View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20654_low_18 (Length: 348)
Name: NF20654_low_18
Description: NF20654
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20654_low_18 |
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Alignment Details
Target: chr6 (Bit Score: 218; Significance: 1e-120; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 218; E-Value: 1e-120
Query Start/End: Original strand, 109 - 338
Target Start/End: Complemental strand, 4809496 - 4809267
Alignment:
| Q |
109 |
tccataaagttttaatgtcaacaattattgttttgaagataaagtattatttatggatttattaacatgtctcttttagcacaagttacagtcacctttt |
208 |
Q |
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| T |
4809496 |
tccataaagttttaatgtcaacaattattgttttgaagataatgtattatttatggatttattaacatgtctcttttggcacaagttacagtcacctttt |
4809397 |
T |
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| Q |
209 |
acgtaattgtaaattcagtcatgtttccaatcatgccttcattttccctcttgaagttgaaatacaaacgaacatatctttccaccaaacatctcttgga |
308 |
Q |
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| T |
4809396 |
acgtaattgtaaattcagtcatgtttccaatcatgccttcattttccctcatgaagttgaaatacaaacgaacatatctttccaccaaacatctcttgga |
4809297 |
T |
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| Q |
309 |
catttccttttatcagtagacacccctttg |
338 |
Q |
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| T |
4809296 |
catttccttttatcagtagacacccctttg |
4809267 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 74; E-Value: 7e-34
Query Start/End: Original strand, 21 - 110
Target Start/End: Complemental strand, 4831811 - 4831722
Alignment:
| Q |
21 |
tacatgaaaaaagaaaagtctgcactaactttgtttatattcacatatgtctagtgtctaatctccaatcttattgatacaatattactc |
110 |
Q |
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|||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||| ||||||||| ||||||||||||||| |
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| T |
4831811 |
tacatgaaaaaagaaaggcctgcactaactttgtttatattcacatatgtctagtgtctaatcttcaatcttatcgatacaatattactc |
4831722 |
T |
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