View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20654_low_24 (Length: 287)

Name: NF20654_low_24
Description: NF20654
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20654_low_24
NF20654_low_24
[»] chr7 (1 HSPs)
chr7 (3-287)||(45370918-45371201)


Alignment Details
Target: chr7 (Bit Score: 205; Significance: 1e-112; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 205; E-Value: 1e-112
Query Start/End: Original strand, 3 - 287
Target Start/End: Complemental strand, 45371201 - 45370918
Alignment:
Q  3 catgtcgaagaatatagtcgcaaaagggaattgtgtcagaagaataaccatatctcacctttaccaacaaacacactattttcccttacaaccaaaaaga 102  Q
    |||||| || || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||    
T  45371201 catgtccaacaacatagtcgcaaaagggaattgtgtcagaagaataaccatatctcacctttaccaacaaacacactattttcccttagaaccaaaaaga 45371102  T
Q  103 gacacaatattttcannnnnnnnctctttaccaaagccaaaggtagctagaaaaagcagggcatgaaataattcaacttcctannnnnnnnctctctgat 202  Q
    ||||||| |||||||        ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||         | ||||||    
T  45371101 gacacaacattttcattttttttctctttaccaaagccaaaggtagctagaaaaagcagggcatgaaataattcaacttcctatttttttt-tttctgat 45371003  T
Q  203 aaatcactcaattatttgtcactgcacacaacgttacaagaaacaatcatctctcggtatatctttctgcagatgagcaaatcac 287  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  45371002 aaatcactcaattatttgtcactgcacacaacgttacaagaaacaatcatctctcggtatatctttctgcagatgagcaaatcac 45370918  T

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