View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20654_high_30 (Length: 253)
Name: NF20654_high_30
Description: NF20654
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20654_high_30 |
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Alignment Details
Target: chr1 (Bit Score: 221; Significance: 1e-122; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 221; E-Value: 1e-122
Query Start/End: Original strand, 1 - 233
Target Start/End: Complemental strand, 48818144 - 48817912
Alignment:
| Q |
1 |
tataacccctgcctaccgcccaccccttctccatcgcccaatggtttatcctcttaaacctcaaagataaaatgaagaagcaactattgcttatgtgccg |
100 |
Q |
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| T |
48818144 |
tataacctctgcctaccgcccaccccttgtccatcgcccaatggtttatcctcttaaacctcaaagataaaatgaagaagcaactattgcttatgtgccg |
48818045 |
T |
|
| Q |
101 |
gctaacagtccatgttcaaattgcaatgactcagaaggtgcaacccaaaaattgaaactcggtgataaacagttgccaaaagataaaagtatatgaatgt |
200 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
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| T |
48818044 |
gctaacagtccatgttcaaattgcaatgactcagaaggtgcaacccaaaaattgaaactcggtgataaacagttgccaaaagatagaagtatatgaatgt |
48817945 |
T |
|
| Q |
201 |
aatacaaaacacattatgtgcatatgcaagaac |
233 |
Q |
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||||||||||||||||||||||||||||||||| |
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| T |
48817944 |
aatacaaaacacattatgtgcatatgcaagaac |
48817912 |
T |
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