728985)
chr6 (104-297)||(26752302-26752495)
chr6 (85-297)||(27677753-27677965)
chr6 (143-297)||(25481636-25481790)
chr6 (143-297)||(25579613-25579767)
chr6 (143-297)||(26142759-26142913)
chr6 (11-297)||(26823609-26823888)
chr6 (16-247)||(27427792-27428020)
chr6 (85-297)||(27706541-27706753)
chr6 (143-297)||(26055820-26055974)
chr6 (143-297)||(26075790-26075944)
chr6 (87-297)||(26861454-26861664)
chr6 (143-297)||(25538434-25538588)
chr6 (143-274)||(26048739-26048870)
chr6 (143-274)||(26069908-26070039)
chr6 (126-297)||(28234441-28234612)
chr6 (111-297)||(28325343-28325529)
chr6 (105-297)||(28185222-28185414)
chr6 (103-209)||(28098596-28098702)
chr6 (105-297)||(28180970-28181162)
chr6 (180-280)||(29825958-29826058)
chr6 (126-297)||(26893610-26893781)
chr6 (144-297)||(26635585-26635738)
chr6 (144-297)||(26741551-26741704)
chr6 (144-297)||(26848555-26848708)
chr6 (144-272)||(27214312-27214440)
chr6 (144-272)||(27234788-27234916)
chr6 (114-297)||(28226815-28226998)
chr6 (144-274)||(25071554-25071684)
chr6 (147-297)||(28242702-28242852)
chr6 (189-274)||(26617266-26617351)
chr6 (189-274)||(26723194-26723279)
chr6 (153-274)||(26959069-26959190)
chr6 (144-281)||(27665272-27665409)
chr6 (109-297)||(26936954-26937142)
chr6 (193-296)||(26811453-26811556)
chr6 (168-287)||(26949580-26949699)
chr6 (113-199)||(26342171-26342257)
chr6 (11-43)||(27338450-27338482)
chr6 (11-43)||(27399190-27399222)
chr6 (212-296)||(28491660-28491744)
chr6 (212-296)||(29804070-29804154)
chr6 (223-297)||(28149912-28149985)
chr6 (219-297)||(29467797-29467875)
chr6 (168-297)||(26974971-26975100)
chr6 (253-297)||(25507048-25507092)
[»] scaffold0349 (3 HSPs)
scaffold0349 (12-295)||(3563-3844)
scaffold0349 (22-295)||(14496-14767)
scaffold0349 (11-176)||(8061-8225)
[»] scaffold0277 (2 HSPs)
scaffold0277 (11-297)||(13771-14056)
scaffold0277 (11-295)||(4812-5100)
[»] scaffold1254 (1 HSPs)
scaffold1254 (11-297)||(56-334)
[»] scaffold0419 (1 HSPs)
scaffold0419 (11-297)||(7295-7573)
[»] chr4 (8 HSPs)
chr4 (13-297)||(18699526-18699807)
chr4 (11-297)||(18731630-18731913)
chr4 (11-297)||(18679693-18679976)
chr4 (79-297)||(18724211-18724429)
chr4 (11-281)||(18655619-18655886)
chr4 (16-247)||(17989226-17989454)
chr4 (16-247)||(18073535-18073763)
chr4 (153-293)||(5091097-5091237)
[»] chr1 (3 HSPs)
chr1 (65-296)||(28164489-28164720)
chr1 (85-297)||(268483-268695)
chr1 (111-297)||(28127805-28127992)
[»] chr8 (2 HSPs)
chr8 (85-281)||(29273925-29274121)
chr8 (125-280)||(31903727-31903882)
[»] scaffold0003 (1 HSPs)
scaffold0003 (16-247)||(59343-59571)
[»] scaffold0038 (4 HSPs)
scaffold0038 (126-297)||(34602-34773)
scaffold0038 (111-297)||(116658-116844)
scaffold0038 (114-297)||(27313-27496)
scaffold0038 (147-297)||(42864-43014)
[»] scaffold0019 (1 HSPs)
scaffold0019 (111-293)||(58425-58607)
[»] chr2 (2 HSPs)
chr2 (87-297)||(17993823-17994033)
chr2 (123-297)||(3279562-3279736)
[»] chr5 (1 HSPs)
chr5 (182-297)||(16688944-16689059)


Alignment Details
Target: chr6 (Bit Score: 255; Significance: 1e-142; HSPs: 67)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 255; E-Value: 1e-142
Query Start/End: Original strand, 11 - 297
Target Start/End: Original strand, 26802201 - 26802490
Alignment:
Q  11 cacagaccacaaaaacttactcattcatattctgcattctcaaactcnnnnnnn---catccaatttctcacaattttcatggctatgcagtctccttcc 107  Q
    |||||||||||||||||||||||||||||||||||||||||||||||          |||||||||||||||||||||||||||||||||||||||||||    
T  26802201 cacagaccacaaaaacttactcattcatattctgcattctcaaactcttttttttttcatccaatttctcacaattttcatggctatgcagtctccttcc 26802300  T
Q  108 tcatcctcttcattttcttatggattcacttaccaagtgttcctcagttttaggggcactgacactcggtacggttttacgggcaatctctacaaggctc 207  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  26802301 tcatcctcttcattttcttatggattcacttaccaagtgttcctcagttttaggggcactgacactcggtacggttttacgggcaatctctacaaggctc 26802400  T
Q  208 ttattgacaagggaatccataccttcattgatgacaatgatcttcaaagaggagatgaaatcacaccatcactcatcaaggccattgaag 297  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  26802401 ttattgacaagggaatccataccttcattgatgacaatgatcttcaaagaggagatgaaatcacaccatcactcatcaaggccattgaag 26802490  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 194; E-Value: 1e-105
Query Start/End: Original strand, 12 - 295
Target Start/End: Complemental strand, 27725267 - 27724986
Alignment:
Q  12 acagaccacaaaaacttactcattcatattctgcattctcaaactcnnnnnnncatccaatttctcacaattttcatggctatgcagtctccttcctcat 111  Q
    |||||||||||||| |||| ||||||||||||||||||||||||||       ||||| ||||||| ||||| |||||||||| || || ||||||||||    
T  27725267 acagaccacaaaaatttac-cattcatattctgcattctcaaactctttttt-catcctatttctctcaattgtcatggctatacaatcaccttcctcat 27725170  T
Q  112 cctcttcattttcttatggattcacttaccaagtgttcctcagttttaggggcactgacactcggtacggttttacgggcaatctctacaaggctcttat 211  Q
    ||||||||||||| |||||||||||||||||||||||||| |||||||||||||||||||||||| |||||||||| || |||||||||||||||||||     
T  27725169 cctcttcattttcctatggattcacttaccaagtgttccttagttttaggggcactgacactcggcacggttttaccggaaatctctacaaggctcttac 27725070  T
Q  212 tgacaagggaatccataccttcattgatgacaatgatcttcaaagaggagatgaaatcacaccatcactcatcaaggccattga 295  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||    
T  27725069 tgacaagggaatccataccttcattgatgacaatgatcttcaaagaggagatgaaatcacaccatcactcctcaaggccattga 27724986  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 188; E-Value: 1e-102
Query Start/End: Original strand, 22 - 295
Target Start/End: Complemental strand, 27698906 - 27698635
Alignment:
Q  22 aaaacttactcattcatattctgcattctcaaactcnnnnnnncatccaatttctcacaattttcatggctatgcagtctccttcctcatcctcttcatt 121  Q
    |||| |||||||||||||||||||||||||||||||       ||||| ||||||| ||||| |||||||||| || || |||||||||||| |||||||    
T  27698906 aaaatttactcattcatattctgcattctcaaactcttttt--catcctatttctctcaattctcatggctatacaatcaccttcctcatccacttcatt 27698809  T
Q  122 ttcttatggattcacttaccaagtgttcctcagttttaggggcactgacactcggtacggttttacgggcaatctctacaaggctcttattgacaaggga 221  Q
    ||| |||||||||||||||||||||||| |||||||||||||||||||||||||| |||||||||| || ||||||||||||||||||| ||||||||||    
T  27698808 ttcctatggattcacttaccaagtgttcatcagttttaggggcactgacactcggcacggttttaccggaaatctctacaaggctcttactgacaaggga 27698709  T
Q  222 atccataccttcattgatgacaatgatcttcaaagaggagatgaaatcacaccatcactcatcaaggccattga 295  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||    
T  27698708 atccataccttcattgatgacaatgatcttcaaagaggagatgaaatcacaccatcactcctcaaggccattga 27698635  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 187; E-Value: 1e-101
Query Start/End: Original strand, 11 - 295
Target Start/End: Original strand, 27228997 - 27229278
Alignment:
Q  11 cacagaccacaaaaacttactcattcatattctgcattctcaaactcnnnnnnncatccaatttctcacaattttcatggctatgcagtctccttcctca 110  Q
    |||| ||||||||||| ||||||||||||||||||||||| ||||||       ||||||||||||| ||| | |||||||||| || || ||||||||     
T  27228997 cacataccacaaaaacatactcattcatattctgcattctaaaactctttt---catccaatttctctcaagtctcatggctatacaatcaccttcctct 27229093  T
Q  111 tcctcttcattttcttatggattcacttaccaagtgttcctcagttttaggggcactgacactcggtacggttttacgggcaatctctacaaggctctta 210  Q
    |||||||||||||| | |||||||||||||||||||||||| |||||||||||||||||||||||| |||||||||| ||||||||||||||||||||||    
T  27229094 tcctcttcattttcctttggattcacttaccaagtgttccttagttttaggggcactgacactcggcacggttttaccggcaatctctacaaggctctta 27229193  T
Q  211 ttgacaagggaatccataccttcattgatgacaatgatcttcaaagaggagatgaaatcacaccatcactcatcaaggccattga 295  Q
     ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |||||||||||||    
T  27229194 ctgacaagggaatccataccttcattgatgacaatgatcttcaaagaggagacgaaatcacaccatcactcgtcaaggccattga 27229278  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 187; E-Value: 1e-101
Query Start/End: Original strand, 11 - 295
Target Start/End: Complemental strand, 27718803 - 27718520
Alignment:
Q  11 cacagaccacaaaaacttactcattcatattctgcattctcaaactcnnnnnnncatccaatttctcacaattttcatggctatgcagtctccttcctca 110  Q
    |||||| |||||||| | |||||||||||||||||||||||||||||       ||||| ||||||| ||||| |||||||||| || || |||||||||    
T  27718803 cacagaacacaaaaattcactcattcatattctgcattctcaaactctttttt-catcctatttctctcaattctcatggctatacaatcaccttcctca 27718705  T
Q  111 tcctcttcattttcttatggattcacttaccaagtgttcctcagttttaggggcactgacactcggtacggttttacgggcaatctctacaaggctctta 210  Q
    ||||||||||| ||  |||||||||||||||||||||||||||||||||||||||||||||||||| || ||||||| || |||||||||||||||||||    
T  27718704 tcctcttcattctcccatggattcacttaccaagtgttcctcagttttaggggcactgacactcggcacagttttaccggaaatctctacaaggctctta 27718605  T
Q  211 ttgacaagggaatccataccttcattgatgacaatgatcttcaaagaggagatgaaatcacaccatcactcatcaaggccattga 295  Q
     |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||    
T  27718604 ctgacaagggaatccataccttcattgatgacaatgatcttcaaagaggagatgaaatcacaccatcactcctcaaggccattga 27718520  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 185; E-Value: 1e-100
Query Start/End: Original strand, 11 - 297
Target Start/End: Original strand, 28786041 - 28786326
Alignment:
Q  11 cacagaccacaaaaacttactcattcatattctgcattctcaaactcnnnnnnncatccaatttctcacaattttcatggctatgcagtctccttcctca 110  Q
    ||||||||||||||||  |||||||||||||||| ||||||||||||       ||||||||||||| ||||| | |||||||| || || |||||||||    
T  28786041 cacagaccacaaaaacaaactcattcatattctgaattctcaaactctttttt-catccaatttctctcaattcttatggctatacaatcaccttcctca 28786139  T
Q  111 tcctcttcattttcttatggattcacttaccaagtgttcctcagttttaggggcactgacactcggtacggttttacgggcaatctctacaaggctctta 210  Q
    |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||  |||||||||| || |||||||||||||||||||    
T  28786140 tcctcttcattttcctatggattcacttaccaagtgttcctcagttttaggggcactgacactcgccacggttttaccggaaatctctacaaggctctta 28786239  T
Q  211 ttgacaagggaatccataccttcattgatgacaatgatcttcaaagaggagatgaaatcacaccatcactcatcaaggccattgaag 297  Q
     ||||||||||||| | |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| ||||    
T  28786240 ctgacaagggaatcaaaaccttcattgatgacaatgatcttcaaagaggagatgaaatcacaccatcactcctcaaggccatcgaag 28786326  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 181; E-Value: 9e-98
Query Start/End: Original strand, 11 - 297
Target Start/End: Original strand, 28780902 - 28781187
Alignment:
Q  11 cacagaccacaaaaacttactcattcatattctgcattctcaaactcnnnnnnncatccaatttctcacaattttcatggctatgcagtctccttcctca 110  Q
    ||||||||||||||||  |||||||||||||||| ||||||||||||       ||||||||||||| ||||| ||||||||||||| |  ||||||||     
T  28780902 cacagaccacaaaaacaaactcattcatattctgaattctcaaactctttttt-catccaatttctctcaattatcatggctatgcaattaccttcctct 28781000  T
Q  111 tcctcttcattttcttatggattcacttaccaagtgttcctcagttttaggggcactgacactcggtacggttttacgggcaatctctacaaggctctta 210  Q
    |||||||||||||| | || |||||||||||||||||||||||||||||||||||||||||||||  |||||||||| ||||||||||||||||||||||    
T  28781001 tcctcttcattttcctctgcattcacttaccaagtgttcctcagttttaggggcactgacactcgccacggttttaccggcaatctctacaaggctctta 28781100  T
Q  211 ttgacaagggaatccataccttcattgatgacaatgatcttcaaagaggagatgaaatcacaccatcactcatcaaggccattgaag 297  Q
