View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20654_low_2 (Length: 642)
Name: NF20654_low_2
Description: NF20654
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20654_low_2 |
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Alignment Details
Target: chr7 (Bit Score: 430; Significance: 0; HSPs: 4)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 430; E-Value: 0
Query Start/End: Original strand, 125 - 631
Target Start/End: Original strand, 515023 - 515533
Alignment:
| Q |
125 |
atttatgaggacaaaaaacctaataagtttataggtgttt-tggaaaatttcaagtgcatgagttgttttcaacagctgagagacacattcagttataac |
223 |
Q |
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|||||||||||||||||||||||||||||||||||||||| ||||||| |||||||||||||||||||||||||| |||||||||||||||||||||||| |
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| T |
515023 |
atttatgaggacaaaaaacctaataagtttataggtgtttatggaaaagttcaagtgcatgagttgttttcaacaactgagagacacattcagttataac |
515122 |
T |
|
| Q |
224 |
attcaaaatcatttgaaattctcatcaagtttaaccaaactagctttatgttgacnnnnnnnnn---gtcttagtttcaatgacacttacagcacaattt |
320 |
Q |
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| T |
515123 |
attcaaaatcatttgaaattgtcatcaagtttaaccaaactagctttatgttgacttttttttttttgtcttagtttcaatgacacttacagcacaattt |
515222 |
T |
|
| Q |
321 |
tcactttatgctcagttgtgaaggcatatcaatacacctcacttacaagtgtgatgctacttgactgctggtctattccatgtgtcatgctgcttacatg |
420 |
Q |
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|||| |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
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| T |
515223 |
tcaccttatgcacagttgtgaaggcatatcaatacacctcacttacaagtgtgatgctacttgactgctggtctattccatgcgtcatgctgcttacatg |
515322 |
T |
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| Q |
421 |
gattttcttgaaaacaaaatatagattcaagaagataactggtgtaattgtttgcatagccggccttgtcctagttgtattttcggatgttcatgctggt |
520 |
Q |
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| T |
515323 |
gattttcttgaaaacaaaatatagattcaagaagataactggtgtaattgtttgcatagctggccttgtcctagttgtattttcggatgttcatgctggt |
515422 |
T |
|
| Q |
521 |
gaccgtgcaggtaggtggctttatatcttatgactatacctaaaaacttatgcacacacgtctgatcagtagcatgcatcattccatttatcatgtttgt |
620 |
Q |
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| T |
515423 |
gaccgtgccggtaggtggctttatatcttatgactatacctaaaaacttatgcacacacgtctgatcagtagcatgcatcattccatttatcatgtttgt |
515522 |
T |
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| Q |
621 |
ctgatgatgtc |
631 |
Q |
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||||||||||| |
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| T |
515523 |
ctgatgatgtc |
515533 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 247; E-Value: 1e-137
Query Start/End: Original strand, 173 - 578
Target Start/End: Original strand, 530265 - 530667
Alignment:
| Q |
173 |
ttcaagtgcatgagttgttttcaacagctgagagacacattcagttataacattcaaaatcatttgaaattctcatcaagtttaaccaaactagctttat |
272 |
Q |
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| T |
530265 |
ttcaagtgcataagttgttttctactactgagagacactattagttataacactcaaaatcatttgaaattgtcaaaaagtttaacaaaactagctttat |
530364 |
T |
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| Q |
273 |
gttgacnnnnnnnnngtcttagtttcaatgacacttacagcacaattttcactttatgctcagttgtgaaggcatatcaatacacctcacttacaagtgt |
372 |
Q |
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| T |
530365 |
gttgactttttctc-gtcttagtttcaatgac--taacagaacaattttcaccttatgtacagttgtgaaggcatatcaatacacctcacttactagtgt |
530461 |
T |
|
| Q |
373 |
gatgctacttgactgctggtctattccatgtgtcatgctgcttacatggattttcttgaaaacaaaatatagattcaagaagataactggtgtaattgtt |
472 |
Q |
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| T |
530462 |
gatgctacctgactgctggtccattccatgcgtcatgcttcttacatggattttcttgaaaacaaaatatagattcaagaagataactggggtaattgtt |
530561 |
T |
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| Q |
473 |
tgcatagccggccttgtcctagttgtattttcggatgttcatgctggtgaccgtgcaggtaggtggctttatatcttatgactatacctaaaaacttatg |
572 |
Q |
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| T |
530562 |
tgcatagctggccttgttctggttgtattttcggatgttcatgccggtgaccgtgcaggtaggtggctttatgtcttgtgactatacctaaaaacttatg |
530661 |
T |
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| Q |
573 |
cacaca |
578 |
Q |
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| T |
530662 |
cacaca |
530667 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 67; E-Value: 2e-29
Query Start/End: Original strand, 19 - 85
Target Start/End: Original strand, 514858 - 514924
Alignment:
| Q |
19 |
attatatacttcttggattggttgatgtggaagcaaattttcttggtaagtaactatctttcatggt |
85 |
Q |
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| T |
514858 |
attatatacttcttggattggttgatgtggaagcaaattttcttggtaagtaactatctttcatggt |
514924 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 19 - 70
Target Start/End: Original strand, 530004 - 530055
Alignment:
| Q |
19 |
attatatacttcttggattggttgatgtggaagcaaattttcttggtaagta |
70 |
Q |
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| T |
530004 |
attatatacttcttggattggttgatgtggaagcaaattttcttggtaagta |
530055 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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