View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20654_low_19 (Length: 345)
Name: NF20654_low_19
Description: NF20654
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20654_low_19 |
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Alignment Details
Target: chr2 (Bit Score: 330; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 330; E-Value: 0
Query Start/End: Original strand, 1 - 330
Target Start/End: Original strand, 38939706 - 38940035
Alignment:
| Q |
1 |
ataatactacaaggccaactccgattcaatcaaaaatactcgcgaatgttgaagcttgtactggctggtgccagctcatattctctaacaaactcgatga |
100 |
Q |
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| T |
38939706 |
ataatactacaaggccaactccgattcaatcaaaaatactcgcgaatgttgaagcttgtactggctggtgccagctcatattctctaacaaactcgatga |
38939805 |
T |
|
| Q |
101 |
agtagttacaccagtgggatatataaagttctctgttcccacttcttcaacattcatcgagaattccttcaatcaccgttgcttcatctcatccaaaaac |
200 |
Q |
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| T |
38939806 |
agtagttacaccagtgggatatataaagttctctgttcccacttcttcaacattcatcgagaattccttcaatcaccgttgcttcatctcatccaaaaac |
38939905 |
T |
|
| Q |
201 |
ggttacagctttcagcgattttcaggtaacattcgttatcgctattttccttttcgttttccgtgaatccttgttgatgatgatgaatctctacggtaac |
300 |
Q |
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| T |
38939906 |
ggttacagctttcagcgattttcaggtaacattcgttatcgctattttccttttcgttttccgtgaatccttgttgatgatgatgaatctctacggtaac |
38940005 |
T |
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| Q |
301 |
attcatcatcattacttcgttttcttttgt |
330 |
Q |
| |
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| T |
38940006 |
attcatcatcattacttcgttttcttttgt |
38940035 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 82; Significance: 1e-38; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 103 - 323
Target Start/End: Complemental strand, 55759865 - 55759652
Alignment:
| Q |
103 |
tagttacaccagtgggatatataaagttctctgttcccacttcttcaacattcatcgagaattccttcaatcaccgttgcttcatctcatccaa-aaacg |
201 |
Q |
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| T |
55759865 |
tagttacaccagtgggatatataaagttctcagttccctcttcttcaacattcatcgtgaaa-ccttcaagca---ttgctttctctcatccaagaaacg |
55759770 |
T |
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| Q |
202 |
gttacagc--tttcagcgattttcaggtaacattcgttatcgctattttccttttcgttttccgtgaatccttgttgatgatgatgaatctctacggtaa |
299 |
Q |
| |
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||| ||| ||||| ||||| |||||||||| |||||||||||| | ||||||||||| ||| ||||| ||||||||||||||||| |||||||| |
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| T |
55759769 |
gtttcagtgttttca----ttttctggtaacattcattatcgctatttgc-ttttcgttttca-tgactccttattgatgatgatgaatctttacggtaa |
55759676 |
T |
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| Q |
300 |
cattcatcatcattacttcgtttt |
323 |
Q |
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| T |
55759675 |
cattcatcatcattatttcgtttt |
55759652 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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