View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20654_high_3 (Length: 631)
Name: NF20654_high_3
Description: NF20654
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20654_high_3 |
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Alignment Details
Target: chr3 (Bit Score: 580; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 580; E-Value: 0
Query Start/End: Original strand, 19 - 618
Target Start/End: Original strand, 41066229 - 41066828
Alignment:
| Q |
19 |
agatcgatcgatgttattacgatctcttcaacaaactcctctgcagaacattttatataatcccatctgcaaggatttttgtgagttggatcccatgatg |
118 |
Q |
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| T |
41066229 |
agatcgatcgatgttattacgatctcttcaacaaactctgctgcagaacattttatataatcccatctgcaaggatttttgtgagttggatcccatgatg |
41066328 |
T |
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| Q |
119 |
agaaagtagtggtagggacagaatttgaggagttgaaagttgaaagccatgaaagtagagagagaccttcttggtttagagaagaaatgaatggaaacaa |
218 |
Q |
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| T |
41066329 |
agaaagtagtggtagggacagaatttgaggagttgaaagttgaaagccatgaaagtagagagagaccttcttggtttagagaagaaatgaatggaaacaa |
41066428 |
T |
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| Q |
219 |
ggagatagtgagaaacaagataagaaaatttaatgcattgtttgacatgatgagttggttttctgctactgttctatctcatctaaaacatagcagcagt |
318 |
Q |
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| T |
41066429 |
ggagatagtgagaaacaagataagaaaatttaatgcattgtttgacatgatgagttggttttctgctactgttctatctcatctaaaacatagcagcagt |
41066528 |
T |
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| Q |
319 |
actattttttctgtgttactactctctatttttctctgtatcatttgatacttgttggatattaaaattctcgtatcttcacttaaagttactgataaag |
418 |
Q |
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|||| ||||||| |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41066529 |
actagtttttctatgttactactctctatttttctctttatcatttgatacttgttggatattaaaattctcgtatcttcacttaaagttactgataaag |
41066628 |
T |
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| Q |
419 |
atgtagacagttcttttatccttcatcatcaaactatatatagttctcttttgtaatggatttacagcaaaggttaaagaaaaggacaaagtggaagcat |
518 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41066629 |
atgtagacagttcttttatccttcatcatcaaactatatatagttctcttttgtaatggatttacagcaaaggttaaagaaaaggacaaagtggaagcat |
41066728 |
T |
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| Q |
519 |
tgtacaagcatgtgtggaacttcagtacgtgcggaagatatataaaagaaatgactcatatagttcgccccttaaagttttaagtaaagatgttgtgttc |
618 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41066729 |
tgtacaagcatgtgtggaacttcagtacgtgcggaagatatataaaagaaatgactcatatagttcgccccttaaagttttaagtaaagatgttgtgttc |
41066828 |
T |
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