View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF20654_low_16 (Length: 375)
Name: NF20654_low_16
Description: NF20654
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20654_low_16 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 328; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 328; E-Value: 0
Query Start/End: Original strand, 11 - 362
Target Start/End: Complemental strand, 15528790 - 15528439
Alignment:
| Q |
11 |
taatactaatgattaaaagtaatttacaattactgtacttttaaatctataaaagtgaatgattaaaagaaaaaataggaaccactctataggtagttga |
110 |
Q |
| |
|
||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
15528790 |
taatactaatgattaaaagtaatttacaaatactgtacttttaaatctatgaaagtgaatgattaaaagaaaaaataggaaccactctataggtagttga |
15528691 |
T |
|
| Q |
111 |
cttgacttcgacaattcacttagagaagacttaagaaattggccagaaagagtgtattgggacttctatttgagtccatacgtgatttttaactgaggca |
210 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
15528690 |
cttgacttcgacaattcacttagagaagacttaagaaattggccagaaagagtgtattggaacttctatttgagtccatacgtgatttttaactgaggca |
15528591 |
T |
|
| Q |
211 |
tgactttacactaattgtccatttcatggaacccaaagtttacattgcagagtccatcacaagttaaccaattacataattcaaatcattgcaagaaagc |
310 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
15528590 |
tgactttacactaattgtccatttcatggaacccaaagtttacattgtagagtccatcacaagttaaccaattacataattcaaatcattgcaagaaagc |
15528491 |
T |
|
| Q |
311 |
ttttagtctattaagaatggacactctttagattacgtgtgtcttggtgtca |
362 |
Q |
| |
|
||||||||||||||||||| |||||||||||||||||| ||||||||||||| |
|
|
| T |
15528490 |
ttttagtctattaagaatgaacactctttagattacgtctgtcttggtgtca |
15528439 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 39; Significance: 0.0000000000006; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 103 - 169
Target Start/End: Complemental strand, 22769717 - 22769652
Alignment:
| Q |
103 |
gtagttgacttgacttcgacaattcacttagagaagacttaagaaattggccagaaagagtgtattg |
169 |
Q |
| |
|
|||||||||||||||| || |||||||||| | ||||||| |||||||||||| ||||||||||||| |
|
|
| T |
22769717 |
gtagttgacttgacttggaaaattcacttaaa-aagacttgagaaattggccacaaagagtgtattg |
22769652 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 211 - 272
Target Start/End: Complemental strand, 22769628 - 22769567
Alignment:
| Q |
211 |
tgactttacactaattgtccatttcatggaacccaaagtttacattgcagagtccatcacaa |
272 |
Q |
| |
|
||||||||||||||| |||||||||||||| || |||||||||| |||||||||| ||||| |
|
|
| T |
22769628 |
tgactttacactaatagtccatttcatggagccacaagtttacatcgcagagtccaccacaa |
22769567 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University