View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF20654_low_11 (Length: 445)
Name: NF20654_low_11
Description: NF20654
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20654_low_11 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 319; Significance: 1e-180; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 319; E-Value: 1e-180
Query Start/End: Original strand, 1 - 363
Target Start/End: Complemental strand, 10115404 - 10115043
Alignment:
| Q |
1 |
atatttggacaatcactttttaattcatacatgcatcgacatgatatatatttaattttgctcataactaccttcaaagtcatacaaatgatggattatt |
100 |
Q |
| |
|
||||||| |||||||||||| |||||||||| ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
10115404 |
atatttgtacaatcactttt-aattcatacaatcatcgacataatatatatttaattttgctcataactaccttcaaagtcatacaaatgatggattatt |
10115306 |
T |
|
| Q |
101 |
attcatcgaaggtatacaatatttttcactaactgttcatcaaaattattcttacgaaaatatcttttatatttccagttcaaaacagatatatctatca |
200 |
Q |
| |
|
|||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
10115305 |
attcattgaaggtatacaatatttttcactaactgtgcatcaaaattattcttacgaaaatatcttttatatttccagttcaaaacagatatatctatca |
10115206 |
T |
|
| Q |
201 |
tcatttcatatatatacgttttagtgtcgcccttgtcgtggaccttagagccatgacaaattattctctccggtactcaacggttctagtaggagatagt |
300 |
Q |
| |
|
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
|
|
| T |
10115205 |
tcatttcatatatatacgttttagtgttgcccttgtcgtggaccttagagccatgacaaattattctctccagtactcaacggttctagtaggagatagt |
10115106 |
T |
|
| Q |
301 |
tacttttaattattcaaaaagtattctcatttcacgtcttcatgtctatatatctctcctgtt |
363 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
|
|
| T |
10115105 |
tacttttaattattcaaaaagtattctcatttcaggtcttcatgtctatatatctctcctgtt |
10115043 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University