View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF20654_low_1 (Length: 706)
Name: NF20654_low_1
Description: NF20654
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20654_low_1 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 649; Significance: 0; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 649; E-Value: 0
Query Start/End: Original strand, 1 - 693
Target Start/End: Original strand, 54656968 - 54657660
Alignment:
| Q |
1 |
attccattacatgctaaatgtattaattattccaaaatttgtagttataagagccacactaactattgatcaactagctagcaaatctctgcatatctac |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |||||||||||||||||||||| |
|
|
| T |
54656968 |
attccattacatgctaaatgtattaattattccaaaatttgtagttataagagccacactaactattgatcaagtaggtagcaaatctctgcatatctac |
54657067 |
T |
|
| Q |
101 |
gagatcaagaaacagttttatatttcagatgattgaaagaaattattatacacatctgataagtttgcttcagcgatgaaaatgcaggaaatgtgcgtcc |
200 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| ||||||||||||||| |
|
|
| T |
54657068 |
gagatcaagaaacagttttatatttcagatgattgaaagaaattattatacacttctgataagtttgcttcagcgatgaaaatgtaggaaatgtgcgtcc |
54657167 |
T |
|
| Q |
201 |
atcaagaagctataattagtttgtgtttggttatgcagtaattaaaattagtttgatagaatcgagttaaaaagaactgattttgaataaaagtgaattg |
300 |
Q |
| |
|
||||||||||| ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |
|
|
| T |
54657168 |
atcaagaagctgtaattagattgtgtttggttatgcagtaattaaaattagtttgatagaatcgagttaaaaagaactgattttgaataaaagtgaatag |
54657267 |
T |
|
| Q |
301 |
aactaaagtaaatttatgtttagatacattcacataaaattggtttttatcgcaggagcaagatcaagaccgatctcttgctgccataattctttggagt |
400 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
54657268 |
aactaaagtaaatttatgtttagatacattcacataaaattggtttttatcacaggagcaagatcaagaccgatctcttgctgccataattctttggagt |
54657367 |
T |
|
| Q |
401 |
ttgtggaagagtagtaataccaagctttgggaggctacaaacacttcactgaccctcattgtctcttgtgcttatgatgtgctacacgaatggagctgca |
500 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
54657368 |
ttgtggaagagtagtaataccaagctttgggaggctacaaacacttcactgaccctcattgtctcttgtgcttatgatgtgctacacgaatggagctgca |
54657467 |
T |
|
| Q |
501 |
tgcaacgagctaagcatccggcaagcccccaagatcagcaacggacgtggaccaagccacagcccggccacatcaaatgcaatgttgacacgaccaattt |
600 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
|
|
| T |
54657468 |
tgcaacgagctaagcatccggcaagcccccaagatcagcaacggacgtggaccaagccacaggccggccacatcaaatgcaatgttgacacgaccaattt |
54657567 |
T |
|
| Q |
601 |
ccataataactctattatggcttatggtttatgctttagagactcaacatgatctctattattaattaaatccgactacttgcacttatcttc |
693 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
|
|
| T |
54657568 |
ccataataactctattatggcttatggtttatgctttagagactcaacatgatctctattattaattaaatctaactacttgcacttatcttc |
54657660 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 186; E-Value: 1e-100
Query Start/End: Original strand, 368 - 697
Target Start/End: Original strand, 43733389 - 43733718
Alignment:
| Q |
368 |
gaccgatctcttgctgccataattctttggagtttgtggaagagtagtaataccaagctttgggaggctacaaacacttcactgaccctcattgtctctt |
467 |
Q |
| |
|
|||||| |||| |||||||| |||||||||||||||||||||||| || ||||||||||||||||||||||||||||||||| | | | | ||||||| |
|
|
| T |
43733389 |
gaccgacctctggctgccatgattctttggagtttgtggaagagtcgttataccaagctttgggaggctacaaacacttcacccatctttaatgtctctc |
43733488 |
T |
|
| Q |
468 |
gtgcttatgatgtgctacacgaatggagctgcatgcaacgagctaagcatccggcaagcccccaagatcagcaacggacgtggaccaagccacagcccgg |
567 |
Q |
| |
|
||||||||||||||| |||||||||||||||||| ||||||||||| ||| ||||||||||||||||| ||| ||||||||||||||| ||||||| |
|
|
| T |
43733489 |
atgcttatgatgtgctccacgaatggagctgcatgtaacgagctaagtatcatgcaagcccccaagatcatcaattgacgtggaccaagccgcagcccga |
43733588 |
T |
|
| Q |
568 |
ccacatcaaatgcaatgttgacacgaccaatttccataataactctattatggcttatggtttatgctttagagactcaacatgatctctattattaatt |
667 |
Q |
| |
|
||| ||||||||||||||||||||| ||||||| ||||||||| ||||| ||||| | ||||||||||||||||||||| ||||||||||||||| | |
|
|
| T |
43733589 |
ccatatcaaatgcaatgttgacacggtcaatttcaataataactttattactgcttacgatttatgctttagagactcaacgtgatctctattattaggt |
43733688 |
T |
|
| Q |
668 |
aaatccgactacttgcacttatcttcatct |
697 |
Q |
| |
|
||||||||||||||| |||||||||||||| |
|
|
| T |
43733689 |
aaatccgactacttgaacttatcttcatct |
43733718 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 167; Significance: 4e-89; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 167; E-Value: 4e-89
Query Start/End: Original strand, 365 - 697
Target Start/End: Complemental strand, 28570860 - 28570534
