View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20654_high_39 (Length: 239)
Name: NF20654_high_39
Description: NF20654
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20654_high_39 |
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Alignment Details
Target: chr4 (Bit Score: 214; Significance: 1e-117; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 214; E-Value: 1e-117
Query Start/End: Original strand, 1 - 222
Target Start/End: Complemental strand, 23134816 - 23134595
Alignment:
| Q |
1 |
tactatacatcatcaatttataaagataatcaatcgtggtctccagtgattttcgtagtaaaaagtactcatgaatgcctttcagcatgcacggtttata |
100 |
Q |
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| T |
23134816 |
tactatacatcatcaatttataaagataatcaatcgtggtctccagtgattttcgtagtaaaaagtactcatcaatgcctttcagcatgcacggtttata |
23134717 |
T |
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| Q |
101 |
ttagctgaatgattatgaaagaaaaattaaacagaatgatgtagagactacatttaaaaatactactaatatatgacatgatcaaaccaaagagcgatgc |
200 |
Q |
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| T |
23134716 |
ttagctgaatgattatgaaagaaaaattaaacagaatgatgtagagactacatttaaaaatactactaatatatgacatgatcaaaccaaagagcgatgc |
23134617 |
T |
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| Q |
201 |
aagtgcaactaccccatgtgca |
222 |
Q |
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| T |
23134616 |
aagtgtaactaccccatgtgca |
23134595 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 75 - 194
Target Start/End: Complemental strand, 23155645 - 23155528
Alignment:
| Q |
75 |
atgcctttcagcatgcacggtttatattagctgaatga--ttatgaaagaaaaattaaacagaatgatgtagagactacatttaaaaatactactaatat |
172 |
Q |
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| T |
23155645 |
atgcctttcagcatgcacggttcacatttgcttaatgcgtttataaaagaaaaattaaacagaatgagatagagacttcatttataaa---taataatat |
23155549 |
T |
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| Q |
173 |
atgacatgatcaaaccaaagag |
194 |
Q |
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| T |
23155548 |
atgacct-atcaaaccaaagag |
23155528 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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