     ||||||||||||| | |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| ||||    
T  28781101 ctgacaagggaatcaaaaccttcattgatgacaatgatcttcaaagaggagatgaaatcacaccatcactcctcaaggccatcgaag 28781187  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 179; E-Value: 1e-96
Query Start/End: Original strand, 31 - 295
Target Start/End: Complemental strand, 27611406 - 27611143
Alignment:
Q  31 tcattcatattctgcattctcaaactcnnnnnnncatccaatttctcacaattttcatggctatgcagtctccttcctcatcctcttcattttcttatgg 130  Q
    |||||||||||||||||||||||||||       ||||||||||||| ||||||||||||||||||| |   ||||||| || ||||||||||| |||||    
T  27611406 tcattcatattctgcattctcaaactctttttt-catccaatttctctcaattttcatggctatgcaattagcttcctcttcttcttcattttcctatgg 27611308  T
Q  131 attcacttaccaagtgttcctcagttttaggggcactgacactcggtacggttttacgggcaatctctacaaggctcttattgacaagggaatccatacc 230  Q
    |||||||||||||||||||||||||||||||||||||||||||||  |||||||||| || ||||||||||||||||||| |||||||||||||||||||    
T  27611307 attcacttaccaagtgttcctcagttttaggggcactgacactcgccacggttttaccggaaatctctacaaggctcttactgacaagggaatccatacc 27611208  T
Q  231 ttcattgatgacaatgatcttcaaagaggagatgaaatcacaccatcactcatcaaggccattga 295  Q
    |||||||||||||||||||||| |||||||||||||||||||||||||||| |||||||||||||    
T  27611207 ttcattgatgacaatgatcttccaagaggagatgaaatcacaccatcactcctcaaggccattga 27611143  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 174; E-Value: 1e-93
Query Start/End: Original strand, 11 - 295
Target Start/End: Complemental strand, 27605135 - 27604846
Alignment:
Q  11 cacagaccacaaaaacttactcattcatattctgcattctcaaactcnnnnnnncatccaatttctcacaattttcatggctatgcagtctccttcctca 110  Q
    |||||||||||||||||||||||||||||||||||||||||||||||       ||||||||||||| ||||| ||||||||||||| |  |||||||||    
T  27605135 cacagaccacaaaaacttactcattcatattctgcattctcaaactctttttt-catccaatttctctcaattctcatggctatgcaattaccttcctca 27605037  T
Q  111 tcctc------ttcattttcttatggattcacttaccaagtgttcctcagttttaggggcactgacactcggtacggttttacgggcaatctctacaagg 204  Q
    |||||      ||||||||| |||| ||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||| ||||||||||||||||    
T  27605036 tcctcatcctcttcattttcctatgcattcacttaccaagtgttccttagttttaggggcactgacactcgatacggttttaccggcaatctctacaagg 27604937  T
Q  205 ctcttattgacaagggaatccataccttcattgatgacaatgatcttcaaagaggagatgaaatcacaccatcactcatcaaggccattga 295  Q
    |||||| |||||||||||| ||||||||||||||||| |||||||||| |||||||||||||||||||||| ||||  |||||||||||||    
T  27604936 ctcttactgacaagggaattcataccttcattgatgaaaatgatcttcgaagaggagatgaaatcacaccagcacttctcaaggccattga 27604846  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 173; E-Value: 5e-93
Query Start/End: Original strand, 11 - 297
Target Start/End: Original strand, 26655752 - 26656037
Alignment:
Q  11 cacagaccacaaaaacttactcattcatattctgcattctcaaactcnnnnnnncatccaatttctcacaattttcatggctatgcagtctccttcctca 110  Q
    ||||||||||||||||||||||||||||||||||||||| |||||||       |||||| |||||| ||||| |||||||||| || || |||||||||    
T  26655752 cacagaccacaaaaacttactcattcatattctgcattcccaaactctttttt-catccattttctctcaattctcatggctatacaatcaccttcctca 26655850  T
Q  111 tcctcttcattttcttatggattcacttaccaagtgttcctcagttttaggggcactgacactcggtacggttttacgggcaatctctacaaggctctta 210  Q
    |||||||||||||| ||||| || |  |||||||||||||||||||||||||||| |||||| ||| |||||||||| ||||||||||||||||||||||    
T  26655851 tcctcttcattttcctatgggtttaaataccaagtgttcctcagttttaggggcattgacacccggcacggttttaccggcaatctctacaaggctctta 26655950  T
Q  211 ttgacaagggaatccataccttcattgatgacaatgatcttcaaagaggagatgaaatcacaccatcactcatcaaggccattgaag 297  Q
    |||| |||||||||||||| ||||||||||||||||||||||  ||||||||||||||||||||||||||| | |||||||||||||    
T  26655951 ttgataagggaatccatactttcattgatgacaatgatcttctcagaggagatgaaatcacaccatcactcgttaaggccattgaag 26656037  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 173; E-Value: 5e-93
Query Start/End: Original strand, 11 - 297
Target Start/End: Original strand, 26761723 - 26762008
Alignment:
Q  11 cacagaccacaaaaacttactcattcatattctgcattctcaaactcnnnnnnncatccaatttctcacaattttcatggctatgcagtctccttcctca 110  Q
    ||||||||||||||||||||||||||||||||||||||| |||||||       |||||| |||||| ||||| |||||||||| || || |||||||||    
T  26761723 cacagaccacaaaaacttactcattcatattctgcattcccaaactctttttt-catccattttctctcaattctcatggctatacaatcaccttcctca 26761821  T
Q  111 tcctcttcattttcttatggattcacttaccaagtgttcctcagttttaggggcactgacactcggtacggttttacgggcaatctctacaaggctctta 210  Q
    |||||||||||||| ||||| || |  |||||||||||||||||||||||||||| |||||| ||| |||||||||| ||||||||||||||||||||||    
T  26761822 tcctcttcattttcctatgggtttaaataccaagtgttcctcagttttaggggcattgacacccggcacggttttaccggcaatctctacaaggctctta 26761921  T
Q  211 ttgacaagggaatccataccttcattgatgacaatgatcttcaaagaggagatgaaatcacaccatcactcatcaaggccattgaag 297  Q
    |||| |||||||||||||| ||||||||||||||||||||||  ||||||||||||||||||||||||||| | |||||||||||||    
T  26761922 ttgataagggaatccatactttcattgatgacaatgatcttctcagaggagatgaaatcacaccatcactcgttaaggccattgaag 26762008  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 171; E-Value: 8e-92
Query Start/End: Original strand, 33 - 297
Target Start/End: Original strand, 28792184 - 28792447
Alignment:
Q  33 attcatattctgcattctcaaactcnnnnnnncatccaatttctcacaattttcatggctatgcagtctccttcctcatcctcttcattttcttatggat 132  Q
    |||||||||||| ||||||||||||       ||||||||||||| ||||| | |||||||| || || ||||||||||||||||||||||| |||||||    
T  28792184 attcatattctgaattctcaaactctttttt-catccaatttctctcaattcttatggctatacaatcaccttcctcatcctcttcattttcctatggat 28792282  T
Q  133 tcacttaccaagtgttcctcagttttaggggcactgacactcggtacggttttacgggcaatctctacaaggctcttattgacaagggaatccatacctt 232  Q
    |||||||||||||||||||||||||||||||||||||||||||  |||||||||| || ||||||||||||||||||| ||||||||||||| | |||||    
T  28792283 tcacttaccaagtgttcctcagttttaggggcactgacactcgccacggttttaccggaaatctctacaaggctcttactgacaagggaatcaaaacctt 28792382  T
Q  233 cattgatgacaatgatcttcaaagaggagatgaaatcacaccatcactcatcaaggccattgaag 297  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| ||||    
T  28792383 cattgatgacaatgatcttcaaagaggagatgaaatcacaccatcactcctcaaggccatcgaag 28792447  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 127; E-Value: 1e-65
Query Start/End: Original strand, 71 - 297
Target Start/End: Complemental strand, 27338430 - 27338204
Alignment:
Q  71 atttctcacaattttcatggctatgcagtctccttcctcatcctcttcattttcttatggattcacttaccaagtgttcctcagttttaggggcactgac 170  Q
    ||||||| ||||| ||||||||||||| || | |||||| ||||||||| |||| | ||| ||||  ||||| ||||||||||||||||||| || ||||    
T  27338430 atttctctcaattctcatggctatgcaatcactttcctcttcctcttcaatttcctctgggttcaaataccatgtgttcctcagttttagggacattgac 27338331  T
Q  171 actcggtacggttttacgggcaatctctacaaggctcttattgacaagggaatccataccttcattgatgacaatgatcttcaaagaggagatgaaatca 270  Q
    ||||  ||||||||||| |||||||||||||||||||||||||||||||||||| | ||||||||||||||||| |||||| ||||||||||||||| ||    
T  27338330 actctttacggttttaccggcaatctctacaaggctcttattgacaagggaatcaaaaccttcattgatgacaacgatcttgaaagaggagatgaaagca 27338231  T
Q  271 caccatcactcatcaaggccattgaag 297  Q
    ||||||||||  |||||||||||||||    
T  27338230 caccatcacttgtcaaggccattgaag 27338204  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 127; E-Value: 1e-65
Query Start/End: Original strand, 71 - 297
Target Start/End: Complemental strand, 27399170 - 27398944
Alignment:
Q  71 atttctcacaattttcatggctatgcagtctccttcctcatcctcttcattttcttatggattcacttaccaagtgttcctcagttttaggggcactgac 170  Q
    ||||||| ||||| ||||||||||||| || | |||||| ||||||||| |||| | ||| ||||  ||||| ||||||||||||||||||| || ||||    
T  27399170 atttctctcaattctcatggctatgcaatcactttcctcttcctcttcaatttcctctgggttcaaataccatgtgttcctcagttttagggacattgac 27399071  T
Q  171 actcggtacggttttacgggcaatctctacaaggctcttattgacaagggaatccataccttcattgatgacaatgatcttcaaagaggagatgaaatca 270  Q
    ||||  ||||||||||| |||||||||||||||||||||||||||||||||||| | ||||||||||||||||| |||||| ||||||||||||||| ||    
T  27399070 actctttacggttttaccggcaatctctacaaggctcttattgacaagggaatcaaaaccttcattgatgacaacgatcttgaaagaggagatgaaagca 27398971  T
Q  271 caccatcactcatcaaggccattgaag 297  Q
    ||||||||||  |||||||||||||||    
T  27398970 caccatcacttgtcaaggccattgaag 27398944  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 118; E-Value: 3e-60
Query Start/End: Original strand, 131 - 280
Target Start/End: Complemental strand, 27531502 - 27531353
Alignment:
Q  131 attcacttaccaagtgttcctcagttttaggggcactgacactcggtacggttttacgggcaatctctacaaggctcttattgacaagggaatccatacc 230  Q
    |||||||||||||||||||||||||||||||||| | ||||||||  |||||||||| || ||||||||||||||||||| ||||||||||||| |||||    
T  27531502 attcacttaccaagtgttcctcagttttaggggcgcggacactcgccacggttttaccggaaatctctacaaggctcttactgacaagggaatctatacc 27531403  T
Q  231 ttcattgatgacaatgatcttcaaagaggagatgaaatcacaccatcact 280  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  27531402 ttcattgatgacaatgatcttcaaagaggagatgaaatcacaccatcact 27531353  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 115; E-Value: 2e-58
Query Start/End: Original strand, 111 - 297
Target Start/End: Original strand, 26884025 - 26884211
Alignment:
Q  111 tcctcttcattttcttatggattcacttaccaagtgttcctcagttttaggggcactgacactcggtacggttttacgggcaatctctacaaggctctta 210  Q
    |||||||||||||| |||||||||||||||||||||||||||||||| || || | |||||||||||| ||||| || || |||||||||||||||||||    
T  26884025 tcctcttcattttcctatggattcacttaccaagtgttcctcagtttcagaggaagtgacactcggtatggtttcactggaaatctctacaaggctctta 26884124  T
Q  211 ttgacaagggaatccataccttcattgatgacaatgatcttcaaagaggagatgaaatcacaccatcactcatcaaggccattgaag 297  Q
     | ||||||||||||| |||||||||||||| ||| |||||| |||||||   ||||||||||||||||||||||||||||||||||    
T  26884125 ctaacaagggaatccacaccttcattgatgataatcatcttccaagaggaagcgaaatcacaccatcactcatcaaggccattgaag 26884211  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 113; E-Value: 3e-57
Query Start/End: Original strand, 85 - 297
Target Start/End: Complemental strand, 27593371 - 27593159
Alignment:
Q  85 tcatggctatgcagtctccttcctcatcctcttcattttcttatggattcacttaccaagtgttcctcagttttaggggcactgacactcggtacggttt 184  Q
    ||||||||||||| || |||||||| ||| ||||| |||| ||||  | ||  |||||||| ||||||||||| || || | ||||||||||||||||||    
T  27593371 tcatggctatgcaatcaccttcctcttccacttcaatttcctatgattacaaataccaagtattcctcagtttcagaggaagtgacactcggtacggttt 27593272  T
Q  185 tacgggcaatctctacaaggctcttattgacaagggaatccataccttcattgatgacaatgatcttcaaagaggagatgaaatcacaccatcactcatc 284  Q
     || |||||||||||||||||||||| ||||||||||||| | ||||||||||||||||||| ||||||||||||| |||||||||||||||||||  ||    
T  27593271 caccggcaatctctacaaggctcttactgacaagggaatcaacaccttcattgatgacaatggtcttcaaagaggaaatgaaatcacaccatcacttctc 27593172  T
Q  285 aaggccattgaag 297  Q
    |||||||||||||    
T  27593171 aaggccattgaag 27593159  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 109; E-Value: 8e-55
Query Start/End: Original strand, 85 - 297
Target Start/End: Original strand, 31284124 - 31284336
Alignment:
