View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20654_high_23 (Length: 298)
Name: NF20654_high_23
Description: NF20654
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20654_high_23 |
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Alignment Details
Target: chr4 (Bit Score: 260; Significance: 1e-145; HSPs: 6)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 260; E-Value: 1e-145
Query Start/End: Original strand, 10 - 289
Target Start/End: Complemental strand, 39521574 - 39521295
Alignment:
| Q |
10 |
acatcatcatttgcgtttgttaatgcaattgaactctttatgctccctcttcatttaatccccgattcagtagcacgtttcaattacatcggttctaatg |
109 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
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| T |
39521574 |
acatcatcatttgcgtttgttaatgcaattgaactctttatgctccctcttcatttaatccccgattcagtagcacgtttcaattacatcggttctactg |
39521475 |
T |
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| Q |
110 |
gtcggggcttaactacttatagtggcggtttacactcacaacgatcgttggaaaccaaactccgtcttaacgtcggtgaccaaactgtcgatagaggaac |
209 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39521474 |
gtcggggcttaactacttatagtggcggtttacactcacaacgatcgttggaaaccaaactccgtcttaacgtcggtgaccaaactgtcgatagaggaac |
39521375 |
T |
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| Q |
210 |
cgatacattatcgagagaatggttaccagatgacagttatgtaactaatctacaaaacgctaagaatcacttctttgacg |
289 |
Q |
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| T |
39521374 |
cgatacattatcgagagaatggttagcagatgacagttatgtaactaatccacaaaacgctaagaatcgctcctttgacg |
39521295 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 118; E-Value: 3e-60
Query Start/End: Original strand, 10 - 298
Target Start/End: Complemental strand, 39576219 - 39575928
Alignment:
| Q |
10 |
acatcatcatttgcgtttgttaatgcaattgaactctttatgctccctcttcatttaatccccgattcagtagcacgtttcaattacatcggttctaatg |
109 |
Q |
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| T |
39576219 |
acatcatcatttgcgtttgttaatgcaatagaactctttatgcttccggttcatttaatccctgattcaatgccacatttctcttacaaagaatctggtg |
39576120 |
T |
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| Q |
110 |
gtcgggg---cttaactacttatagtggcggtttacactcacaacgatcgttggaaaccaaactccgtcttaacgtcggtgaccaaactgtcgatagagg |
206 |
Q |
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| T |
39576119 |
ttcgaggaggcttatctacttatattggcggtttacactcacaacgagccttggaaacaaaacatcgttttaacgtcggtgggggaaccgttgatagagg |
39576020 |
T |
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| Q |
207 |
aaccgatacattatcgagagaatggttaccagatgacagttatgtaactaatctacaaaacgctaagaatcacttctttgacggtggtattc |
298 |
Q |
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| T |
39576019 |
aactgatactttatcgagagaatggttaccagatgacagatatgtaactaatctacaaaacgctaagaattgctcctttgacggtgatattc |
39575928 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 93; E-Value: 3e-45
Query Start/End: Original strand, 10 - 276
Target Start/End: Complemental strand, 39544367 - 39544104
Alignment:
| Q |
10 |
acatcatcatttgcgtttgttaatgcaattgaactctttatgctccctcttcatttaatccccgattcagtagcacgtttcaattacatcggttctaatg |
109 |
Q |
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||||| |||||||||||| |||||||| ||||||||||||| ||||||||||||||||| ||| ||||| |||| |||||||||||||| | |||| |
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| T |
39544367 |
acatcttcatttgcgttttttaatgcatttgaactctttattctccctcttcatttaatacccaattcaatagctcgtttcaattacattgattctgcca |
39544268 |
T |
|
| Q |
110 |
gtcggggcttaactacttatagtggcggtttacactcacaacgatcgttggaaaccaaactccgtcttaacgtcggtgaccaaactgtcgatagaggaac |
209 |
Q |
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| T |
39544267 |
ttcgaaacttaactacttatagtaatgatttcctctctcaa---tcgttggaaaccatccttggtcttaatgttggtagcggaactgtcgatagaaaaac |
39544171 |
T |
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| Q |
210 |
cgatacattatcgagagaatggttaccagatgacagttatgtaactaatctacaaaacgctaagaat |
276 |
Q |
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| T |
