View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20654_low_10 (Length: 455)
Name: NF20654_low_10
Description: NF20654
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20654_low_10 |
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Alignment Details
Target: chr4 (Bit Score: 381; Significance: 0; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 381; E-Value: 0
Query Start/End: Original strand, 11 - 435
Target Start/End: Original strand, 54979858 - 54980281
Alignment:
| Q |
11 |
taattcttgaaacttgtagtatgataaacatgagacttaccattgctttgagctctgcgccctttaggcttttcactaaatgaaaggatcctctatttat |
110 |
Q |
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| T |
54979858 |
taattcttgaaacttgtagtatgataaacatgagacttaccattgctttgagctctgcgccctttaggcttttcactaaatgaaaggatcctctatttat |
54979957 |
T |
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| Q |
111 |
tgtcaaccttcattaggccaaaatctgaggtgcagctatagtggttgaataaaacattagttatgatgccaatttgataaggctaaatattagacatgtt |
210 |
Q |
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| T |
54979958 |
tgtcaatcttcattaggccaaaatctgaggtgcagctatagtggttgcataaaacattagttatgatgtcaatttgataaggctaaatattagacatgtt |
54980057 |
T |
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| Q |
211 |
ttgaatgccaaatgaggaggccggctcatcagtatgtaaatttgtatattagttattggtggttatgt---tagttatcagggattgaactgcagactta |
307 |
Q |
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| T |
54980058 |
ttgaatgccaaatgagga----ggctcatcagtatgtaaatttgtatattagttattggtggttatgttagtagttatcagggattgaactgcagactta |
54980153 |
T |
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| Q |
308 |
aacttcttatagttctaaaatttgtttttatcagcaaatgttagtaaattagtgattatgttagttaacaaggtttgaactttgaactatcgatctcttc |
407 |
Q |
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| T |
54980154 |
aacttcttataattctaaaatttgtttttatcagcaaatgttagtaaattagtgattatgttagttaacaaggtttgaactttgaactatcgatctcttc |
54980253 |
T |
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| Q |
408 |
gtcaccaaccgagctacatgtttgggac |
435 |
Q |
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| T |
54980254 |
gtcaccaaccgagctacatgtttgggac |
54980281 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 28 - 150
Target Start/End: Original strand, 54971476 - 54971597
Alignment:
| Q |
28 |
agtatgataaacatgagacttaccattgctttgagctctgcgccctttaggcttttcactaaatgaaaggatcctctatttattgtcaaccttcattagg |
127 |
Q |
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||||||||||||||||||||||||||||||||||||||||| || |||||||||||||||||||||||||||||| ||||| |||| ||||||||| |
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| T |
54971476 |
agtatgataaacatgagacttaccattgctttgagctctgctcc-tttaggcttttcactaaatgaaaggatccttcctttatcatcaatcttcattaga |
54971574 |
T |
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| Q |
128 |
ccaaaatctgaggtgcagctata |
150 |
Q |
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||||||||||||| || |||||| |
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| T |
54971575 |
ccaaaatctgaggcgcggctata |
54971597 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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