Q  85 tcatggctatgcagtctccttcctcatcctcttcattttcttatggattcacttaccaagtgttcctcagttttaggggcactgacactcggtacggttt 184  Q
    ||||||||||||| ||  ||||||| ||||||||| |||| |||| |||||  |||||||| ||||| ||||| ||||| | |||||||||||| |||||    
T  31284124 tcatggctatgcaatcatcttcctcttcctcttcaatttcctatgtattcaaataccaagtattccttagtttcaggggaagtgacactcggtatggttt 31284223  T
Q  185 tacgggcaatctctacaaggctcttattgacaagggaatccataccttcattgatgacaatgatcttcaaagaggagatgaaatcacaccatcactcatc 284  Q
     || |||||||||||||||||||||| ||||||||||||||| |||||||||||||| | ||| ||||||||||| |||||||||||||||||||||  |    
T  31284224 caccggcaatctctacaaggctcttactgacaagggaatccacaccttcattgatgatagtgaacttcaaagaggggatgaaatcacaccatcactcgac 31284323  T
Q  285 aaggccattgaag 297  Q
    || ||||||||||    
T  31284324 aatgccattgaag 31284336  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 105; E-Value: 2e-52
Query Start/End: Original strand, 85 - 297
Target Start/End: Original strand, 27678782 - 27678994
Alignment:
Q  85 tcatggctatgcagtctccttcctcatcctcttcattttcttatggattcacttaccaagtgttcctcagttttaggggcactgacactcggtacggttt 184  Q
    ||||||||||||| || |||||||| ||| ||||| |||| ||||  | ||  |||||||| ||||||||||| || || | ||||||||||||||||||    
T  27678782 tcatggctatgcaatcaccttcctcttccacttcaatttcctatgagtacaaataccaagtattcctcagtttcagaggaagtgacactcggtacggttt 27678881  T
Q  185 tacgggcaatctctacaaggctcttattgacaagggaatccataccttcattgatgacaatgatcttcaaagaggagatgaaatcacaccatcactcatc 284  Q
     || || ||||||||||||||||||| ||||||||||||| | |||||||||||| | |||| |||||||||||||||||||||||||||||||||  ||    
T  27678882 caccgggaatctctacaaggctcttactgacaagggaatcaacaccttcattgataagaatggtcttcaaagaggagatgaaatcacaccatcacttctc 27678981  T
Q  285 aaggccattgaag 297  Q
    |||||||||||||    
T  27678982 aaggccattgaag 27678994  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #20
Raw Score: 94; E-Value: 7e-46
Query Start/End: Original strand, 79 - 280
Target Start/End: Original strand, 26622806 - 26623007
Alignment:
Q  79 caattttcatggctatgcagtctccttcctcatcctcttcattttcttatggattcacttaccaagtgttcctcagttttaggggcactgacactcggta 178  Q
    ||||| ||||||||||||| || || ||||| ||||||||| |||| |||  |||||  |||||||||||||| ||||| || |||| ||||||||||||    
T  26622806 caattatcatggctatgcaatcaccatcctcttcctcttcaatttcctatcaattcaaataccaagtgttcctaagtttcagaggcagtgacactcggta 26622905  T
Q  179 cggttttacgggcaatctctacaaggctcttattgacaagggaatccataccttcattgatgacaatgatcttcaaagaggagatgaaatcacaccatca 278  Q
    |||||| || || ||||||||||||||||||| ||||||||||||||| ||||||||||||||   ||| ||||||||||| || ||||||| |||||||    
T  26622906 cggtttcactggaaatctctacaaggctcttactgacaagggaatccacaccttcattgatgatcgtgaacttcaaagaggggacgaaatcaaaccatca 26623005  T
Q  279 ct 280  Q
    ||    
T  26623006 ct 26623007  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #21
Raw Score: 94; E-Value: 7e-46
Query Start/End: Original strand, 104 - 297
Target Start/End: Original strand, 26646334 - 26646527
Alignment:
Q  104 ttcctcatcctcttcattttcttatggattcacttaccaagtgttcctcagttttaggggcactgacactcggtacggttttacgggcaatctctacaag 203  Q
    |||||| ||||||| | |||| || |||||||| ||||| || |||||||  || ||||||| |||||||||  |||||||||| ||  |||||||||||    
T  26646334 ttcctcttcctctttaatttcctacggattcacctaccaggtcttcctcaacttcaggggcagtgacactcgtgacggttttactggacatctctacaag 26646433  T
Q  204 gctcttattgacaagggaatccataccttcattgatgacaatgatcttcaaagaggagatgaaatcacaccatcactcatcaaggccattgaag 297  Q
    ||||||| |||||||||||| || ||||||||||||||   ||||||| | |||||||||||||||||||||||||||||||||||||||||||    
T  26646434 gctcttactgacaagggaattcacaccttcattgatgattgtgatcttaagagaggagatgaaatcacaccatcactcatcaaggccattgaag 26646527  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #22
Raw Score: 94; E-Value: 7e-46
Query Start/End: Original strand, 79 - 280
Target Start/End: Original strand, 26728784 - 26728985
Alignment:
Q  79 caattttcatggctatgcagtctccttcctcatcctcttcattttcttatggattcacttaccaagtgttcctcagttttaggggcactgacactcggta 178  Q
    ||||| ||||||||||||| || || ||||| ||||||||| |||| |||  |||||  |||||||||||||| ||||| || |||| ||||||||||||    
T  26728784 caattatcatggctatgcaatcaccatcctcttcctcttcaatttcctatcaattcaaataccaagtgttcctaagtttcagaggcagtgacactcggta 26728883  T
Q  179 cggttttacgggcaatctctacaaggctcttattgacaagggaatccataccttcattgatgacaatgatcttcaaagaggagatgaaatcacaccatca 278  Q
    |||||| || || ||||||||||||||||||| ||||||||||||||| ||||||||||||||   ||| ||||||||||| || ||||||| |||||||    
T  26728884 cggtttcactggaaatctctacaaggctcttactgacaagggaatccacaccttcattgatgatcgtgaacttcaaagaggggacgaaatcaaaccatca 26728983  T
Q  279 ct 280  Q
    ||    
T  26728984 ct 26728985  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #23
Raw Score: 94; E-Value: 7e-46
Query Start/End: Original strand, 104 - 297
Target Start/End: Original strand, 26752302 - 26752495
Alignment:
Q  104 ttcctcatcctcttcattttcttatggattcacttaccaagtgttcctcagttttaggggcactgacactcggtacggttttacgggcaatctctacaag 203  Q
    |||||| ||||||| | |||| || |||||||| ||||| || |||||||  || ||||||| |||||||||  |||||||||| ||  |||||||||||    
T  26752302 ttcctcttcctctttaatttcctacggattcacctaccaggtcttcctcaacttcaggggcagtgacactcgtgacggttttactggacatctctacaag 26752401  T
Q  204 gctcttattgacaagggaatccataccttcattgatgacaatgatcttcaaagaggagatgaaatcacaccatcactcatcaaggccattgaag 297  Q
    ||||||| |||||||||||| || ||||||||||||||   ||||||| | |||||||||||||||||||||||||||||||||||||||||||    
T  26752402 gctcttactgacaagggaattcacaccttcattgatgattgtgatcttaagagaggagatgaaatcacaccatcactcatcaaggccattgaag 26752495  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #24
Raw Score: 93; E-Value: 3e-45
Query Start/End: Original strand, 85 - 297
Target Start/End: Complemental strand, 27677965 - 27677753
Alignment:
Q  85 tcatggctatgcagtctccttcctcatcctcttcattttcttatggattcacttaccaagtgttcctcagttttaggggcactgacactcggtacggttt 184  Q
    ||||||||||||| || |||||||| ||| ||||| |||| ||||  | ||  |||||||| ||||||| ||| || || | ||||||||||||||||||    
T  27677965 tcatggctatgcaatcaccttcctcttccacttcaatttcctatgagtacaaataccaagtattcctcaatttcagaggaagtgacactcggtacggttt 27677866  T
Q  185 tacgggcaatctctacaaggctcttattgacaagggaatccataccttcattgatgacaatgatcttcaaagaggagatgaaatcacaccatcactcatc 284  Q
     || |||||||||||||||||||||  ||||||||||||||| |||||||||||  |  |||| ||||||||||| ||||||||||||||||||||  ||    
T  27677865 caccggcaatctctacaaggctcttgatgacaagggaatccacaccttcattgacaatcatgaacttcaaagaggggatgaaatcacaccatcacttctc 27677766  T
Q  285 aaggccattgaag 297  Q
    |||||||||||||    
T  27677765 aaggccattgaag 27677753  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #25
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 143 - 297
Target Start/End: Original strand, 25481636 - 25481790
Alignment:
Q  143 agtgttcctcagttttaggggcactgacactcggtacggttttacgggcaatctctacaaggctcttattgacaagggaatccataccttcattgatgac 242  Q
    ||||||||||| ||| ||||||| |||||||||  ||  |||||| || |||||||| ||||||||| ||||||||||||| | ||| |||||||||||     
T  25481636 agtgttcctcaatttcaggggcagtgacactcgcaacaattttaccggtaatctctataaggctcttgttgacaagggaattcgtactttcattgatgaa 25481735  T
Q  243 aatgatcttcaaagaggagatgaaatcacaccatcactcatcaaggccattgaag 297  Q
    ||||||||||||||||||||||||||||||||||||||  |||||||||||||||    
T  25481736 aatgatcttcaaagaggagatgaaatcacaccatcacttgtcaaggccattgaag 25481790  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #26
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 143 - 297
Target Start/End: Original strand, 25579613 - 25579767
Alignment:
Q  143 agtgttcctcagttttaggggcactgacactcggtacggttttacgggcaatctctacaaggctcttattgacaagggaatccataccttcattgatgac 242  Q
    ||||||||||||||| || |||| |||||||||  ||  |||||| || |||||||| ||||||||| ||||||||||||| | ||||||| |||||||     
T  25579613 agtgttcctcagtttcagaggcagtgacactcgcaacacttttaccggtaatctctataaggctcttgttgacaagggaattcgtaccttctttgatgat 25579712  T
Q  243 aatgatcttcaaagaggagatgaaatcacaccatcactcatcaaggccattgaag 297  Q
    ||||||||||||||||||||||||||||||||||||||  |||||||||||||||    
T  25579713 aatgatcttcaaagaggagatgaaatcacaccatcacttgtcaaggccattgaag 25579767  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #27
Raw Score: 83; E-Value: 3e-39
Query Start/End: Original strand, 143 - 297
Target Start/End: Original strand, 26142759 - 26142913
Alignment:
Q  143 agtgttcctcagttttaggggcactgacactcggtacggttttacgggcaatctctacaaggctcttattgacaagggaatccataccttcattgatgac 242  Q
    ||||||||||||||| ||||||| |||||||||  ||   ||||| || |||||||| ||||||||| ||||||||||||| | ||| |||||||||||     
T  26142759 agtgttcctcagtttcaggggcagtgacactcgcaacaaatttaccggtaatctctataaggctcttgttgacaagggaattcgtactttcattgatgat 26142858  T
Q  243 aatgatcttcaaagaggagatgaaatcacaccatcactcatcaaggccattgaag 297  Q
    ||||||||| ||||||||||||||||||||||||||||  |||||||||||||||    
T  26142859 aatgatcttgaaagaggagatgaaatcacaccatcacttgtcaaggccattgaag 26142913  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #28
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 11 - 297
Target Start/End: Original strand, 26823609 - 26823888
Alignment:
Q  11 cacagaccacaaaaacttactcattcatattctgcattctcaaactcnnnnnnncatccaatttctcacaattttcatggctatgcagtctccttcctca 110  Q
    |||| ||||||  ||| ||||||||||||||||||||||||||||||       | ||||||||||| ||||| ||||||||||||||||  |||||||     
T  26823609 cacacaccacagtaacatactcattcatattctgcattctcaaactctttctt-cgtccaatttctctcaattctcatggctatgcagtcaacttcctc- 26823706  T
Q  111 tcctcttcattttcttatggattcacttaccaagtgttcctcagttttaggggcactgacactcggtacggttttacgggcaatctctacaaggctctta 210  Q
         |||| |||| ||||  ||||  ||||||||||| ||||||||||| ||| ||||||||||||| |  ||||| ||||||||||||||||||||||    
T  26823707 -----ttcagtttcatatgatttcaaataccaagtgtttctcagttttagaggcgctgacactcggtatgaatttaccggcaatctctacaaggctctta 26823801  T
Q  211 ttgacaagggaatccataccttcattgatgacaatgatcttcaaagaggagatgaaatcacaccatcactcatcaaggccattgaag 297  Q
      |||||||||||||| |||||  |||||||   ||| ||||||||||| ||| |||||  || ||||||||  || ||||||||||    
T  26823802 cagacaagggaatccacaccttttttgatgatcgtgaacttcaaagaggggataaaatcgaacaatcactcaataatgccattgaag 26823888  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #29
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 16 - 247
Target Start/End: Complemental strand, 27428020 - 27427792
Alignment:
Q  16 accacaaaaacttactcattcatattctgcattctcaaactcnnnnnnncatccaatttctcacaattttcatggctatgcagtctccttcctcatcctc 115  Q
    ||||||||||| | ||||||||||||||||||||||||||||       ||||  ||||||| ||||| ||||||| ||||| |  |||| ||  |||||    
T  27428020 accacaaaaacatcctcattcatattctgcattctcaaactcttct---catcttatttctctcaattctcatggccatgcaattacctttctattcctc 27427924  T
Q  116 ttcattttcttatggattcacttaccaagtgttcctcagttttaggggcactgacactcggtacggttttacgggcaatctctacaaggctcttattgac 215  Q
    ||||||||| |||| ||||| |||| | |||||||||| || || |||||| ||||||||||||||||| || ||||||||||  |||||||||||||||    
T  27427923 ttcattttcctatgcattcagttacgatgtgttcctcatttgtaagggcaccgacactcggtacggtttcaccggcaatctcttgaaggctcttattgac 27427824  T
Q  216 aagggaatccataccttcattgatgacaatga 247  Q
    |||||||| | |||||||  ||||||| ||||    