39544170 |
cgatactttatcgagagaatggttaccagatgacagttatataactaatccacaaaacgctaagaat |
39544104 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 14 - 276
Target Start/End: Complemental strand, 39525067 - 39524808
Alignment:
| Q |
14 |
catcatttgcgtttgttaatgcaattgaactctttatgctccctcttcatttaatccccgattcagtagcacgtttcaattacatcggttctaatggtcg |
113 |
Q |
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|||||||||| |||| ||||||||| |||||||||||||||||| |||||||||||||||| ||| | || | |||| |||||| | |||| ||| | |
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| T |
39525067 |
catcatttgcctttgctaatgcaatagaactctttatgctccctgttcatttaatccccgactcaatcgcgcttttccattacaaagagtctactggcag |
39524968 |
T |
|
| Q |
114 |
gggcttaactacttatagtggcggtttacactcacaacgatcgttggaaaccaaactccgtcttaacgtcggtgaccaaactgtcgatagaggaaccgat |
213 |
Q |
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|||| ||||||||||| | ||| | ||| | |||||||||||||||| ||||||||||| || |||| | || ||| |||||| ||| ||| |
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| T |
39524967 |
aaacttatctacttatagtaatgatttcctctctc---gatcgttggaaaccaacctccgtcttaatgttggtggcggaattgttaatagagaaactgat |
39524871 |
T |
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| Q |
214 |
acattatcgagagaatggttaccagatgacagttatgtaactaatctacaaaacgctaagaat |
276 |
Q |
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||| |||| ||||||||||||||||||||||| ||| ||||| ||| ||||||||||||||| |
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| T |
39524870 |
acactatcaagagaatggttaccagatgacagatatataactgatccccaaaacgctaagaat |
39524808 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 12 - 266
Target Start/End: Complemental strand, 39511326 - 39511072
Alignment:
| Q |
12 |
atcatcatttgcgtttgttaatgcaattgaactctttatgctccctcttcatttaatccccgattcagtagcacgtttcaattacatcggttctaatggt |
111 |
Q |
| |
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||||||| | || |||||||| ||||| ||||||||| ||||||| ||||||||||||| |||||||| ||||| | ||||| | |||| | | |
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| T |
39511326 |
atcatcactcgcatttgttaacgcaatagaactctttgtgctccccgttcatttaatccctgattcagtgttgcgttttacttacaaagaatctagttct |
39511227 |
T |
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| Q |
112 |
cggggcttaactacttatagtggcggtttacactcacaacgatcgttggaaaccaaactccgtcttaacgtcggtgaccaaactgtcgatagaggaaccg |
211 |
Q |
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| T |
39511226 |
ccaggcttatctaattatagtggcggtttaaactcacaacgagctttggaaacgaaacatcgtcttaacgtaggcggtgataatgtcactagagaagccg |
39511127 |
T |
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| Q |
212 |
atacattatcgagagaatggttaccagatgacagttatgtaactaatctacaaaa |
266 |
Q |
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|||||||||| ||||||||||||| ||||||||| || ||||||||| |||||| |
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| T |
39511126 |
atacattatcaagagaatggttacgagatgacagatacataactaatccacaaaa |
39511072 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 13 - 141
Target Start/End: Complemental strand, 39580756 - 39580628
Alignment:
| Q |
13 |
tcatcatttgcgtttgttaatgcaattgaactctttatgctccctcttcatttaatccccgattcagtagcacgtttcaattacatcggttctaatggtc |
112 |
Q |
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|||||||||||||||||||||||||| ||||||||||| ||||| |||||| |||||||| ||||| ||| |||||||||||| ||||| ||||| |
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| T |
39580756 |
tcatcatttgcgtttgttaatgcaatggaactctttatactccccactcatttcatccccgaatcagtcacacatttcaattacattaattctactggtc |
39580657 |
T |
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| Q |
113 |
ggggcttaactacttatagtggcggttta |
141 |
Q |
| |
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|||||| || |||| | |||||||||| |
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| T |
39580656 |
aaggcttatcttcttacactggcggttta |
39580628 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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