View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20654_low_28 (Length: 256)
Name: NF20654_low_28
Description: NF20654
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20654_low_28 |
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Alignment Details
Target: chr4 (Bit Score: 216; Significance: 1e-119; HSPs: 6)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 216; E-Value: 1e-119
Query Start/End: Original strand, 19 - 242
Target Start/End: Original strand, 39520529 - 39520752
Alignment:
| Q |
19 |
aggactcccttataaacaattccaaaaccaccctttccaataatcctcttcgcatcaaaattatccgttgcaaattgaagatcaagcaaagggattttca |
118 |
Q |
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| T |
39520529 |
aggactcccttataaacaattccaaaaccaccctttccaataatcctctttgcatcgaaattatccgttgcaaattgaagatcaagcaaagggattttca |
39520628 |
T |
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| Q |
119 |
atccaaggtttatgttaggtaaaggtgagccttgaattgttgttgcatcagttaatctgctgtgagaactccctcctctggcagctggaatgggcaacca |
218 |
Q |
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| T |
39520629 |
atccaaggtttatgttaggtaaaggtgagccttgaattgttgttgcatcagttaatctgctgtgagaactccctcctctggcagctggaatgggcaacca |
39520728 |
T |
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| Q |
219 |
ttcggaattctcaacaggcctttg |
242 |
Q |
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|||||||||||||||||||||||| |
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| T |
39520729 |
ttcggaattctcaacaggcctttg |
39520752 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 181; E-Value: 7e-98
Query Start/End: Original strand, 22 - 242
Target Start/End: Original strand, 39510274 - 39510494
Alignment:
| Q |
22 |
actcccttataaacaattccaaaaccaccctttccaataatcctcttcgcatcaaaattatccgttgcaaattgaagatcaagcaaagggattttcaatc |
121 |
Q |
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|||||||||||||||||||||||||||||||||||||| |||||||| |||||||| ||||||||||| ||||||||||||||||| ||||||||||||| |
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| T |
39510274 |
actcccttataaacaattccaaaaccaccctttccaattatcctctttgcatcaaagttatccgttgcgaattgaagatcaagcaaggggattttcaatc |
39510373 |
T |
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| Q |
122 |
caaggtttatgttaggtaaaggtgagccttgaattgttgttgcatcagttaatctgctgtgagaactccctcctctggcagctggaatgggcaaccattc |
221 |
Q |
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| T |
39510374 |
cgaggtttatgttaggtaaaggggagccttgaattgctgttgcatcagttaatctgctgtgagaactccctcctctggcagctggaattggcaaccattc |
39510473 |
T |
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| Q |
222 |
ggaattctcaacaggcctttg |
242 |
Q |
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|||||| |||||||||||||| |
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| T |
39510474 |
ggaattttcaacaggcctttg |
39510494 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 130; E-Value: 2e-67
Query Start/End: Original strand, 97 - 242
Target Start/End: Original strand, 39524092 - 39524237
Alignment:
| Q |
97 |
agatcaagcaaagggattttcaatccaaggtttatgttaggtaaaggtgagccttgaattgttgttgcatcagttaatctgctgtgagaactccctcctc |
196 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||| |
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| T |
39524092 |
agatcaagcaaagggattttcaatccaaggtttatgttaggtaaaggcgagccttgaattgttgttgcatcagttaatctgctgtgagaacttcctcctc |
39524191 |
T |
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| Q |
197 |
tggcagctggaatgggcaaccattcggaattctcaacaggcctttg |
242 |
Q |
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| T |
39524192 |
tggcagctggaataggcaaccattcggacttctcaacaggcctttg |
39524237 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 105; E-Value: 2e-52
Query Start/End: Original strand, 22 - 242
Target Start/End: Original strand, 39575171 - 39575391
Alignment:
| Q |
22 |
actcccttataaacaattccaaaaccaccctttccaataatcctcttcgcatcaaaattatccgttgcaaattgaagatcaagcaaagggattttcaatc |
121 |
Q |
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||||||||||||||| ||||||||||||||||||||||||||||||| | ||||||||| || || || | |||||| |||||||| | |||||||| | |
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| T |
39575171 |
actcccttataaacatttccaaaaccaccctttccaataatcctctttgtatcaaaattctcggtggcgatttgaaggtcaagcaaggagattttcatgc |
39575270 |
T |
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| Q |
122 |
caaggtttatgttaggtaaaggtgagccttgaattgttgttgcatcagttaatctgctgtgagaactccctcctctggcagctggaatgggcaaccattc |
221 |
Q |
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|||||||||||||||||||||||||||||||| ||||| || ||| ||||||| |||| |||||| |||||||| |||| |||||| |||||| | || |
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| T |
39575271 |
caaggtttatgttaggtaaaggtgagccttgagttgtttttccataagttaatttgctatgagaaatccctcctgcagcagttggaatcggcaacaaatc |
39575370 |
T |
|
| Q |
222 |
ggaattctcaacaggcctttg |
242 |
Q |
| |
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| || |||||||||||||||| |
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| T |
39575371 |
gaaactctcaacaggcctttg |
39575391 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 91; E-Value: 3e-44
Query Start/End: Original strand, 22 - 216
Target Start/End: Original strand, 39543336 - 39543530
Alignment:
| Q |
22 |
actcccttataaacaattccaaaaccaccctttccaataatcctcttcgcatcaaaattatccgttgcaaattgaagatcaagcaaagggattttcaatc |
121 |
Q |
| |
|
||||||||||||||| ||||||||||||||||||||||||||||||| | ||||||||| || || || | |||||| |||||||| | |||||||| | |
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| T |
39543336 |
actcccttataaacatttccaaaaccaccctttccaataatcctctttgtatcaaaattctcggtggcgatttgaaggtcaagcaaggagattttcatgc |
39543435 |
T |
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| Q |
122 |
caaggtttatgttaggtaaaggtgagccttgaattgttgttgcatcagttaatctgctgtgagaactccctcctctggcagctggaatgggcaac |
216 |
Q |
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|||||||||||||||||||||||||||||||| ||||| || ||| ||||||| |||| |||||| || ||||| |||| |||||| |||||| |
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| T |
39543436 |
caaggtttatgttaggtaaaggtgagccttgagttgtttttccataagttaatttgctatgagaaatctctcctgcagcagttggaatcggcaac |
39543530 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 79; E-Value: 5e-37
Query Start/End: Original strand, 22 - 176
Target Start/End: Original strand, 39579707 - 39579861
Alignment:
| Q |
22 |
actcccttataaacaattccaaaaccaccctttccaataatcctcttcgcatcaaaattatccgttgcaaattgaagatcaagcaaagggattttcaatc |
121 |
Q |
| |
|
||||||||||||||| ||||||||||||| ||||| || ||||| | |||||||||||| || ||||| ||||||||||||||||| | |||||||| | |
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| T |
39579707 |
actcccttataaacatttccaaaaccaccttttccgattatcctatccgcatcaaaattctctgttgcgaattgaagatcaagcaaggagattttcaggc |
39579806 |
T |
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| Q |
122 |
caaggtttatgttaggtaaaggtgagccttgaattgttgttgcatcagttaatct |
176 |
Q |
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|||||||||||||||||||||| ||||||||| ||||| || ||| |||||||| |
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| T |
39579807 |
caaggtttatgttaggtaaaggcgagccttgagttgtttttccatatgttaatct |
39579861 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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