T  27427823 aagggaattcgtaccttccatgatgacgatga 27427792  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #30
Raw Score: 81; E-Value: 4e-38
Query Start/End: Original strand, 85 - 297
Target Start/End: Complemental strand, 27706753 - 27706541
Alignment:
Q  85 tcatggctatgcagtctccttcctcatcctcttcattttcttatggattcacttaccaagtgttcctcagttttaggggcactgacactcggtacggttt 184  Q
    ||||||||||||| || |||| ||| ||| ||||| |||| ||||  | ||  |||||||| ||||||||||| || ||   ||||||||||||||||||    
T  27706753 tcatggctatgcaatcacctttctcttccacttcaatttcctatgagtacaaataccaagtattcctcagtttcagaggaggtgacactcggtacggttt 27706654  T
Q  185 tacgggcaatctctacaaggctcttattgacaagggaatccataccttcattgatgacaatgatcttcaaagaggagatgaaatcacaccatcactcatc 284  Q
     || |||||||||||||||||| ||  ||||||||||||||| |||||||||||  |  |||| ||||||||| | ||||||||||||||||||||  ||    
T  27706653 cacaggcaatctctacaaggcttttgatgacaagggaatccacaccttcattgacaatcatgaacttcaaagaagggatgaaatcacaccatcacttctc 27706554  T
Q  285 aaggccattgaag 297  Q
    |||||||||||||    
T  27706553 aaggccattgaag 27706541  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #31
Raw Score: 79; E-Value: 6e-37
Query Start/End: Original strand, 143 - 297
Target Start/End: Original strand, 26055820 - 26055974
Alignment:
Q  143 agtgttcctcagttttaggggcactgacactcggtacggttttacgggcaatctctacaaggctcttattgacaagggaatccataccttcattgatgac 242  Q
    ||||||||||| ||| ||||||| |||||||||  ||  |||||| || |||||||| ||||||||| |||||||||||||  |||| |||||||||||     
T  26055820 agtgttcctcattttcaggggcagtgacactcgcaacaattttaccggtaatctctataaggctcttgttgacaagggaattaatactttcattgatgaa 26055919  T
Q  243 aatgatcttcaaagaggagatgaaatcacaccatcactcatcaaggccattgaag 297  Q
    |||||||||||||||||||||||||||||| |||||||  |||||||||| ||||    
T  26055920 aatgatcttcaaagaggagatgaaatcacatcatcacttgtcaaggccatcgaag 26055974  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #32
Raw Score: 79; E-Value: 6e-37
Query Start/End: Original strand, 143 - 297
Target Start/End: Original strand, 26075790 - 26075944
Alignment:
Q  143 agtgttcctcagttttaggggcactgacactcggtacggttttacgggcaatctctacaaggctcttattgacaagggaatccataccttcattgatgac 242  Q
    ||||||||||| ||| ||||||| |||||||||  ||  |||||| || |||||||| ||||||||| |||||||||||||  |||| |||||||||||     
T  26075790 agtgttcctcaatttcaggggcagtgacactcgcaacaattttaccggtaatctctataaggctcttgttgacaagggaattaatactttcattgatgaa 26075889  T
Q  243 aatgatcttcaaagaggagatgaaatcacaccatcactcatcaaggccattgaag 297  Q
    |||||||||||||||||||||||||||||| |||||||  |||||||||| ||||    
T  26075890 aatgatcttcaaagaggagatgaaatcacatcatcacttgtcaaggccatcgaag 26075944  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #33
Raw Score: 79; E-Value: 6e-37
Query Start/End: Original strand, 87 - 297
Target Start/End: Original strand, 26861454 - 26861664
Alignment:
Q  87 atggctatgcagtctccttcctcatcctcttcattttcttatggattcacttaccaagtgttcctcagttttaggggcactgacactcggtacggtttta 186  Q
    ||||||||||| || |||| ||| ||||||||  |||| ||||||||||  ||||| || ||||||||||| || || | |||||||||||| |||||||    
T  26861454 atggctatgcaatcaccttgctcttcctcttccatttcctatggattcaaataccaggtattcctcagtttcagaggaagtgacactcggtatggtttta 26861553  T
Q  187 cgggcaatctctacaaggctcttattgacaagggaatccataccttcattgatgacaatgatcttcaaagaggagatgaaatcacaccatcactcatcaa 286  Q
    | || ||||||||||||||||||| |||||||||||| || |||||||| |||||   ||| ||||||||||| |||||||||| |  |||||||  |||    
T  26861554 ccggtaatctctacaaggctcttactgacaagggaattcacaccttcatggatgatcgtgaacttcaaagaggggatgaaatcaaaagatcactcgacaa 26861653  T
Q  287 ggccattgaag 297  Q
     ||||||||||    
T  26861654 tgccattgaag 26861664  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #34
Raw Score: 71; E-Value: 4e-32
Query Start/End: Original strand, 143 - 297
Target Start/End: Original strand, 25538434 - 25538588
Alignment:
Q  143 agtgttcctcagttttaggggcactgacactcggtacggttttacgggcaatctctacaaggctcttattgacaagggaatccataccttcattgatgac 242  Q
    ||||||||||||||| ||||||| |||||||||  ||   ||||| || |||||||| ||||||||| |||||||||||||   ||| ||||| |||||     
T  25538434 agtgttcctcagtttcaggggcagtgacactcgcaacaaatttaccggtaatctctataaggctcttgttgacaagggaattagtactttcatagatgat 25538533  T
Q  243 aatgatcttcaaagaggagatgaaatcacaccatcactcatcaaggccattgaag 297  Q
    ||||||||| ||||||||||||||||||||||||||||  |||||||||| ||||    
T  25538534 aatgatcttgaaagaggagatgaaatcacaccatcacttgtcaaggccatcgaag 25538588  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #35
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 143 - 274
Target Start/End: Original strand, 26048739 - 26048870
Alignment:
Q  143 agtgttcctcagttttaggggcactgacactcggtacggttttacgggcaatctctacaaggctcttattgacaagggaatccataccttcattgatgac 242  Q
    ||||||||||||||| ||||||| |||||||||  ||  |||||| || |||||||| |||||||| ||||||||||||||   ||| |||||||||||     
T  26048739 agtgttcctcagtttcaggggcagtgacactcgcaacaattttaccggtaatctctataaggctctcattgacaagggaatttgtactttcattgatgat 26048838  T
Q  243 aatgatcttcaaagaggagatgaaatcacacc 274  Q
    ||||||||| ||||||||||||||||||||||    
T  26048839 aatgatcttgaaagaggagatgaaatcacacc 26048870  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #36
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 143 - 274
Target Start/End: Original strand, 26069908 - 26070039
Alignment:
Q  143 agtgttcctcagttttaggggcactgacactcggtacggttttacgggcaatctctacaaggctcttattgacaagggaatccataccttcattgatgac 242  Q
    ||||||||||||||| ||||||| |||||||||  ||  |||||| || |||||||| |||||||| ||||||||||||||   ||| |||||||||||     
T  26069908 agtgttcctcagtttcaggggcagtgacactcgcaacaattttaccggtaatctctataaggctctcattgacaagggaatttgtactttcattgatgat 26070007  T
Q  243 aatgatcttcaaagaggagatgaaatcacacc 274  Q
    ||||||||| ||||||||||||||||||||||    
T  26070008 aatgatcttgaaagaggagatgaaatcacacc 26070039  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #37
Raw Score: 64; E-Value: 6e-28
Query Start/End: Original strand, 126 - 297
Target Start/End: Original strand, 28234441 - 28234612
Alignment:
Q  126 tatggattcacttaccaagtgttcctcagttttaggggcactgacactcggtacggttttacgggcaatctctacaaggctcttattgacaagggaatcc 225  Q
    ||||||||||| ||  | |||||||| |||||||| || | ||||||||| || |||||||| |  |||||||| |  ||||||  | ||||||||||||    
T  28234441 tatggattcacctatgacgtgttccttagttttagaggtagtgacactcgctatggttttaccgaaaatctctatagagctctttgtcacaagggaatcc 28234540  T
Q  226 ataccttcattgatgacaatgatcttcaaagaggagatgaaatcacaccatcactcatcaaggccattgaag 297  Q
    | ||||||||||||||||  || |||||| ||||||||||||| |||||||||||  |||||||||||||||    
T  28234541 acaccttcattgatgacagggagcttcaaggaggagatgaaataacaccatcacttttcaaggccattgaag 28234612  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #38
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 111 - 297
Target Start/End: Original strand, 28325343 - 28325529
Alignment:
Q  111 tcctcttcattttcttatggattcacttaccaagtgttcctcagttttaggggcactgacactcggtacggttttacgggcaatctctacaaggctctta 210  Q
    |||||||| ||||| ||||||||||| ||  | |||||||| |||||||| || | ||||||||| || |||||||| || ||||||||||| | ||||     
T  28325343 tcctcttccttttcctatggattcacctatgacgtgttccttagttttagaggtagtgacactcgttatggttttactggaaatctctacaaagatcttt 28325442  T
Q  211 ttgacaagggaatccataccttcattgatgacaatgatcttcaaagaggagatgaaatcacaccatcactcatcaaggccattgaag 297  Q
     |   ||| |||| | |||||||||||||||||| || |||||| |||| || ||||| ||||| |||||  |||||||||||||||    
T  28325443 gtaggaagagaattcgtaccttcattgatgacaaagaccttcaacgaggtgacgaaataacaccgtcacttttcaaggccattgaag 28325529  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #39
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 105 - 297
Target Start/End: Original strand, 28185222 - 28185414
Alignment:
Q  105 tcctcatcctcttcattttcttatggattcacttaccaagtgttcctcagttttaggggcactgacactcggtacggttttacgggcaatctctacaagg 204  Q
    |||||||||||||| || || ||||||||||| ||  | |||||||| || ||||| || | ||||||||| ||  ||||||| || |||||| | |  |    
T  28185222 tcctcatcctcttccttctcctatggattcacctatgacgtgttccttagctttagaggtagtgacactcgttatcgttttactggaaatctcaatagag 28185321  T
Q  205 ctcttattgacaagggaatccataccttcattgatgacaatgatcttcaaagaggagatgaaatcacaccatcactcatcaaggccattgaag 297  Q
    |||||  ||||||||||||||  |||||||| |||||||  || |||||| |||| || ||||| ||| |||||||  |||||||||||||||    
T  28185322 ctctttgtgacaagggaatccgaaccttcatggatgacagagagcttcaaggaggtgaagaaataacatcatcacttttcaaggccattgaag 28185414  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #40
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 103 - 209
Target Start/End: Complemental strand, 28098702 - 28098596
Alignment:
Q  103 cttcctcatcctcttcattttcttatggattcacttaccaagtgttcctcagttttaggggcactgacactcggtacggttttacgggcaatctctacaa 202  Q
    ||||||| | ||||||||| |||||||||||||| ||  | ||||| || | |||||||||||| ||||||||||| |||||||| || |||||||||||    
T  28098702 cttcctctttctcttcattctcttatggattcacctatgacgtgtttcttaattttaggggcaccgacactcggtatggttttactggaaatctctacaa 28098603  T
Q  203 ggctctt 209  Q
     ||||||    
T  28098602 agctctt 28098596  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #41
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 105 - 297
Target Start/End: Original strand, 28180970 - 28181162
Alignment:
Q  105 tcctcatcctcttcattttcttatggattcacttaccaagtgttcctcagttttaggggcactgacactcggtacggttttacgggcaatctctacaagg 204  Q
    |||||||||||||| || || ||||||||||| ||  | | |||||| || ||||| ||   ||||||||| || |||||||| || |||||| | |  |    
T  28180970 tcctcatcctcttccttctcctatggattcacctatgacgcgttccttagctttagaggtggtgacactcgttatggttttactggaaatctcaatagag 28181069  T
Q  205 ctcttattgacaagggaatccataccttcattgatgacaatgatcttcaaagaggagatgaaatcacaccatcactcatcaaggccattgaag 297  Q
    |||||  ||||||||||||||  |||||||| |||||||  || |||||| |||| || ||||| ||| |||||||  |||||||||||||||    
T  28181070 ctctttgtgacaagggaatccgaaccttcatggatgacagagagcttcaaggaggtgaagaaataacatcatcacttttcaaggccattgaag 28181162  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #42
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 180 - 280
Target Start/End: Original strand, 29825958 - 29826058
Alignment:
Q  180 ggttttacgggcaatctctacaaggctcttattgacaagggaatccataccttcattgatgacaatgatcttcaaagaggagatgaaatcacaccatcac 279  Q
    |||||||| |||||||||||||| ||||| | |||||||  ||| |  ||||||||||||||||| || ||||||||||| || ||||||||||| ||||    
T  29825958 ggttttaccggcaatctctacaaagctctaactgacaagaaaattcgcaccttcattgatgacaaagagcttcaaagaggggacgaaatcacaccctcac 29826057  T
Q  280 t 280  Q
    |    
T  29826058 t 29826058  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #43
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 126 - 297
Target Start/End: Complemental strand, 26893781 - 26893610
Alignment:
Q  126 tatggattcacttaccaagtgttcctcagttttaggggcactgacactcggtacggttttacgggcaatctctacaaggctcttattgacaagggaatcc 225  Q
    ||||||||||| ||| | || ||||||| |||||| ||| |||||||||| |  |||||||||||  |||| || || ||||||  ||| |  ||||| |    
T  26893781 tatggattcacctacgatgtcttcctcaattttagaggctctgacactcgttttggttttacgggtcatctttataaagctctttgtgatagtggaattc 26893682  T
Q  226 ataccttcattgatgacaatgatcttcaaagaggagatgaaatcacaccatcactcatcaaggccattgaag 297  Q