Alignment:
| Q |
365 |
caagaccgatctcttgctgccataattctttggagtttgtggaagagtagtaataccaagctttgggaggctacaaacacttcactgaccctcattgtct |
464 |
Q |
| |
|
||||||||| |||| ||| |||| |||||||||||| | | ||||||| |||||||||||||||||||||||| |||||||| || ||| ||||||||| |
|
|
| T |
28570860 |
caagaccgacctctggctaccatgattctttggagtctctagaagagtcgtaataccaagctttgggaggctagaaacacttgacccaccttcattgtct |
28570761 |
T |
|
| Q |
465 |
cttgtgcttatgatgtgctacacgaatggagctgcatgcaacgagctaagcatccggcaagcccccaagatcagcaacggacgtggaccaagccacagcc |
564 |
Q |
| |
|
||| |||| ||||||||||||||||||||||||||||||||||||||||| | |||||| ||| ||||||||||| || |||||||||||| || || |
|
|
| T |
28570760 |
cttatgctcatgatgtgctacacgaatggagctgcatgcaacgagctaag---cgggcaag-ccctaagatcagcaatcgatgtggaccaagccgcaacc |
28570665 |
T |
|
| Q |
565 |
cggccacatcaaatgcaatgttgacacgaccaatttccataataactctattatggcttatggtttatgctttagagactcaacatgatctctattatta |
664 |
Q |
| |
|
|| |||||||||||||||||||||| | |||||||| |||||||||||||||||||||| |||||||||||||||||||||||||||||||||| ||| |
|
|
| T |
28570664 |
cgaccacatcaaatgcaatgttgacgcatccaatttcaataataactctattatggcttacagtttatgctttagagactcaacatgatctctatt-tta |
28570566 |
T |
|
| Q |
665 |
attaaatccgactacttgcacttatcttcatct |
697 |
Q |
| |
|
|||| | |||||||||||||||||||||||| |
|
|
| T |
28570565 |
ggtaaa-ctgactacttgcacttatcttcatct |
28570534 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 56; Significance: 8e-23; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 56; E-Value: 8e-23
Query Start/End: Original strand, 594 - 697
Target Start/End: Complemental strand, 29928810 - 29928707
Alignment:
| Q |
594 |
ccaatttccataataactctattatggcttatggtttatgctttagagactcaacatgatctctattattaattaaatccgactacttgcacttatcttc |
693 |
Q |
| |
|
|||||||| ||||||||| |||||||||||| |||||||||||||||||||||||||||||| ||||| ||||| ||||||||||||||||||| |
|
|
| T |
29928810 |
ccaatttcaataataactttattatggcttacaatttatgctttagagactcaacatgatctctgttatttgataaatgtgactacttgcacttatcttt |
29928711 |
T |
|
| Q |
694 |
atct |
697 |
Q |
| |
|
|||| |
|
|
| T |
29928710 |
atct |
29928707 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 380 - 542
Target Start/End: Complemental strand, 29928997 - 29928835
Alignment:
| Q |
380 |
gctgccataattctttggagtttgtggaagagtagtaataccaagctttgggaggctacaaacacttcactgaccctcattgtctcttgtgcttatgatg |
479 |
Q |
| |
|
|||||||| |||||||| ||||| |||||| || |||| || ||||||||| | |||| ||||||||| ||| ||||||||||| |||| |||||| |
|
|
| T |
29928997 |
gctgccatgattctttgaagtttatggaagtgtcgtaacacgaagctttggaaagctagtgacacttcacccaccttcattgtctctcatgctcatgatg |
29928898 |
T |
|
| Q |
480 |
tgctacacgaatggagctgcatgcaacgagctaagcatccggcaagcccccaagatcagcaac |
542 |
Q |
| |
|
|| |||| ||||||| |||||||||| |||||| |||| | |||||||||||||||| |||| |
|
|
| T |
29928897 |
tgttacatgaatggatttgcatgcaacaagctaaacatctgacaagcccccaagatcaacaac |
29928835 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 32; Significance: 0.00000002; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 251 - 302
Target Start/End: Complemental strand, 8041398 - 8041347
Alignment:
| Q |
251 |
gtttgatagaatcgagttaaaaagaactgattttgaataaaagtgaattgaa |
302 |
Q |
| |
|
|||||||||||| ||||| | |||| ||||||||||||||||||||||||| |
|
|
| T |
8041398 |
gtttgatagaattgagtttgagagaattgattttgaataaaagtgaattgaa |
8041347 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 474 - 533
Target Start/End: Complemental strand, 42703227 - 42703168
Alignment:
| Q |
474 |
atgatgtgctacacgaatggagctgcatgcaacgagctaagcatccggcaagcccccaag |
533 |
Q |
| |
|
||||||||||| |||||||||| | ||||||| ||||||| |||||||| ||||||||| |
|
|
| T |
42703227 |
atgatgtgctatacgaatggagtttcatgcaaagagctaaacatccggcgtgcccccaag |
42703168 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 29; Significance: 0.000001; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 605 - 645
Target Start/End: Complemental strand, 34763053 - 34763013
Alignment:
| Q |
605 |
aataactctattatggcttatggtttatgctttagagactc |
645 |
Q |
| |
|
||||||||||| |||| ||||||||||||||||||||||| |
|
|
| T |
34763053 |
aataactctatcatgggctatggtttatgctttagagactc |
34763013 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 605 - 645
Target Start/End: Original strand, 34763794 - 34763834
Alignment:
| Q |
605 |
aataactctattatggcttatggtttatgctttagagactc |
645 |
Q |
| |
|
||||||||||| |||| ||||||||||||||||||||||| |
|
|
| T |
34763794 |
aataactctatcatgggctatggtttatgctttagagactc |
34763834 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University