View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20654_low_31 (Length: 253)

Name: NF20654_low_31
Description: NF20654
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20654_low_31
NF20654_low_31
[»] chr4 (15 HSPs)
chr4 (6-123)||(46550706-46550823)
chr4 (16-123)||(17056615-17056722)
chr4 (9-123)||(47541809-47541925)
chr4 (16-123)||(41464802-41464911)
chr4 (16-123)||(52920087-52920197)
chr4 (21-116)||(15827131-15827229)
chr4 (25-123)||(47833504-47833603)
chr4 (155-205)||(46550626-46550676)
chr4 (15-123)||(36364868-36364972)
chr4 (16-123)||(39503504-39503615)
chr4 (16-123)||(20679841-20679951)
chr4 (28-113)||(46381481-46381568)
chr4 (155-201)||(47541735-47541781)
chr4 (157-199)||(47732466-47732508)
chr4 (51-123)||(42969971-42970043)
[»] chr1 (16 HSPs)
chr1 (16-123)||(16253029-16253136)
chr1 (16-123)||(24241478-24241585)
chr1 (16-123)||(41942781-41942888)
chr1 (16-123)||(21356794-21356901)
chr1 (16-123)||(34773420-34773528)
chr1 (16-123)||(39744169-39744276)
chr1 (10-114)||(38746028-38746133)
chr1 (16-123)||(2344969-2345077)
chr1 (16-94)||(48503922-48504000)
chr1 (155-208)||(24241614-24241667)
chr1 (157-201)||(34773345-34773389)
chr1 (16-118)||(7101359-7101464)
chr1 (158-199)||(38745959-38746000)
chr1 (159-199)||(8971569-8971609)
chr1 (155-199)||(41942916-41942960)
chr1 (155-199)||(16253166-16253210)
[»] chr3 (15 HSPs)
chr3 (16-123)||(44880254-44880361)
chr3 (12-123)||(1994850-1994961)
chr3 (16-123)||(22220210-22220318)
chr3 (17-123)||(2008400-2008508)
chr3 (11-123)||(22831174-22831286)
chr3 (16-123)||(39056875-39056981)
chr3 (155-199)||(25199079-25199123)
chr3 (16-92)||(26466362-26466438)
chr3 (156-199)||(22220346-22220389)
chr3 (156-200)||(2008537-2008581)
chr3 (158-198)||(22831103-22831143)
chr3 (36-123)||(28297695-28297782)
chr3 (155-205)||(45805449-45805499)
chr3 (16-73)||(45805583-45805640)
chr3 (155-200)||(1994780-1994825)
[»] chr7 (11 HSPs)
chr7 (12-123)||(8541427-8541539)
chr7 (16-123)||(34998528-34998637)
chr7 (16-123)||(10544991-10545100)
chr7 (16-95)||(39187986-39188065)
chr7 (16-123)||(45627414-45627524)
chr7 (21-73)||(32676800-32676852)
chr7 (6-62)||(15878797-15878853)
chr7 (155-201)||(8541565-8541611)
chr7 (155-199)||(30783412-30783456)
chr7 (155-199)||(34998665-34998709)
chr7 (64-123)||(40076693-40076753)
[»] chr8 (18 HSPs)
chr8 (12-123)||(42056676-42056787)
chr8 (4-200)||(30208187-30208380)
chr8 (12-111)||(39402038-39402140)
chr8 (11-123)||(5594779-5594891)
chr8 (17-123)||(1162117-1162222)
chr8 (16-123)||(40719895-40720005)
chr8 (11-123)||(35179155-35179268)
chr8 (13-123)||(31333162-31333273)
chr8 (34-123)||(42921385-42921474)
chr8 (158-198)||(5594922-5594962)
chr8 (60-123)||(30362018-30362082)
chr8 (16-116)||(36132676-36132776)
chr8 (155-199)||(39401955-39401999)
chr8 (155-199)||(40719821-40719865)
chr8 (155-201)||(1162043-1162089)
chr8 (155-199)||(34173559-34173603)
chr8 (155-199)||(34514581-34514625)
chr8 (155-202)||(35179296-35179341)
[»] chr5 (20 HSPs)
chr5 (16-123)||(33758794-33758901)
chr5 (35-117)||(23151436-23151518)
chr5 (11-123)||(2976446-2976556)
chr5 (25-123)||(34849451-34849550)
chr5 (26-123)||(30319817-30319915)
chr5 (16-123)||(20524604-20524711)
chr5 (16-123)||(10719746-10719854)
chr5 (36-123)||(37872201-37872291)
chr5 (13-53)||(37872302-37872342)
chr5 (9-121)||(8026460-8026577)
chr5 (24-123)||(3454259-3454358)
chr5 (157-200)||(36442660-36442703)
chr5 (65-123)||(42285218-42285277)
chr5 (155-199)||(10719883-10719927)
chr5 (155-202)||(3454387-3454434)
