View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20654_high_29 (Length: 254)
Name: NF20654_high_29
Description: NF20654
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20654_high_29 |
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Alignment Details
Target: chr3 (Bit Score: 215; Significance: 1e-118; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 215; E-Value: 1e-118
Query Start/End: Original strand, 15 - 237
Target Start/End: Complemental strand, 12366789 - 12366567
Alignment:
| Q |
15 |
agatagccacatagaattttttatctatatataacaaatttaacgtcaagtaaagaaaaatttcacataaatacatgatcttatgggaatcagtcttttt |
114 |
Q |
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| T |
12366789 |
agatagccacatagaattttttatctatatataacaaatttaacgtcaagtaaagaaaaatttcacataaatacatgatcttatgggaatcagtcttttt |
12366690 |
T |
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| Q |
115 |
acatgatcttggaagagacaaggctgaggtgagagtgatgggttgagatgttggttctggtgtatccatggatatgtggattcctttcttactcactctt |
214 |
Q |
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|| ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
12366689 |
acgtgatcttggaagagacaaggctgaggtgagagtgatgggttgagaagttggttctggtgtatccatggatatgtggattcctttcttactcactctt |
12366590 |
T |
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| Q |
215 |
tctatcatattcataccatatgc |
237 |
Q |
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| T |
12366589 |
tctatcatattcataccatatgc |
12366567 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 123; E-Value: 3e-63
Query Start/End: Original strand, 95 - 237
Target Start/End: Complemental strand, 12346487 - 12346345
Alignment:
| Q |
95 |
ttatgggaatcagtctttttacatgatcttggaagagacaaggctgaggtgagagtgatgggttgagatgttggttctggtgtatccatggatatgtgga |
194 |
Q |
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||||| |||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||| |
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| T |
12346487 |
ttatgtgaatcagtctttttacatgatcttcgaagagacaaggctgaggtgagagtgatgagttgagatgttggttctggtgtatccatgaatatgtgga |
12346388 |
T |
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| Q |
195 |
ttcctttcttactcactctttctatcatattcataccatatgc |
237 |
Q |
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| T |
12346387 |
ttcctttcttactcactctttctagcatattcataccatatgc |
12346345 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 63; Significance: 2e-27; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 143 - 237
Target Start/End: Original strand, 19965135 - 19965229
Alignment:
| Q |
143 |
gtgagagtgatgggttgagatgttggttctggtgtatccatggatatgtggattcctttcttactcactctttctatcatattcataccatatgc |
237 |
Q |
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||||||||||||||||||||||||| ||||||||||||||||||| ||| ||||||||||||||||||||||||| |||||||| ||||||| |
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| T |
19965135 |
gtgagagtgatgggttgagatgttgagtctggtgtatccatggatacatggtttcctttcttactcactctttctattgtattcatatcatatgc |
19965229 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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