View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20654_low_21 (Length: 342)
Name: NF20654_low_21
Description: NF20654
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20654_low_21 |
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Alignment Details
Target: chr3 (Bit Score: 283; Significance: 1e-158; HSPs: 7)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 283; E-Value: 1e-158
Query Start/End: Original strand, 20 - 332
Target Start/End: Original strand, 36704364 - 36704675
Alignment:
| Q |
20 |
atcataaacgacttgtttagcattgtcacccgctataaaatcagcatgtgcataatcatccttgaacaataccacgcgcttgttagcatcttgatcactg |
119 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36704364 |
atcataaacgacttgtttagcattgtcacccgctataaaatcagcatgtgcataatcatccttgaacaataccacgcgcttgttagcatcttgatcactg |
36704463 |
T |
|
| Q |
120 |
agatcattgagcaaaaccttcacatcttgtacatcagatnnnnnnntccttccctccatagccaagaaaaagtgggaattcacttgagatttttgtcatg |
219 |
Q |
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||||||||||||||||||||||||||||||||||||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36704464 |
agatcattgagcaaaaccttcacatcttgtacatcagataaaaaa-tcattccctccatagccaagaaaaagtgggaattcacttgagatttttgtcatg |
36704562 |
T |
|
| Q |
220 |
tcatatgttggaggaaccctttgtccatagtgttgtatattttgtgctgcattaacataatcatactttgctatttttcctgttctgatcactactcaaa |
319 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36704563 |
tcatatgttggaggaaccctttgtccatagtgttgtatattttgtgctgcattaacataatcatactttgctatttttcctgttctgatcactactcaaa |
36704662 |
T |
|
| Q |
320 |
tttcatagtataa |
332 |
Q |
| |
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||||||||||||| |
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| T |
36704663 |
tttcatagtataa |
36704675 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 154; E-Value: 1e-81
Query Start/End: Original strand, 20 - 326
Target Start/End: Original strand, 36711511 - 36711819
Alignment:
| Q |
20 |
atcataaacgacttgtttagcattgtcacccgctataaaatcagcatgtgcataatcatccttgaacaataccacgcgcttgttagcatcttgatcact- |
118 |
Q |
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|||||||||||||||||||||||| |||||| |||||||||| |||||||||||||||||| ||||||||||| || ||| ||||||| || ||| | |
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| T |
36711511 |
atcataaacgacttgtttagcattatcacccaatataaaatcaagatgtgcataatcatccttaaacaataccacacggttgctagcatcatggtcatta |
36711610 |
T |
|
| Q |
119 |
--gagatcattgagcaaaaccttcacatcttgtacatcagatnnnnnnntccttccctccatagccaagaaaaagtgggaattcacttgagatttttgtc |
216 |
Q |
| |
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||| ||||||| |||||||||||||||||||||||||||| || ||||||||||||| |||||||| ||||||||||| | |||||| ||| |
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| T |
36711611 |
ttgagttcattgaacaaaaccttcacatcttgtacatcagatagagta-tctttccctccatagctgagaaaaagggggaattcactagggattttggtc |
36711709 |
T |
|
| Q |
217 |
atgtcatatgttggaggaaccctttgtccatagtgttgtatattttgtgctgcattaacataatcatactttgctatttttcctgttctgatcactactc |
316 |
Q |
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| |||||| ||||||||||||||||||||||||||||||| |||||||||| ||| ||||||||||||||||| ||||| |||| ||||||||||||||| |
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| T |
36711710 |
acgtcataagttggaggaaccctttgtccatagtgttgtaaattttgtgcttcatcaacataatcatactttgatatttgtccttttctgatcactactc |
36711809 |
T |
|
| Q |
317 |
aaatttcata |
326 |
Q |
| |
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|||||||||| |
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| T |
36711810 |
aaatttcata |
36711819 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 20 - 322
Target Start/End: Complemental strand, 36664926 - 36664625
Alignment:
| Q |
20 |
atcataaacgacttgtttagcattgtcacccgctataaaatcagcatgtgcataatcatccttgaacaataccacgcgcttgttagcatcttgatcactg |
119 |
Q |
| |
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|||||||| || ||||||||||||| | |||| || ||||| ||||||||||| ||| || ||| | ||||| ||||||||| ||| ||||| || |
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| T |
36664926 |
atcataaatgagttgtttagcattgatagccgcaatgaaatctaaatgtgcataattatcgttcaacgacaccactagcttgttagaatcatgatccttg |
36664827 |
T |
|
| Q |
120 |
agatcattgagcaaaaccttcacatcttgtacatcagatnnnnnnntccttccctccatagccaagaaaaagtgggaattcacttgagatttttgtcatg |
219 |
Q |
| |
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|| ||||| ||||||| |||||||| ||||| |||||| || | ||||||| || |||||||| ||||| || | | |||||| |||| | |
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| T |
36664826 |
aggtcattaagcaaaagattcacatcctgtacgtcagataacata-tcttgccctccaacacctagaaaaagagggaactcggtagggattttggtcaag |