chr5 (155-201)||(16778273-16778319)
chr5 (156-198)||(21239003-21239045)
chr5 (158-199)||(20654461-20654502)
chr5 (155-199)||(23145929-23145973)
chr5 (155-199)||(37872129-37872173)
[»] chr2 (16 HSPs)
chr2 (16-123)||(3870024-3870135)
chr2 (16-123)||(11028779-11028887)
chr2 (16-109)||(36400857-36400952)
chr2 (10-123)||(28734070-28734183)
chr2 (16-123)||(37721449-37721557)
chr2 (16-123)||(38879517-38879625)
chr2 (16-123)||(3647418-3647526)
chr2 (155-199)||(3870164-3870208)
chr2 (17-123)||(30706149-30706258)
chr2 (155-199)||(34480055-34480099)
chr2 (16-123)||(6512079-6512191)
chr2 (156-199)||(36400993-36401036)
chr2 (62-123)||(3949317-3949378)
chr2 (155-199)||(30706078-30706122)
chr2 (155-200)||(37721585-37721630)
chr2 (155-199)||(9009119-9009163)
[»] scaffold0095 (2 HSPs)
scaffold0095 (12-111)||(35362-35464)
scaffold0095 (155-199)||(35503-35547)
[»] chr6 (4 HSPs)
chr6 (16-123)||(2141240-2141348)
chr6 (11-123)||(7080148-7080262)
chr6 (16-110)||(25336928-25337023)
chr6 (157-197)||(17852650-17852690)
[»] scaffold0288 (2 HSPs)
scaffold0288 (16-95)||(18084-18163)
scaffold0288 (155-199)||(17977-18022)
[»] scaffold0009 (1 HSPs)
scaffold0009 (8-95)||(25680-25767)
[»] scaffold1339 (1 HSPs)
scaffold1339 (16-123)||(57-165)


Alignment Details
Target: chr4 (Bit Score: 94; Significance: 6e-46; HSPs: 15)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 94; E-Value: 6e-46
Query Start/End: Original strand, 6 - 123
Target Start/End: Complemental strand, 46550823 - 46550706
Alignment:
Q  6 aataaggagatattcttccatggtcacaagaccaaatcaataatgtttgaatacacacataaaaagattctcctctaaatattcaatcatcatttttatc 105  Q
    ||||| || ||||||||||||||||||||||||||||||||||||||| || ||| ||||||||||||||||||||||||||||||||||||||||||||    
T  46550823 aataatgaaatattcttccatggtcacaagaccaaatcaataatgtttaaacacatacataaaaagattctcctctaaatattcaatcatcatttttatc 46550724  T
Q  106 aatttcctctttattatt 123  Q
    ||||| ||||||||||||    
T  46550723 aattttctctttattatt 46550706  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 16 - 123
Target Start/End: Original strand, 17056615 - 17056722
Alignment:
Q  16 tattcttccatggtcacaagaccaaatcaataatgtttgaatacacacata-aaaagattctcctctaaatattcaatcatcatttttatcaatttcctc 114  Q
    |||||||||||||||||||||||||||||||| |||||||||||||||||| |||| ||| ||||  ||||||| ||||||  |||||||||||||||||    
T  17056615 tattcttccatggtcacaagaccaaatcaatagtgtttgaatacacacatataaaaaattgtccttaaaatatttaatcat-ttttttatcaatttcctc 17056713  T
Q  115 tttattatt 123  Q
    |||||||||    
T  17056714 tttattatt 17056722  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 9 - 123
Target Start/End: Complemental strand, 47541925 - 47541809
Alignment:
Q  9 aaggagatattcttccatggtcacaagaccaaatcaataatgtttgaatacacaca--taaaaagattctcctctaaatattcaatcatcatttttatca 106  Q
    |||||||||||||| |||| |||||||| |||||||||||| |||| | |||||||  |||||||||| ||||| ||||||||||||||| |||||||||    
T  47541925 aaggagatattctttcatgatcacaagatcaaatcaataatatttggacacacacacataaaaagattttcctcaaaatattcaatcatcttttttatca 47541826  T
Q  107 atttcctctttattatt 123  Q
    |||||||  ||||||||    
T  47541825 atttccttcttattatt 47541809  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 16 - 123
Target Start/End: Complemental strand, 41464911 - 41464802
Alignment:
Q  16 tattcttccatggtcacaagaccaaatcaataatgtttgaa--tacacacataaaaagattctcctctaaatattcaatcatcatttttatcaatttcct 113  Q
    ||||||| ||||||||||||| ||||||||||||  || ||  ||||||||||||||||||||| || ||||| ||||||||| |||||||||||||| |    