    | |||||||||||||| |  || ||||| ||||| || |||||| |||||||||| |||||||| |||||||    
T  26893681 acaccttcattgatgatacagagcttcatagaggtgacgaaatctcaccatcacttatcaaggcaattgaag 26893610  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #44
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 144 - 297
Target Start/End: Original strand, 26635585 - 26635738
Alignment:
Q  144 gtgttcctcagttttaggggcactgacactcggtacggttttacgggcaatctctacaaggctcttattgacaagggaatccataccttcattgatgaca 243  Q
    |||||| | ||||| |||||||| |||||||  | |||||| || || || ||||| || ||||||  |||||| |||||| | ||||||||||||||||    
T  26635585 gtgttcattagtttcaggggcaccgacactcaattcggtttcaccggtaacctctataaagctctttctgacaaaggaatcaacaccttcattgatgaca 26635684  T
Q  244 atgatcttcaaagaggagatgaaatcacaccatcactcatcaaggccattgaag 297  Q
    | || ||| ||| ||| |||||||||||||| || ||| |||||  ||||||||    
T  26635685 aggagcttaaaaaaggggatgaaatcacaccttcgctcctcaagagcattgaag 26635738  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #45
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 144 - 297
Target Start/End: Original strand, 26741551 - 26741704
Alignment:
Q  144 gtgttcctcagttttaggggcactgacactcggtacggttttacgggcaatctctacaaggctcttattgacaagggaatccataccttcattgatgaca 243  Q
    |||||| | ||||| |||||||| |||||||  | |||||| || || || ||||| || ||||||  |||||| |||||| | ||||||||||||||||    
T  26741551 gtgttcattagtttcaggggcaccgacactcaattcggtttcaccggtaacctctataaagctctttctgacaaaggaatcaacaccttcattgatgaca 26741650  T
Q  244 atgatcttcaaagaggagatgaaatcacaccatcactcatcaaggccattgaag 297  Q
    | || ||| ||| ||| |||||||||||||| || ||| |||||  ||||||||    
T  26741651 aggagcttaaaaaaggggatgaaatcacaccttcgctcctcaagagcattgaag 26741704  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #46
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 144 - 297
Target Start/End: Original strand, 26848555 - 26848708
Alignment:
Q  144 gtgttcctcagttttaggggcactgacactcggtacggttttacgggcaatctctacaaggctcttattgacaagggaatccataccttcattgatgaca 243  Q
    |||||| | ||||| |||||||| |||||| | | | |||| || || |||||||| || ||||||  |||||| |||||||  ||||||||||||||||    
T  26848555 gtgttcattagtttcaggggcaccgacactagattcagtttcactggtaatctctataaagctctttctgacaatggaatccgaaccttcattgatgaca 26848654  T
Q  244 atgatcttcaaagaggagatgaaatcacaccatcactcatcaaggccattgaag 297  Q
    | |||||||| || || ||||| |||||||| || ||| |||||  ||||||||    
T  26848655 aggatcttcagagtggtgatgagatcacaccttcgctcctcaagaacattgaag 26848708  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #47
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 144 - 272
Target Start/End: Original strand, 27214312 - 27214440
Alignment:
Q  144 gtgttcctcagttttaggggcactgacactcggtacggttttacgggcaatctctacaaggctcttattgacaagggaatccataccttcattgatgaca 243  Q
    |||||| | ||||| ||||| || ||||||||  ||||||| || || |||||||| || ||||||  |||||| |||||||  ||||||||||||||||    
T  27214312 gtgttcattagtttcaggggtaccgacactcgacacggtttcaccggtaatctctataaagctctttgtgacaaaggaatccgaaccttcattgatgaca 27214411  T
Q  244 atgatcttcaaagaggagatgaaatcaca 272  Q
    | || ||||| ||||| || |||||||||    
T  27214412 aggagcttcagagaggtgacgaaatcaca 27214440  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #48
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 144 - 272
Target Start/End: Complemental strand, 27234916 - 27234788
Alignment:
Q  144 gtgttcctcagttttaggggcactgacactcggtacggttttacgggcaatctctacaaggctcttattgacaagggaatccataccttcattgatgaca 243  Q
    |||||| | ||||| ||||| || ||||||||  ||||||| || || |||||||| || ||||||  |||||| |||||||  ||||||||||||||||    
T  27234916 gtgttcattagtttcaggggtaccgacactcgacacggtttcaccggtaatctctataaagctctttgtgacaaaggaatccgaaccttcattgatgaca 27234817  T
Q  244 atgatcttcaaagaggagatgaaatcaca 272  Q
    | || ||||| ||||| || |||||||||    
T  27234816 aggagcttcagagaggtgacgaaatcaca 27234788  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #49
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 114 - 297
Target Start/End: Original strand, 28226815 - 28226998
Alignment:
Q  114 tcttcattttcttatggattcacttaccaagtgttcctcagttttaggggcactgacactcggtacggttttacgggcaatctctacaaggctcttattg 213  Q
    ||||| || |||||||||||||| ||  | |||||||| |||||||| || | ||||||||| || |||||||| || ||||||||||  | ||||  |     
T  28226815 tcttccttctcttatggattcacctatgacgtgttccttagttttagaggtattgacactcgttatggttttactggaaatctctacagtgatctttgta 28226914  T
Q  214 acaagggaatccataccttcattgatgacaatgatcttcaaagaggagatgaaatcacaccatcactcatcaaggccattgaag 297  Q
    | |||||||| || || ||| ||||||| |  || |||||| |||| |||||||| ||| |||||||  |||||| ||||||||    
T  28226915 agaagggaattcacacattctttgatgatagagagcttcaaggaggtgatgaaataacatcatcacttttcaaggtcattgaag 28226998  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #50
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 144 - 274
Target Start/End: Original strand, 25071554 - 25071684
Alignment:
Q  144 gtgttcctcagttttaggggcactgacactcggtacggttttacgggcaatctctacaaggctcttattgacaagggaatccataccttcattgatgaca 243  Q
    |||||| | ||||| ||||| || |||||||| | ||||||||| || ||||| || || ||||||  |||||| |||||||| ||||| ||||||||||    
T  25071554 gtgttcattagtttcaggggtaccgacactcgattcggttttaccggtaatctttataaagctctttctgacaaaggaatccacacctttattgatgaca 25071653  T
Q  244 atgatcttcaaagaggagatgaaatcacacc 274  Q
    | || ||| | ||||| || |||||||||||    
T  25071654 aagagcttaagagaggtgacgaaatcacacc 25071684  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #51
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 147 - 297
Target Start/End: Original strand, 28242702 - 28242852
Alignment:
Q  147 ttcctcagttttaggggcactgacactcggtacggttttacgggcaatctctacaaggctcttattgacaagggaatccataccttcattgatgacaatg 246  Q
    ||||| |||||||| || | ||||||||| || |||||||| || ||||||||||| | ||||  | | |||||||| |  ||||||||||||||||  |    
T  28242702 ttccttagttttagaggtagtgacactcgttatggttttactggaaatctctacaaagatctttgtaagaagggaattcgcaccttcattgatgacagag 28242801  T
Q  247 atcttcaaagaggagatgaaatcacaccatcactcatcaaggccattgaag 297  Q
    | |||| | |||| ||  |||| |||||||||||  |||||||||||||||    
T  28242802 aacttccaggaggtgacaaaataacaccatcacttttcaaggccattgaag 28242852  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #52
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 189 - 274
Target Start/End: Original strand, 26617266 - 26617351
Alignment:
Q  189 ggcaatctctacaaggctcttattgacaagggaatccataccttcattgatgacaatgatcttcaaagaggagatgaaatcacacc 274  Q
    ||||||||||| || ||||||  |||||| ||| |||  ||||||||||||||||| || ||||| ||||| ||||||||||||||    
T  26617266 ggcaatctctataaagctctttgtgacaaaggagtccgaaccttcattgatgacaaggagcttcagagaggtgatgaaatcacacc 26617351  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #53
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 189 - 274
Target Start/End: Original strand, 26723194 - 26723279
Alignment:
Q  189 ggcaatctctacaaggctcttattgacaagggaatccataccttcattgatgacaatgatcttcaaagaggagatgaaatcacacc 274  Q
    ||||||||||| || ||||||  |||||| ||| |||  ||||||||||||||||| || ||||| ||||| ||||||||||||||    
T  26723194 ggcaatctctataaagctctttgtgacaaaggagtccgaaccttcattgatgacaaggagcttcagagaggtgatgaaatcacacc 26723279  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #54
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 153 - 274
Target Start/End: Original strand, 26959069 - 26959190
Alignment:
Q  153 agttttaggggcactgacactcggtacggttttacgggcaatctctacaaggctcttattgacaagggaatccataccttcattgatgacaatgatcttc 252  Q
    ||||| |||||||| |||||||| | | |||| || || || ||||| || ||||||  |||||| |||||| | ||||||||||||||||| || |||     
T  26959069 agtttcaggggcaccgacactcgattcagtttcaccggtaacctctataaagctctttctgacaaaggaatcgacaccttcattgatgacaaagagctta 26959168  T
Q  253 aaagaggagatgaaatcacacc 274  Q
    ||| ||| ||||||||||||||    
T  26959169 aaaaaggggatgaaatcacacc 26959190  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #55
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 144 - 281
Target Start/End: Complemental strand, 27665409 - 27665272
Alignment:
Q  144 gtgttcctcagttttaggggcactgacactcggtacggttttacgggcaatctctacaaggctcttattgacaagggaatccataccttcattgatgaca 243  Q
    |||||| | ||||| ||||| || |||||||| |  ||||| || || || ||||| |||||||||  |||||| |||||||| ||||||||||||||||    
T  27665409 gtgttcattagtttcaggggtaccgacactcgatttggtttcaccggtaacctctataaggctctttctgacaaaggaatccacaccttcattgatgaca 27665310  T
Q  244 atgatcttcaaagaggagatgaaatcacaccatcactc 281  Q
    | || |||| ||  || || ||||||||||| ||||||    
T  27665309 aggagcttccaactggtgacgaaatcacaccttcactc 27665272  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #56
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 109 - 297
Target Start/End: Original strand, 26936954 - 26937142
Alignment:
Q  109 catcctcttcattttcttatggattcacttaccaagtgttcctcagttttaggggcactgacactcggtacggttttacgggcaatctctacaaggctct 208  Q
    |||| ||||| || |||||||||||||| ||  | |||||||||||||| || ||||| |||||||| | |  |||||  ||  |||| ||||| |||||    
T  26936954 catcatcttccttctcttatggattcacctatgacgtgttcctcagtttcagaggcaccgacactcgcttccattttattggtcatctttacaaagctct 26937053  T
Q  209 tattgacaagggaatccataccttcattgatgacaatgatcttcaaagaggagatgaaatcacaccatcactcatcaaggccattgaag 297  Q
    |  |||    ||||| |  ||||||||||||||||| || || ||  ||||||| |||||||||||||||||  ||||||| |||||||    
T  26937054 ttgtgattgtggaattcgcaccttcattgatgacaaggagctccatggaggagaagaaatcacaccatcacttgtcaaggcaattgaag 26937142  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #57
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 193 - 296
Target Start/End: Original strand, 26811453 - 26811556
Alignment:
Q  193 atctctacaaggctcttattgacaagggaatccataccttcattgatgacaatgatcttcaaagaggagatgaaatcacaccatcactcatcaaggccat 292  Q
    ||||||| || ||||||  |||||| |||||||  ||||||||||||||||| || ||||| ||||| || ||||||||||| || ||| |||||  |||    
T  26811453 atctctataaagctctttgtgacaaaggaatccgaaccttcattgatgacaaggagcttcagagaggtgacgaaatcacaccttcgctcctcaagagcat 26811552  T
Q  293 tgaa 296  Q
    ||||    
T  26811553 tgaa 26811556  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #58
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 168 - 287
Target Start/End: Original strand, 26949580 - 26949699
Alignment:
Q  168 gacactcggtacggttttacgggcaatctctacaaggctcttattgacaagggaatccataccttcattgatgacaatgatcttcaaagaggagatgaaa 267  Q
    |||||||| | |||||| || || |||||||| || |||||   ||||||||||||||  |||||||||||||| || || ||||| | ||| || ||||    
T  26949580 gacactcgattcggtttcaccggtaatctctataaagctctctctgacaagggaatccgaaccttcattgatgataaggagcttcagaaaggtgacgaaa 26949679  T
Q  268 tcacaccatcactcatcaag 287  Q
    ||||||| |||||| |||||    
T  26949680 tcacaccttcactcctcaag 26949699  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #59
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 113 - 199
Target Start/End: Complemental strand, 26342257 - 26342171
Alignment:
Q  113 ctcttcattttcttatggattcacttaccaagtgttcctcagttttaggggcactgacactcggtacggttttacgggcaatctcta 199  Q
    ||||||||| || ||||||||||| ||  | |||||||||| ||||||||||| || |||||| || |||||||| |||||| ||||    