36664728 |
T |
|
| Q |
220 |
tcatatgttggaggaaccctttgtccatagtgttgtatattttgtgctgcattaacataatcatactttgctatttttcctgttctgatcactactcaaa |
319 |
Q |
| |
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||||| ||||||||| | |||||||||||| ||| |||||||||| || ||||||||||||||||| |||||||||||||| |||||| ||||| |
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| T |
36664727 |
tcataagttggaggagttcgatgtccatagtgtagtagattttgtgcttgatgaacataatcatactttgtgatttttcctgttctcgtcactattcaaa |
36664628 |
T |
|
| Q |
320 |
ttt |
322 |
Q |
| |
|
||| |
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|
| T |
36664627 |
ttt |
36664625 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 20 - 94
Target Start/End: Original strand, 36677319 - 36677393
Alignment:
| Q |
20 |
atcataaacgacttgtttagcattgtcacccgctataaaatcagcatgtgcataatcatccttgaacaataccac |
94 |
Q |
| |
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||||||||||||||||||||||||| || |||| || ||||| |||||||||||| |||||| ||||| ||||| |
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| T |
36677319 |
atcataaacgacttgtttagcattgacagccgcaatgaaatctacatgtgcataattatccttcaacaacaccac |
36677393 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 20 - 94
Target Start/End: Original strand, 36687401 - 36687475
Alignment:
| Q |
20 |
atcataaacgacttgtttagcattgtcacccgctataaaatcagcatgtgcataatcatccttgaacaataccac |
94 |
Q |
| |
|
||||||||||||||||||||||||| || |||| || ||||| |||||||||||| |||||| ||||| ||||| |
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| T |
36687401 |
atcataaacgacttgtttagcattgacagccgcaatgaaatctacatgtgcataattatccttcaacaacaccac |
36687475 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 241 - 290
Target Start/End: Original strand, 36677440 - 36677489
Alignment:
| Q |
241 |
tgtccatagtgttgtatattttgtgctgcattaacataatcatactttgc |
290 |
Q |
| |
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|||||||||||| ||| |||||||||| || |||||||||||||||||| |
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| T |
36677440 |
tgtccatagtgtagtagattttgtgcttgatgaacataatcatactttgc |
36677489 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 241 - 290
Target Start/End: Original strand, 36687522 - 36687571
Alignment:
| Q |
241 |
tgtccatagtgttgtatattttgtgctgcattaacataatcatactttgc |
290 |
Q |
| |
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|||||||||||| ||| |||||||||| || |||||||||||||||||| |
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| T |
36687522 |
tgtccatagtgtagtagattttgtgcttgatgaacataatcatactttgc |
36687571 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 112; Significance: 1e-56; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 112; E-Value: 1e-56
Query Start/End: Original strand, 56 - 317
Target Start/End: Complemental strand, 30905765 - 30905505
Alignment:
| Q |
56 |
aaaatcagcatgtgcataatcatccttgaacaataccacgcgcttgttagcatcttgatcactgagatcattgagcaaaaccttcacatcttgtacatca |
155 |
Q |
| |
|
||||||||||||||||||||| | |||||| | ||||| ||||||||||||| ||||| ||| ||||||||||||||||||||||||||||||||| |
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| T |
30905765 |
aaaatcagcatgtgcataatcttgattgaacgctgccacgagcttgttagcatcatgatcttggaggtcattgagcaaaaccttcacatcttgtacatca |
30905666 |
T |
|
| Q |
156 |
gatnnnnnnntccttccctccatagccaagaaaaagtgggaattcacttgagatttttgtcatgtcatatgttggaggaaccctttgtccatagtgttgt |
255 |
Q |
| |
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||| || | ||||||||| || |||||||||||||| ||| | | |||||| |||| ||| || ||||||||||| | ||| |||||||||||| |
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| T |
30905665 |
gatagcata-tcttgccctccatatccgagaaaaagtgggaaatcattcgggattttggtcaggtcgtaagttggaggaactcgttgaccatagtgttgt |
30905567 |
T |
|
| Q |
256 |
atattttgtgctgcattaacataatcatactttgctatttttcctgttctgatcactactca |
317 |
Q |
| |
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| |||||||||| || ||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
30905566 |
acattttgtgcttgatcaacataatcatactttgctatttttcctgttctgatcactactca |
30905505 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 32; Significance: 0.000000008; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 275 - 314
Target Start/End: Complemental strand, 11300745 - 11300706
Alignment:
| Q |
275 |
cataatcatactttgctatttttcctgttctgatcactac |
314 |
Q |
| |
|
|||||||||||||||||||| ||||| ||||||||||||| |
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|
| T |
11300745 |
cataatcatactttgctattgttccttttctgatcactac |
11300706 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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