T  41464911 tattctttcatggtcacaagatcaaatcaataatacttaaacatacacacataaaaagattctcttcaaaatactcaatcatcttttttatcaatttctt 41464812  T
Q  114 ctttattatt 123  Q
    ||||||||||    
T  41464811 ctttattatt 41464802  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 16 - 123
Target Start/End: Complemental strand, 52920197 - 52920087
Alignment:
Q  16 tattcttccatggtcacaagaccaaatcaataatgtttgaatacacaca--taaaaagattctcctctaaatattcaatcatcattttt-atcaatttcc 112  Q
    |||||||||||||||||||||||||||||||||||||| |||||| | |  ||||||||||  | |  ||||||||||||||  ||||| |||||||| |    
T  52920197 tattcttccatggtcacaagaccaaatcaataatgtttaaatacatataaataaaaagatttacttaaaaatattcaatcatttttttttatcaattttc 52920098  T
Q  113 tctttattatt 123  Q
    |||||||||||    
T  52920097 tctttattatt 52920087  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 21 - 116
Target Start/End: Complemental strand, 15827229 - 15827131
Alignment:
Q  21 ttccatggtcacaagaccaaatcaataatgtttgaataca--cacataaaaagattctcctctaaatattcaatcatcattttt-atcaatttcctctt 116  Q
    |||||||||||||||||| |||||||||| ||||||||||  ||||||||||||||||  || ||||||||||| ||  ||||| |||||||| |||||    
T  15827229 ttccatggtcacaagaccgaatcaataatatttgaatacacacacataaaaagattcttgtcaaaatattcaattattttttttcatcaattttctctt 15827131  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 25 - 123
Target Start/End: Original strand, 47833504 - 47833603
Alignment:
Q  25 atggtcacaagaccaaatcaataatgtttgaa--tacacacataaaaagattctcctctaaatattcaatcatcatttttatcaatttcctctttattat 122  Q
    |||||| |||||||||||| ||| || ||| |  ||||||||||||||||   ||||| |||||||||||||| | ||||||||||||||||||||||||    
T  47833504 atggtcgcaagaccaaatctatagtggttggacatacacacataaaaagaccatcctcaaaatattcaatcatta-ttttatcaatttcctctttattat 47833602  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 155 - 205
Target Start/End: Complemental strand, 46550676 - 46550626
Alignment:
Q  155 accaaacactttttctttggtcctgtgaccatattaaaatttctcatagaa 205  Q
    |||||||||||||||||||||| ||||||||||||| |||||||| |||||    
T  46550676 accaaacactttttctttggtcttgtgaccatattagaatttctcttagaa 46550626  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 15 - 123
Target Start/End: Complemental strand, 36364972 - 36364868
Alignment:
Q  15 atattcttccatggtcacaagaccaaatcaataatgtttgaatacacacataaaaagattctcctctaaatattcaatcatcatttttatcaatttcctc 114  Q
    ||||| || ||||||| ||||||||||||||||||||||| | ||||| ||||||| ||  ||||  ||||||    |||| |||||||||||||| |||    
T  36364972 atattgttgcatggtcgcaagaccaaatcaataatgtttggacacacatataaaaatatggtccttaaaatat----tcattatttttatcaattttctc 36364877  T
Q  115 tttattatt 123  Q
    |||| ||||    
T  36364876 tttactatt 36364868  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 16 - 123
Target Start/End: Complemental strand, 39503615 - 39503504
Alignment:
Q  16 tattcttccatggtcacaagaccaaatcaataatgtttgaatac--acacataaaaagattctcctctaaatattcaa--tcatcatttttatcaatttc 111  Q
    |||||||| ||||||||||||| ||||||||| |||||||| ||  ||||||||||||||  || |  ||||||| ||  |  |  ||||||||||||||    
T  39503615 tattcttctatggtcacaagactaaatcaatagtgtttgaacacatacacataaaaagatgatctttaaaatatttaatttttttttttttatcaatttc 39503516  T
Q  112 ctctttattatt 123  Q
    ||||||||||||    
T  39503515 ctctttattatt 39503504  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 16 - 123
Target Start/End: Complemental strand, 20679951 - 20679841
Alignment:
Q  16 tattcttccatggtcacaagaccaaatcaataatgtttgaatacacacata---aaaagattctcctctaaatattcaatcatcatttttatcaatttcc 112  Q