T  26342257 ctcttcattctcatatggattcacatatgatgtgttcctcaattttaggggcattggcactcgctatggttttactggcaatatcta 26342171  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #60
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 11 - 43
Target Start/End: Complemental strand, 27338482 - 27338450
Alignment:
Q  11 cacagaccacaaaaacttactcattcatattct 43  Q
    |||||||||||||||||||||||||||||||||    
T  27338482 cacagaccacaaaaacttactcattcatattct 27338450  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #61
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 11 - 43
Target Start/End: Complemental strand, 27399222 - 27399190
Alignment:
Q  11 cacagaccacaaaaacttactcattcatattct 43  Q
    |||||||||||||||||||||||||||||||||    
T  27399222 cacagaccacaaaaacttactcattcatattct 27399190  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #62
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 212 - 296
Target Start/End: Complemental strand, 28491744 - 28491660
Alignment:
Q  212 tgacaagggaatccataccttcattgatgacaatgatcttcaaagaggagatgaaatcacaccatcactcatcaaggccattgaa 296  Q
    |||||| ||| ||| ||| ||||| || ||| | || ||||||| ||| || ||||||||||||||||||||||| |||||||||    
T  28491744 tgacaaaggagtccgtactttcatggacgacgaggagcttcaaaaaggtgaagaaatcacaccatcactcatcaaagccattgaa 28491660  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #63
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 212 - 296
Target Start/End: Complemental strand, 29804154 - 29804070
Alignment:
Q  212 tgacaagggaatccataccttcattgatgacaatgatcttcaaagaggagatgaaatcacaccatcactcatcaaggccattgaa 296  Q
    |||||| ||| ||| ||| ||||| || ||| | || ||||||| ||| || ||||||||||||||||||||||| |||||||||    
T  29804154 tgacaaaggagtccgtactttcatggacgacgaggagcttcaaaaaggtgaagaaatcacaccatcactcatcaaagccattgaa 29804070  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #64
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 223 - 297
Target Start/End: Original strand, 28149912 - 28149985
Alignment:
Q  223 tccataccttcattgatgacaatgatcttcaaagaggagatgaaatcacaccatcactcatcaaggccattgaag 297  Q
    |||| |||||||||||||| |  || ||| || |||| || |||||||||||||||||| |||||||||||||||    
T  28149912 tccacaccttcattgatgatacggagctttaacgaggggacgaaatcacaccatcactc-tcaaggccattgaag 28149985  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #65
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 219 - 297
Target Start/End: Original strand, 29467797 - 29467875
Alignment:
Q  219 ggaatccataccttcattgatgacaatgatcttcaaagaggagatgaaatcacaccatcactcatcaaggccattgaag 297  Q
    ||||| || |||||||| |||||  | || ||||||| ||| || ||||||||||||||||||||||| || |||||||    
T  29467797 ggaattcacaccttcatggatgatgaagaacttcaaaaaggcgaagaaatcacaccatcactcatcaaagctattgaag 29467875  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #66
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 168 - 297
Target Start/End: Original strand, 26974971 - 26975100
Alignment:
Q  168 gacactcggtacggttttacgggcaatctctacaaggctcttattgacaagggaatccataccttcattgatgacaatgatcttcaaagaggagatgaaa 267  Q
    |||||||| | |||||| || || || ||||| || ||||||  |||||| |||||| | | ||||||||||||||| || ||| ||| ||| || ||||    
T  26974971 gacactcgattcggtttcaccggtaacctctataaagctctttctgacaaaggaatcaacatcttcattgatgacaaggagcttaaaaaaggggacgaaa 26975070  T
Q  268 tcacaccatcactcatcaaggccattgaag 297  Q
    ||||||| || ||| |||||  ||||||||    
T  26975071 tcacaccttcgctcctcaagagcattgaag 26975100  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #67
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 253 - 297
Target Start/End: Complemental strand, 25507092 - 25507048
Alignment:
Q  253 aaagaggagatgaaatcacaccatcactcatcaaggccattgaag 297  Q
    |||||||||||||||||||||||||| || |||  ||||||||||    
T  25507092 aaagaggagatgaaatcacaccatcagtcgtcatcgccattgaag 25507048  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0349 (Bit Score: 194; Significance: 1e-105; HSPs: 3)
Name: scaffold0349
Description:

Target: scaffold0349; HSP #1
Raw Score: 194; E-Value: 1e-105
Query Start/End: Original strand, 12 - 295
Target Start/End: Complemental strand, 3844 - 3563
Alignment:
Q  12 acagaccacaaaaacttactcattcatattctgcattctcaaactcnnnnnnncatccaatttctcacaattttcatggctatgcagtctccttcctcat 111  Q
    |||||||||||||| |||| ||||||||||||||||||||||||||       ||||| ||||||| ||||| |||||||||| || || ||||||||||    
T  3844 acagaccacaaaaatttac-cattcatattctgcattctcaaactctttttt-catcctatttctctcaattgtcatggctatacaatcaccttcctcat 3747  T
Q  112 cctcttcattttcttatggattcacttaccaagtgttcctcagttttaggggcactgacactcggtacggttttacgggcaatctctacaaggctcttat 211  Q
    ||||||||||||| |||||||||||||||||||||||||| |||||||||||||||||||||||| |||||||||| || |||||||||||||||||||     
T  3746 cctcttcattttcctatggattcacttaccaagtgttccttagttttaggggcactgacactcggcacggttttaccggaaatctctacaaggctcttac 3647  T
Q  212 tgacaagggaatccataccttcattgatgacaatgatcttcaaagaggagatgaaatcacaccatcactcatcaaggccattga 295  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||    
T  3646 tgacaagggaatccataccttcattgatgacaatgatcttcaaagaggagatgaaatcacaccatcactcctcaaggccattga 3563  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0349; HSP #2
Raw Score: 188; E-Value: 1e-102
Query Start/End: Original strand, 22 - 295
Target Start/End: Complemental strand, 14767 - 14496
Alignment:
Q  22 aaaacttactcattcatattctgcattctcaaactcnnnnnnncatccaatttctcacaattttcatggctatgcagtctccttcctcatcctcttcatt 121  Q
    |||| |||||||||||||||||||||||||||||||       ||||| ||||||| ||||| |||||||||| || || |||||||||||| |||||||    
T  14767 aaaatttactcattcatattctgcattctcaaactcttttt--catcctatttctctcaattctcatggctatacaatcaccttcctcatccacttcatt 14670  T
Q  122 ttcttatggattcacttaccaagtgttcctcagttttaggggcactgacactcggtacggttttacgggcaatctctacaaggctcttattgacaaggga 221  Q
    ||| |||||||||||||||||||||||| |||||||||||||||||||||||||| |||||||||| || ||||||||||||||||||| ||||||||||    
T  14669 ttcctatggattcacttaccaagtgttcatcagttttaggggcactgacactcggcacggttttaccggaaatctctacaaggctcttactgacaaggga 14570  T
Q  222 atccataccttcattgatgacaatgatcttcaaagaggagatgaaatcacaccatcactcatcaaggccattga 295  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||    
T  14569 atccataccttcattgatgacaatgatcttcaaagaggagatgaaatcacaccatcactcctcaaggccattga 14496  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0349; HSP #3
Raw Score: 92; E-Value: 1e-44
Query Start/End: Original strand, 11 - 176
Target Start/End: Complemental strand, 8225 - 8061
Alignment:
Q  11 cacagaccacaaaaacttactcattcatattctgcattctcaaactcnnnnnnncatccaatttctcacaattttcatggctatgcagtctccttcctca 110  Q
    |||||| |||||||| | |||||||||||||||||||||||||||||       ||||| ||||||| ||||| |||||||||| || || |||||||||    
T  8225 cacagaacacaaaaattcactcattcatattctgcattctcaaactctttttt-catcctatttctctcaattctcatggctatacaatcaccttcctca 8127  T
Q  111 tcctcttcattttcttatggattcacttaccaagtgttcctcagttttaggggcactgacactcgg 176  Q
    ||||||||||| ||  ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  8126 tcctcttcattctcccatggattcacttaccaagtgttcctcagttttaggggcactgacactcgg 8061  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0277 (Bit Score: 181; Significance: 9e-98; HSPs: 2)
Name: scaffold0277
Description:

Target: scaffold0277; HSP #1
Raw Score: 181; E-Value: 9e-98
Query Start/End: Original strand, 11 - 297
Target Start/End: Complemental strand, 14056 - 13771
Alignment:
Q  11 cacagaccacaaaaacttactcattcatattctgcattctcaaactcnnnnnnncatccaatttctcacaattttcatggctatgcagtctccttcctca 110  Q
    ||||||||||||||||  |||||||||||||||| ||||||||||||       ||||||||||||| ||||| ||||||||||||| |  ||||||||     
T  14056 cacagaccacaaaaacaaactcattcatattctgaattctcaaactctttttt-catccaatttctctcaattatcatggctatgcaattaccttcctct 13958  T
Q  111 tcctcttcattttcttatggattcacttaccaagtgttcctcagttttaggggcactgacactcggtacggttttacgggcaatctctacaaggctctta 210  Q
    |||||||||||||| | || |||||||||||||||||||||||||||||||||||||||||||||  |||||||||| ||||||||||||||||||||||    
T  13957 tcctcttcattttcctctgcattcacttaccaagtgttcctcagttttaggggcactgacactcgccacggttttaccggcaatctctacaaggctctta 13858  T
Q  211 ttgacaagggaatccataccttcattgatgacaatgatcttcaaagaggagatgaaatcacaccatcactcatcaaggccattgaag 297  Q
     ||||||||||||| | |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| ||||    
T  13857 ctgacaagggaatcaaaaccttcattgatgacaatgatcttcaaagaggagatgaaatcacaccatcactcctcaaggccatcgaag 13771  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0277; HSP #2
Raw Score: 164; E-Value: 1e-87
Query Start/End: Original strand, 11 - 295
Target Start/End: Complemental strand, 5100 - 4812
Alignment:
Q  11 cacagaccacaaaaacttactcatt-----catattctgcattctcaaactcnnnnnnncatccaatttctcacaattttcatggctatgcagtctcctt 105  Q
    ||||||||||||||||||| |||||     ||||||||| ||||||||||||       ||||||||||||| ||||| | |||||||| || || ||||    
T  5100 cacagaccacaaaaacttattcattaaattcatattctgaattctcaaactctttttt-catccaatttctctcaattcttatggctatacaatcacctt 5002  T
Q  106 cctcatcctcttcattttcttatggattcacttaccaagtgttcctcagttttaggggcactgacactcggtacggttttacgggcaatctctacaaggc 205  Q
    ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |||||||||  |||||||||| || ||||||||||||||    
T  5001 cctcatcctcttcattttcctatggattcacttaccaagtgttcctcagttttaggggcattgacactcgccacggttttaccggaaatctctacaaggc 4902  T
Q  206 tcttattgacaagggaatccataccttcattgatgacaatgatcttcaaagaggagatgaaatcacaccatcactcatcaaggccattga 295  Q
    ||||| ||||||||||||| | |||||||||||||||||||||||||||||||||||||||||||||||||| |||  ||||||||||||    
T  4901 tcttactgacaagggaatcaaaaccttcattgatgacaatgatcttcaaagaggagatgaaatcacaccatccctccgcaaggccattga 4812  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1254 (Bit Score: 163; Significance: 5e-87; HSPs: 1)
Name: scaffold1254
Description:

Target: scaffold1254; HSP #1
Raw Score: 163; E-Value: 5e-87
Query Start/End: Original strand, 11 - 297
Target Start/End: Complemental strand, 334 - 56
Alignment:
Q  11 cacagaccacaaaaacttactcattcatattctgcattctcaaactcnnnnnnncatccaatttctcacaattttcatggctatgcagtctccttcctca 110  Q
    |||||||||||||||||||||||||||||||||       |||||||       |||| |||||||| ||||| ||||||||||||| || ||| ||||     
T  334 cacagaccacaaaaacttactcattcatattct-------caaactctttttt-catctaatttctctcaattctcatggctatgcaatcacctccctct 243  T
Q  111 tcctcttcattttcttatggattcacttaccaagtgttcctcagttttaggggcactgacactcggtacggttttacgggcaatctctacaaggctctta 210  Q
    |||||||||||||| |||| ||||||||||||||||||||| |||||||||||||||||||||||  |||||||||| ||||||||||||||||||||||    
T  242 tcctcttcattttcatatgcattcacttaccaagtgttccttagttttaggggcactgacactcgccacggttttaccggcaatctctacaaggctctta 143  T
Q  211 ttgacaagggaatccataccttcattgatgacaatgatcttcaaagaggagatgaaatcacaccatcactcatcaaggccattgaag 297  Q
     ||||||||||||| | |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| ||||    
T  142 ctgacaagggaatcaaaaccttcattgatgacaatgatcttcaaagaggagatgaaatcacaccatcactcctcaaggccatcgaag 56  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0419 (Bit Score: 163; Significance: 5e-87; HSPs: 1)
Name: scaffold0419
Description:

Target: scaffold0419; HSP #1
Raw Score: 163; E-Value: 5e-87
