View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20654_low_20 (Length: 345)
Name: NF20654_low_20
Description: NF20654
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20654_low_20 |
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Alignment Details
Target: chr5 (Bit Score: 252; Significance: 1e-140; HSPs: 5)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 252; E-Value: 1e-140
Query Start/End: Original strand, 70 - 329
Target Start/End: Original strand, 18814160 - 18814419
Alignment:
| Q |
70 |
caaaggtcttgcatgcttttgagatggcaatttggcattaaatcacacgtttcaatgaagctgcgtcttaactttgcatcaaatactcaatcttgctttt |
169 |
Q |
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| T |
18814160 |
caaaggtcttgcatgcttttgagatggcaatttggcattaaatcacacgtttcaatgaagctgcgtcttaactttgcatcaaatactcaatcttgctttt |
18814259 |
T |
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| Q |
170 |
tggttagacttcatgggcatggttgggaattgagtaacttgcaaccacaagtaatttggacaggctgtgcgagataacctaactgcttgaaacatgttaa |
269 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
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| T |
18814260 |
tggttagacttcatgggcatggttgggaattgagtaacttgcaaccacaagtaatttggacaggctgtgcgaggtaacctaactgcttgaaacatgttaa |
18814359 |
T |
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| Q |
270 |
tatatgaaaaacagttctaaatcacagtatttaatctagctaggtaaatttcaaaataca |
329 |
Q |
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||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
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| T |
18814360 |
tatatgaaaaacagttctaaatcacagtaattaatctagctaggtaaatttcaaaataca |
18814419 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 125; E-Value: 2e-64
Query Start/End: Original strand, 70 - 329
Target Start/End: Complemental strand, 18813782 - 18813522
Alignment:
| Q |
70 |
caaaggtcttgcatgcttttgagatggcaatttggcattaaatcacacgtttcaatgaagctgcgtcttaactttgcatcaaatactcaatcttgctttt |
169 |
Q |
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||||||| |||||||| ||| || ||||| |||| | |||||||||| ||||| ||| |||||||||| ||||||||||| |||||||||| ||||| |
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| T |
18813782 |
caaaggttttgcatgcatttaaggtggcattttgacgttaaatcacatgtttcgtcgaatttgcgtcttaagtttgcatcaaaaactcaatcttactttt |
18813683 |
T |
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| Q |
170 |
tggttagactt-catgggcatggttgggaattgagtaacttgcaaccacaagtaatttggacaggctgtgcgagataacctaactgcttgaaacatgtta |
268 |
Q |
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| T |
18813682 |
tggttagactttcatgggcatggttgggaaataagtaatttgcaaccacaagtaatttggacgggctgtgcgagggaacctaactgcttgaaacatgtta |
18813583 |
T |
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| Q |
269 |
atatatgaaaaacagttctaaatcacagtatttaatctagctaggtaaatttcaaaataca |
329 |
Q |
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|||||||||| ||||||| || ||| || |||| ||||||| |||||||||||||||| |
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| T |
18813582 |
ttatatgaaaatgagttctagattacaataactaatttagctagataaatttcaaaataca |
18813522 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 88; E-Value: 3e-42
Query Start/End: Original strand, 179 - 329
Target Start/End: Complemental strand, 18791738 - 18791590
Alignment:
| Q |
179 |
ttcatgggcatggttgggaattgagtaacttgcaaccacaagtaatttggacaggctgtgcgagataacctaactgcttgaaacatgttaatatatgaaa |
278 |
Q |
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|||||||| ||||| ||||||||||| | ||||||||||| |||||||||||||| |||||||| ||||||||||||||||||||||||| |||||| | |
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| T |
18791738 |
ttcatgggtatggtagggaattgagtgagttgcaaccacaggtaatttggacaggttgtgcgaggtaacctaactgcttgaaacatgttattatatg--a |
18791641 |
T |
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| Q |
279 |
aacagttctaaatcacagtatttaatctagctaggtaaatttcaaaataca |
329 |
Q |
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| T |
18791640 |
aagagttctagattacaataattaatctagctaggtaaatttcaaaataca |
18791590 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 71; E-Value: 4e-32
Query Start/End: Original strand, 179 - 329
Target Start/End: Original strand, 18791745 - 18791894
Alignment:
| Q |
179 |
ttcatgggcatggttgggaattgagtaacttgcaaccacaagtaatttggacaggctgtgcgagataacctaactgcttgaaacatgttaatatatgaaa |
278 |
Q |
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||||||| | |||||||||||||||| | ||||||| |||| ||||||||||||||| | | ||||||||||||| ||| |||||| ||||||||| |
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| T |
18791745 |
ttcatggacttggttgggaattgagtgatttgcaacgacaaataatttggacaggctttctaggggaacctaactgcttaaaa-atgttattatatgaaa |
18791843 |
T |
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| Q |
279 |
aacagttctaaatcacagtatttaatctagctaggtaaatttcaaaataca |
329 |
Q |
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||||||||||||||||| || |||||||||||||||||||||| ||||||| |
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| T |
18791844 |
aacagttctaaatcacaataattaatctagctaggtaaatttccaaataca |
18791894 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 14 - 47
Target Start/End: Original strand, 18814103 - 18814136
Alignment:
| Q |
14 |
gaaggagaactaagtaataataccaatgatttgg |
47 |
Q |
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| T |
18814103 |
gaaggagaactaagtaataataccaatgatttgg |
18814136 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 92; Significance: 1e-44; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 92; E-Value: 1e-44
Query Start/End: Original strand, 70 - 327
Target Start/End: Complemental strand, 11328105 - 11327847
Alignment:
| Q |
70 |
caaaggtcttgcatgcttttgagatggcaatttggcattaaatcacacgtttcaatgaagctgcgtcttaactttgcatcaaatactcaatcttgct-tt |
168 |
Q |
| |
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||||||| |||||||| |||||| ||||| |||| ||||| |||| ||||||| |||| ||| ||||||||||||||||||||| || |||| || || |
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| T |
11328105 |
caaaggttttgcatgcatttgaggtggcattttgatgttaaa-cacatgtttcaacgaagttgcatcttaactttgcatcaaatacccactcttactgtt |
11328007 |
T |
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| Q |
169 |
ttggttagactt-catgggcatggttgggaattgagtaacttgcaaccacaagtaatttggacaggctgtgcgagataacctaactgcttgaaacatgtt |
267 |
Q |
| |
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|| ||||| || ||||||||||| |||||| ||| | | |||||||||||||||||||||| |||||| || ||||||||||||||||||||||| |
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| T |
11328006 |
tttcttagattttcatgggcatggcagggaatgaagtttcatacaaccacaagtaatttggacagactgtgcaagggaacctaactgcttgaaacatgtt |
11327907 |
T |
|
| Q |
268 |
aatatatgaaaaacagttctaaatcacagtatttaatctagctaggtaaatttcaaaata |
327 |
Q |
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| ||||||||||| ||||||| || ||| || |||||||| ||||||||||||||||||| |
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| T |
11327906 |
attatatgaaaaagagttctagattacaataattaatctatctaggtaaatttcaaaata |
11327847 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 225 - 307
Target Start/End: Original strand, 11328836 - 11328917
Alignment:
| Q |
225 |
ttggacaggctgtgcgagataacctaactgcttgaaacatgttaatatatgaaaaacagttctaaatcacagtatttaatcta |
307 |
Q |
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| T |
11328836 |
ttggacaggctgtgcgagggaacctaactgcttgaaatatgttattatacgaaaaacagttct-aatcacagtaattaatcta |
11328917 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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