Query Start/End: Original strand, 11 - 297
Target Start/End: Original strand, 7295 - 7573
Alignment:
Q  11 cacagaccacaaaaacttactcattcatattctgcattctcaaactcnnnnnnncatccaatttctcacaattttcatggctatgcagtctccttcctca 110  Q
    |||||||||||||||||||||||||||||||||       |||||||       |||| |||||||| ||||| ||||||||||||| || ||| ||||     
T  7295 cacagaccacaaaaacttactcattcatattct-------caaactctttttt-catctaatttctctcaattctcatggctatgcaatcacctccctct 7386  T
Q  111 tcctcttcattttcttatggattcacttaccaagtgttcctcagttttaggggcactgacactcggtacggttttacgggcaatctctacaaggctctta 210  Q
    |||||||||||||| |||| ||||||||||||||||||||| |||||||||||||||||||||||  |||||||||| ||||||||||||||||||||||    
T  7387 tcctcttcattttcatatgcattcacttaccaagtgttccttagttttaggggcactgacactcgccacggttttaccggcaatctctacaaggctctta 7486  T
Q  211 ttgacaagggaatccataccttcattgatgacaatgatcttcaaagaggagatgaaatcacaccatcactcatcaaggccattgaag 297  Q
     ||||||||||||| | |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| ||||    
T  7487 ctgacaagggaatcaaaaccttcattgatgacaatgatcttcaaagaggagatgaaatcacaccatcactcctcaaggccatcgaag 7573  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 132; Significance: 1e-68; HSPs: 8)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 132; E-Value: 1e-68
Query Start/End: Original strand, 13 - 297
Target Start/End: Complemental strand, 18699807 - 18699526
Alignment:
Q  13 cagaccacaaaaacttactcattcatattctgcattctcaaactcnnnnnnncatccaatttctcacaattttcatggctatgcagtctccttcctcatc 112  Q
    |||||||||||||||||  |  |||||||||||||||||||||||       |||| | |||||| ||||| ||||||||||||| || |||||||||||    
T  18699807 cagaccacaaaaacttaacc--tcatattctgcattctcaaactctttttt-catctagtttctctcaattctcatggctatgcaatcaccttcctcatc 18699711  T
Q  113 ctcttcattttcttatggattcacttaccaagtgttcctcagttttaggggcactgacactcggtacggttttacgggcaatctctacaaggctcttatt 212  Q
    |||||||||||| ||| ||||||||||||||||||||||||| || |||||||||||||||||  |||||||||| ||| |||||||||| ||||||| |    
T  18699710 ctcttcattttcctatcgattcacttaccaagtgttcctcagcttcaggggcactgacactcgtgacggttttactggccatctctacaaagctcttact 18699611  T
Q  213 gacaagggaatccataccttcattgatgacaatgatcttcaaagaggagatgaaatcacaccatcactcatcaaggccattgaag 297  Q
    |||||||||||||| |||||||||||||||  ||| || ||||| || |||||||||| ||||||||||  ||| ||||||||||    
T  18699610 gacaagggaatccacaccttcattgatgaccgtgacctgcaaagtggggatgaaatcaaaccatcactcgacaatgccattgaag 18699526  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 130; E-Value: 2e-67
Query Start/End: Original strand, 11 - 297
Target Start/End: Complemental strand, 18731913 - 18731630
Alignment:
Q  11 cacagaccacaaaaacttactcattcatattctgcattctcaaactcnnnnnnncatccaatttctcacaattttcatggctatgcagtctccttcctca 110  Q
    |||| ||||||||||||||  |  |||||||||||||||||||||||       |||||| |||||| | ||||||||||||||||| || |||||||||    
T  18731913 cacataccacaaaaacttaaac--tcatattctgcattctcaaactctttttt-catccagtttctctcgattttcatggctatgcaatcaccttcctca 18731817  T
Q  111 tcctcttcattttcttatggattcacttaccaagtgttcctcagttttaggggcactgacactcggtacggttttacgggcaatctctacaaggctctta 210  Q
    |||||||||||||| ||| ||||||||||||||||||||||||| || ||||||| |||||||||  |||||||||| ||| |||||||||  |||||||    
T  18731816 tcctcttcattttcctatcgattcacttaccaagtgttcctcagcttcaggggcagtgacactcgtgacggttttactggccatctctacagagctctta 18731717  T
Q  211 ttgacaagggaatccataccttcattgatgacaatgatcttcaaagaggagatgaaatcacaccatcactcatcaaggccattgaag 297  Q
     ||||||||||||||| |||||||||||||||  ||| || |||||||| |||||||||| ||||||||||  ||| ||||||||||    
T  18731716 ctgacaagggaatccacaccttcattgatgaccgtgacctgcaaagaggggatgaaatcaaaccatcactcgacaatgccattgaag 18731630  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 126; E-Value: 6e-65
Query Start/End: Original strand, 11 - 297
Target Start/End: Complemental strand, 18679976 - 18679693
Alignment:
Q  11 cacagaccacaaaaacttactcattcatattctgcattctcaaactcnnnnnnncatccaatttctcacaattttcatggctatgcagtctccttcctca 110  Q
    |||| ||||||||||||||  |  |||||||||||||||||||||||       |||||| |||||| | ||||||||||||||||| || |||||||||    
T  18679976 cacataccacaaaaacttaaac--tcatattctgcattctcaaactctttttt-catccagtttctctctattttcatggctatgcaatcaccttcctca 18679880  T
Q  111 tcctcttcattttcttatggattcacttaccaagtgttcctcagttttaggggcactgacactcggtacggttttacgggcaatctctacaaggctctta 210  Q
    | |||||||||||| ||| ||||||||||||||||||||||||| || ||||||| |||||||||  |||||||||| ||  ||||||||||||||||||    
T  18679879 ttctcttcattttcctatcgattcacttaccaagtgttcctcagcttcaggggcagtgacactcgtaacggttttactggtcatctctacaaggctctta 18679780  T
Q  211 ttgacaagggaatccataccttcattgatgacaatgatcttcaaagaggagatgaaatcacaccatcactcatcaaggccattgaag 297  Q
     |||||| |||||||| |||||||||||||||  ||| || |||||||| |||||||||| ||||||||||  ||| ||||||||||    
T  18679779 ctgacaaaggaatccacaccttcattgatgaccgtgacctgcaaagaggggatgaaatcaaaccatcactcgacaatgccattgaag 18679693  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 123; E-Value: 4e-63
Query Start/End: Original strand, 79 - 297
Target Start/End: Complemental strand, 18724429 - 18724211
Alignment:
Q  79 caattttcatggctatgcagtctccttcctcatcctcttcattttcttatggattcacttaccaagtgttcctcagttttaggggcactgacactcggta 178  Q
    ||||| ||||||||||||| || ||||||||||||||||||||||| ||| ||||||||||||||||||||||||| || ||||||| |||||||||  |    
T  18724429 caattctcatggctatgcaatcaccttcctcatcctcttcattttcctatcgattcacttaccaagtgttcctcagcttcaggggcagtgacactcgtaa 18724330  T
Q  179 cggttttacgggcaatctctacaaggctcttattgacaagggaatccataccttcattgatgacaatgatcttcaaagaggagatgaaatcacaccatca 278  Q
    ||||||||| ||  |||||||||||||||||| ||||||||||||||| |||||||||||||||  ||| || |||||||| |||||||||| |||||||    
T  18724329 cggttttactggtcatctctacaaggctcttactgacaagggaatccacaccttcattgatgaccgtgacctgcaaagaggggatgaaatcaaaccatca 18724230  T
Q  279 ctcatcaaggccattgaag 297  Q
    |||  ||| ||||||||||    
T  18724229 ctcgacaatgccattgaag 18724211  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 122; E-Value: 1e-62
Query Start/End: Original strand, 11 - 281
Target Start/End: Complemental strand, 18655886 - 18655619
Alignment:
Q  11 cacagaccacaaaaacttactcattcatattctgcattctcaaactcnnnnnnncatccaatttctcacaattttcatggctatgcagtctccttcctca 110  Q
    |||| ||||||||||||||  |  |||||||||||||||||||||||       |||||| |||||| ||||||||||||||| ||| || |||||||||    
T  18655886 cacataccacaaaaacttaaac--tcatattctgcattctcaaactctttttt-catccagtttctctcaattttcatggctaggcaatcaccttcctca 18655790  T
Q  111 tcctcttcattttcttatggattcacttaccaagtgttcctcagttttaggggcactgacactcggtacggttttacgggcaatctctacaaggctctta 210  Q
    |||||||||||||| ||| ||||||||||||||||||||||||| || ||||||| |||||||||  |||||||||| ||  |||||||||| |||||||    
T  18655789 tcctcttcattttcctatcgattcacttaccaagtgttcctcagcttcaggggcagtgacactcgtaacggttttactgggcatctctacaaagctctta 18655690  T
Q  211 ttgacaagggaatccataccttcattgatgacaatgatcttcaaagaggagatgaaatcacaccatcactc 281  Q
     ||||||||||||||| |||||||||||||||  ||| || ||||| || |||||||||| ||||||||||    
T  18655689 ctgacaagggaatccacaccttcattgatgaccgtgagctgcaaagtggggatgaaatcaaaccatcactc 18655619  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 16 - 247
Target Start/End: Complemental strand, 17989454 - 17989226
Alignment:
Q  16 accacaaaaacttactcattcatattctgcattctcaaactcnnnnnnncatccaatttctcacaattttcatggctatgcagtctccttcctcatcctc 115  Q
    ||||||||||| | ||||||||||||||||||||||||||||       ||||  ||||||| ||||| ||||||| ||||| |  |||| ||  |||||    
T  17989454 accacaaaaacatcctcattcatattctgcattctcaaactcttct---catcttatttctctcaattctcatggccatgcaattacctttctattcctc 17989358  T
Q  116 ttcattttcttatggattcacttaccaagtgttcctcagttttaggggcactgacactcggtacggttttacgggcaatctctacaaggctcttattgac 215  Q
    ||||||||| |||| ||||| |||| | |||||||||| || || |||||| ||||||||||||||||| || ||||||||||  |||||||||||||||    
T  17989357 ttcattttcctatgcattcagttacgatgtgttcctcatttgtaagggcaccgacactcggtacggtttcaccggcaatctcttgaaggctcttattgac 17989258  T
Q  216 aagggaatccataccttcattgatgacaatga 247  Q
    |||||||| | |||||||  ||||||| ||||    
T  17989257 aagggaattcgtaccttccatgatgacgatga 17989226  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 16 - 247
Target Start/End: Original strand, 18073535 - 18073763
Alignment:
Q  16 accacaaaaacttactcattcatattctgcattctcaaactcnnnnnnncatccaatttctcacaattttcatggctatgcagtctccttcctcatcctc 115  Q
    ||||||||||| | ||||||||||||||||||||||||||||       ||||  ||||||| ||||| ||||||| ||||| |  |||| ||  |||||    
T  18073535 accacaaaaacatcctcattcatattctgcattctcaaactcttct---catcttatttctctcaattctcatggccatgcaattacctttctattcctc 18073631  T
Q  116 ttcattttcttatggattcacttaccaagtgttcctcagttttaggggcactgacactcggtacggttttacgggcaatctctacaaggctcttattgac 215  Q
    ||||||||| |||| ||||| |||| | |||||||||| || || |||||| ||||||||||||||||| || ||||||||||  |||||||||||||||    
T  18073632 ttcattttcctatgcattcagttacgatgtgttcctcatttgtaagggcaccgacactcggtacggtttcaccggcaatctcttgaaggctcttattgac 18073731  T
Q  216 aagggaatccataccttcattgatgacaatga 247  Q
    |||||||| | |||||||  ||||||| ||||    
T  18073732 aagggaattcgtaccttccatgatgacgatga 18073763  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 153 - 293
Target Start/End: Complemental strand, 5091237 - 5091097
Alignment:
Q  153 agttttaggggcactgacactcggtacggttttacgggcaatctctacaaggctcttattgacaagggaatccataccttcattgatgacaatgatcttc 252  Q
    |||||||| ||||| |||||||| ||||||||||| || ||||||||  | |||||   || ||||||||| || ||||||||||||||||  || ||||    
T  5091237 agttttagaggcaccgacactcgttacggttttactggaaatctctatgaagctctacgtgtcaagggaattcacaccttcattgatgacagagagcttc 5091138  T
Q  253 aaagaggagatgaaatcacaccatcactcatcaaggccatt 293  Q
    |  |||||||  |||| ||||| |||||  |||||||||||    
T  5091137 agcgaggagaccaaataacaccgtcacttctcaaggccatt 5091097  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 96; Significance: 5e-47; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 96; E-Value: 5e-47
Query Start/End: Original strand, 65 - 296
Target Start/End: Complemental strand, 28164720 - 28164489
Alignment:
Q  65 catccaatttctcacaattttcatggctatgcagtctccttcctcatcctcttcattttcttatggattcacttaccaagtgttcctcagttttaggggc 164  Q
    ||||||||||||  ||||| |||||||||| |  || | |||||| ||||||||| |||| ||||||||||| |||||||||||||||||||||||||||    
T  28164720 catccaatttctgtcaattctcatggctatacgatcgcattcctcttcctcttcaatttcctatggattcacataccaagtgttcctcagttttaggggc 28164621  T
Q  165 actgacactcggtacggttttacgggcaatctctacaaggctcttattgacaagggaatccataccttcattgatgacaatgatcttcaaagaggagatg 264  Q
    | |||||||||  ||||||| || ||| ||||||| ||||| |||   ||||||||||| || || |||||||||||   ||||||| | |||||||| |    
T  28164620 agtgacactcgtgacggtttcactggccatctctataaggcccttgacgacaagggaattcacacattcattgatgattgtgatcttgagagaggagaag 28164521  T
Q  265 aaatcacaccatcactcatcaaggccattgaa 296  Q
    |||||||||| ||| |||||||||||||||||    
T  28164520 aaatcacaccgtcattcatcaaggccattgaa 28164489  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 85 - 297
Target Start/End: Complemental strand, 268695 - 268483
Alignment:
Q  85 tcatggctatgcagtctccttcctcatcctcttcattttcttatggattcacttaccaagtgttcctcagttttaggggcactgacactcggtacggttt 184  Q
    ||||||||||||| || |||||||| ||||||||| | || ||||||||  | ||||| || |||||||  || || |||  |||||||||  | |||||    
T  268695 tcatggctatgcaatcaccttcctcttcctcttcaatctcatatggatttgcctaccaggtcttcctcaacttcagaggcggtgacactcgtgagggttt 268596  T
Q  185 tacgggcaatctctacaaggctcttattgacaagggaatccataccttcattgatgacaatgatcttcaaagaggagatgaaatcacaccatcactcatc 284  Q
    ||  ||| |||||||||||||||||| ||||||||||||||| ||||||||||||||   ||| ||||||||||| |||||||||| ||||||||||  |    
T  268595 tattggccatctctacaaggctcttactgacaagggaatccacaccttcattgatgatcgtgaacttcaaagaggggatgaaatcaaaccatcactcgac 268496  T
Q  285 aaggccattgaag 297  Q
    || ||||||||||    
T  268495 aatgccattgaag 268483  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 111 - 297
Target Start/End: Complemental strand, 28127992 - 28127805
Alignment:
Q  111 tcctcttcattttcttatggattcacttaccaagtgttcctcagttttaggggcactgacactcggtacggttttacgggcaatctctacaaggctctta 210  Q
    ||||||||| |||| ||||||||||| ||||||||||||||||| || ||||||| |||||||||  ||||||| || ||| ||||||||||||| |||     
T  28127992 tcctcttcaatttcctatggattcacataccaagtgttcctcagcttcaggggcagtgacactcgtgacggtttcactggccatctctacaaggcccttt 28127893  T
Q  211 ttgacaagggaatccataccttcattgatgacaatgatcttcaaagaggag-atgaaatcacaccatcactcatcaaggccattgaag 297  Q
     ||||||||||||||| || |||||||||||   | ||||| | ||||||| |  |||||||||| |||||  | |||||||||||||    
T  28127892 atgacaagggaatccacacattcattgatgattgtaatcttgagagaggagaaaaaaatcacaccgtcacttttaaaggccattgaag 28127805  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 85; Significance: 2e-40; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 85 - 281
Target Start/End: Complemental strand, 29274121 - 29273925
Alignment:
Q  85 tcatggctatgcagtctccttcctcatcctcttcattttcttatggattcacttaccaagtgttcctcagttttaggggcactgacactcggtacggttt 184  Q
    ||||||||||||| || |||||||| ||||||||| | || ||||||||||||||||| || |||||||  ||||| |||  |||||||||  |||||||    
T  29274121 tcatggctatgcaatcaccttcctcttcctcttcaatctcatatggattcacttaccaggtcttcctcaactttagaggcggtgacactcgtgacggttt 29274022  T
Q  185 tacgggcaatctctacaaggctcttattgacaagggaatccataccttcattgatgacaatgatcttcaaagaggagatgaaatcacaccatcactc 281  Q
    ||  ||| ||||||||||| |||||| ||||||||||||||| ||||||||||||||   ||| ||||||||||| |||||||||| | ||||||||    
T  29274021 tattggccatctctacaagactcttactgacaagggaatccacaccttcattgatgatcgtgaacttcaaagaggggatgaaatcaaatcatcactc 29273925  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 125 - 280
Target Start/End: Original strand, 31903727 - 31903882
Alignment:
Q  125 ttatggattcacttaccaagtgttcctcagttttaggggcactgacactcggtacggttttacgggcaatctctacaaggctcttattgacaagggaatc 224  Q
    |||||||||||| ||| | ||||||||||| ||||| |||   |||||||| || |||||||| || ||||||||||| ||||||  ||| |||||||||    
T  31903727 ttatggattcacctacgatgtgttcctcagctttagaggcttagacactcgctatggttttactggaaatctctacaaagctctttatgataagggaatc 31903826  T
Q  225 cataccttcattgatgacaatgatcttcaaagaggagatgaaatcacaccatcact 280  Q
    || ||||| ||||| ||  | || |||||||||||| |||||||||||||||||||    
T  31903827 cacacctttattgacgatgaagaacttcaaagaggacatgaaatcacaccatcact 31903882  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0003 (Bit Score: 82; Significance: 1e-38; HSPs: 1)
Name: scaffold0003
Description:

Target: scaffold0003; HSP #1
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 16 - 247
Target Start/End: Original strand, 59343 - 59571
Alignment:
Q  16 accacaaaaacttactcattcatattctgcattctcaaactcnnnnnnncatccaatttctcacaattttcatggctatgcagtctccttcctcatcctc 115  Q
    ||||||||||| | ||||||||||||||||||||||||||||       ||||  ||||||| ||||| ||||||| ||||| |  |||| ||  |||||    
T  59343 accacaaaaacatcctcattcatattctgcattctcaaactcttct---catcttatttctctcaattctcatggccatgcaattacctttctattcctc 59439  T
Q  116 ttcattttcttatggattcacttaccaagtgttcctcagttttaggggcactgacactcggtacggttttacgggcaatctctacaaggctcttattgac 215  Q
    ||||||||| |||| ||||| |||| | |||||||||| || || |||||| ||||||||||||||||| || ||||||||||  |||||||||||||||    
T  59440 ttcattttcctatgcattcagttacgatgtgttcctcatttgtaagggcaccgacactcggtacggtttcaccggcaatctcttgaaggctcttattgac 59539  T
Q  216 aagggaatccataccttcattgatgacaatga 247  Q
    |||||||| | |||||||  ||||||| ||||    
T  59540 aagggaattcgtaccttccatgatgacgatga 59571  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0038 (Bit Score: 64; Significance: 6e-28; HSPs: 4)
Name: scaffold0038
Description:

Target: scaffold0038; HSP #1
Raw Score: 64; E-Value: 6e-28
Query Start/End: Original strand, 126 - 297
Target Start/End: Original strand, 34602 - 34773
Alignment:
Q  126 tatggattcacttaccaagtgttcctcagttttaggggcactgacactcggtacggttttacgggcaatctctacaaggctcttattgacaagggaatcc 225  Q
    ||||||||||| ||  | |||||||| |||||||| || | ||||||||| || |||||||| |  |||||||| |  ||||||  | ||||||||||||    
T  34602 tatggattcacctatgacgtgttccttagttttagaggtagtgacactcgctatggttttaccgaaaatctctatagagctctttgtcacaagggaatcc 34701  T
Q  226 ataccttcattgatgacaatgatcttcaaagaggagatgaaatcacaccatcactcatcaaggccattgaag 297  Q
    | ||||||||||||||||  || |||||| ||||||||||||| |||||||||||  |||||||||||||||    
T  34702 acaccttcattgatgacagggagcttcaaggaggagatgaaataacaccatcacttttcaaggccattgaag 34773  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0038; HSP #2
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 111 - 297
Target Start/End: Original strand, 116658 - 116844
Alignment:
Q  111 tcctcttcattttcttatggattcacttaccaagtgttcctcagttttaggggcactgacactcggtacggttttacgggcaatctctacaaggctctta 210  Q
    |||||||| ||||| ||||||||||| ||  | |||||||| |||||||| || | ||||||||| || |||||||| || ||||||||||| | ||||     
T  116658 tcctcttccttttcctatggattcacctatgacgtgttccttagttttagaggtagtgacactcgttatggttttactggaaatctctacaaagatcttt 116757  T
Q  211 ttgacaagggaatccataccttcattgatgacaatgatcttcaaagaggagatgaaatcacaccatcactcatcaaggccattgaag 297  Q
     |   ||| |||| | |||||||||||||||||| || |||||| |||| || ||||| ||||| |||||  |||||||||||||||    
T  116758 gtaggaagagaattcgtaccttcattgatgacaaagaccttcaacgaggtgacgaaataacaccgtcacttttcaaggccattgaag 116844  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0038; HSP #3
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 114 - 297
Target Start/End: Original strand, 27313 - 27496
Alignment:
Q  114 tcttcattttcttatggattcacttaccaagtgttcctcagttttaggggcactgacactcggtacggttttacgggcaatctctacaaggctcttattg 213  Q
    ||||| || |||||||||||||| ||  | |||||||| |||||||| || | ||||||||| || |||||||| || ||||||||||  | ||||  |     
T  27313 tcttccttctcttatggattcacctatgacgtgttccttagttttagaggtattgacactcgttatggttttactggaaatctctacagtgatctttgta 27412  T
Q  214 acaagggaatccataccttcattgatgacaatgatcttcaaagaggagatgaaatcacaccatcactcatcaaggccattgaag 297  Q
    | |||||||| || || ||| ||||||| |  || |||||| |||| |||||||| ||| |||||||  |||||| ||||||||    
T  27413 agaagggaattcacacattctttgatgatagagagcttcaaggaggtgatgaaataacatcatcacttttcaaggtcattgaag 27496  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0038; HSP #4
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 147 - 297
Target Start/End: Original strand, 42864 - 43014
Alignment:
Q  147 ttcctcagttttaggggcactgacactcggtacggttttacgggcaatctctacaaggctcttattgacaagggaatccataccttcattgatgacaatg 246  Q
    ||||| |||||||| || | ||||||||| || |||||||| || ||||||||||| | ||||  | | |||||||| |  ||||||||||||||||  |    
T  42864 ttccttagttttagaggtagtgacactcgttatggttttactggaaatctctacaaagatctttgtaagaagggaattcgcaccttcattgatgacagag 42963  T
Q  247 atcttcaaagaggagatgaaatcacaccatcactcatcaaggccattgaag 297  Q
    | |||| | |||| ||  |||| |||||||||||  |||||||||||||||    
T  42964 aacttccaggaggtgacaaaataacaccatcacttttcaaggccattgaag 43014  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0019 (Bit Score: 55; Significance: 1e-22; HSPs: 1)
Name: scaffold0019
Description:

Target: scaffold0019; HSP #1
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 111 - 293
Target Start/End: Complemental strand, 58607 - 58425
Alignment:
Q  111 tcctcttcattttcttatggattcacttaccaagtgttcctcagttttaggggcactgacactcggtacggttttacgggcaatctctacaaggctctta 210  Q
    |||||||| || || ||||||||||| || || |||||||| || ||||| ||   ||||||||| || |||||||| || ||||||||||  ||||||     
T  58607 tcctcttccttctcctatggattcacctatcacgtgttccttagctttagaggttgtgacactcgctatggttttactggaaatctctacagagctcttt 58508  T
Q  211 ttgacaagggaatccataccttcattgatgacaatgatcttcaaagaggagatgaaatcacaccatcactcatcaaggccatt 293  Q
     ||||||||||||||  |||||||| |||||||  || |||||| |||| || ||||| |||||||||||  |||||||||||    
T  58507 gtgacaagggaatccgaaccttcatggatgacagagagcttcaaggaggtgacgaaataacaccatcacttttcaaggccatt 58425  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 47; Significance: 8e-18; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 87 - 297
Target Start/End: Complemental strand, 17994033 - 17993823
Alignment:
Q  87 atggctatgcagtctccttcctcatcctcttcattttcttatggattcacttaccaagtgttcctcagttttaggggcactgacactcggtacggtttta 186  Q
    ||||||||||| || |||||||| || || || || |||||||| ||||  | | | |||||| | ||||| ||||| || || ||||| || ||||| |    
T  17994033 atggctatgcaatcaccttcctcctcttcctccttatcttatggtttcagcttcgatgtgttcattagtttcaggggtaccgatactcgatatggtttca 17993934  T
Q  187 cgggcaatctctacaaggctcttattgacaagggaatccataccttcattgatgacaatgatcttcaaagaggagatgaaatcacaccatcactcatcaa 286  Q
    | || |||||||| || ||||||  |||||||||||| |  |||||||| |||||||| || ||||| ||||| |||||||||||||| || ||| ||||    
T  17993933 ccggtaatctctataaagctctttctgacaagggaattcgaaccttcatcgatgacaaagagcttcagagaggtgatgaaatcacaccgtcgctcctcaa 17993834  T
Q  287 ggccattgaag 297  Q
    |  ||||||||    
T  17993833 gagcattgaag 17993823  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 123 - 297
Target Start/End: Original strand, 3279562 - 3279736
Alignment:
Q  123 tcttatggattcacttaccaagtgttcctcagttttaggggcactgacactcggtacggttttacgggcaatctctacaaggctcttattgacaagggaa 222  Q
    |||||||||||||| ||  | || ||| | ||||||||||||||||||||||| || |||||||| || |||||||| |  ||| | | ||||   |||     
T  3279562 tcttatggattcacctatgacgtattcttgagttttaggggcactgacactcgctatggttttactggaaatctctatagagctttaagtgacggtggat 3279661  T
Q  223 tccataccttcattgatgacaatgatcttcaaagaggagatgaaatcacaccatcactcatcaaggccattgaag 297  Q
    ||   |||||||||||||| |  || |||||  |||| ||||||||||||| ||||||  |||||||||| ||||    
T  3279662 tctgcaccttcattgatgatagggagcttcatggaggtgatgaaatcacacaatcacttgtcaaggccatcgaag 3279736  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 44; Significance: 5e-16; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 182 - 297
Target Start/End: Original strand, 16688944 - 16689059
Alignment:
Q  182 ttttacgggcaatctctacaaggctcttattgacaagggaatccataccttcattgatgacaatgatcttcaaagaggagatgaaatcacaccatcactc 281  Q
    |||||| || ||||| ||||| |||||   |||||||||||||| |  ||||||||||||||| || ||||| ||||| ||  ||||||||||||||||     
T  16688944 ttttactggtaatctgtacaaagctctatgtgacaagggaatccgtgtcttcattgatgacaaggaacttcagagaggtgacaaaatcacaccatcactt 16689043  T
Q  282 atcaaggccattgaag 297  Q
    |||||||| |||||||    
T  16689044 atcaaggcaattgaag 16689059  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University