    ||||||| ||||||| ||||| |||||||||| |||||| | ||||||| |   |||| ||  || |  ||||||||||| ||  |||||||||||||||    
T  20679951 tattctttcatggtctcaagatcaaatcaatagtgtttggacacacacacataaaaaaaatggtctttaaaatattcaattattttttttatcaatttcc 20679852  T
Q  113 tctttattatt 123  Q
    |||||||||||    
T  20679851 tctttattatt 20679841  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 28 - 113
Target Start/End: Original strand, 46381481 - 46381568
Alignment:
Q  28 gtcacaagaccaaatcaataatgtttgaatacaca--cataaaaagattctcctctaaatattcaatcatcatttttatcaatttcct 113  Q
    ||||||||||||||| |||| |||||||  |||||  |||||| ||||| ||||  ||| ||||||||||  ||||||||||||||||    
T  46381481 gtcacaagaccaaataaatagtgtttgagcacacatacataaagagattatcctaaaaacattcaatcattttttttatcaatttcct 46381568  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 155 - 201
Target Start/End: Complemental strand, 47541781 - 47541735
Alignment:
Q  155 accaaacactttttctttggtcctgtgaccatattaaaatttctcat 201  Q
    ||||||||||||||||||| ||  |||||||||||| ||||||||||    
T  47541781 accaaacactttttctttgatctcgtgaccatattagaatttctcat 47541735  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 157 - 199
Target Start/End: Original strand, 47732466 - 47732508
Alignment:
Q  157 caaacactttttctttggtcctgtgaccatattaaaatttctc 199  Q
    |||||| |||||||||| |||||||||||||||| ||||||||    
T  47732466 caaacaatttttctttgatcctgtgaccatattagaatttctc 47732508  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 51 - 123
Target Start/End: Original strand, 42969971 - 42970043
Alignment:
Q  51 tttgaatacacacataaaaagattctcctctaaatattcaatcatcatttttatcaatttcctctttattatt 123  Q
    |||||| ||||  ||||||||||| ||||  |||||||||||| |  |||||||||||||  |||||||||||    
T  42969971 tttgaacacacgtataaaaagattatccttaaaatattcaatctttttttttatcaattttatctttattatt 42970043  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 84; Significance: 5e-40; HSPs: 16)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 84; E-Value: 5e-40
Query Start/End: Original strand, 16 - 123
Target Start/End: Original strand, 16253029 - 16253136
Alignment:
Q  16 tattcttccatggtcacaagaccaaatcaataatgtttgaatacacacataaaaagattctcctctaaatattcaatcatcatttttatcaatttcctct 115  Q
    |||||||||||| |||||||||||||||||||||||||| | ||||||||||||||||||||||| ||||||||||||||| |||||||||||||||||     
T  16253029 tattcttccatgttcacaagaccaaatcaataatgtttggagacacacataaaaagattctcctcaaaatattcaatcatcttttttatcaatttcctcc 16253128  T
Q  116 ttattatt 123  Q
    ||||||||    
T  16253129 ttattatt 16253136  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 84; E-Value: 5e-40
Query Start/End: Original strand, 16 - 123
Target Start/End: Original strand, 24241478 - 24241585
Alignment:
Q  16 tattcttccatggtcacaagaccaaatcaataatgtttgaatacacacataaaaagattctcctctaaatattcaatcatcatttttatcaatttcctct 115  Q
    |||||||||||||||||| |||||||||||||||||||| | ||||||||||||||||||||||| ||||||||||||||| |||||||||||||||||     
T  24241478 tattcttccatggtcacatgaccaaatcaataatgtttggacacacacataaaaagattctcctcaaaatattcaatcatcttttttatcaatttcctcc 24241577  T
Q  116 ttattatt 123  Q
    ||||||||    
T  24241578 ttattatt 24241585  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 16 - 123
Target Start/End: Original strand, 41942781 - 41942888
Alignment:
Q  16 tattcttccatggtcacaagaccaaatcaataatgtttgaatacacacataaaaagattctcctctaaatattcaatcatcatttttatcaatttcctct 115  Q
    ||||||| ||||||||||||||||||||||||||||||| | ||| |||||||||||||||| || |||||||||||||||||||||||||||||||||     
T  41942781 tattctttcatggtcacaagaccaaatcaataatgtttggacacatacataaaaagattctcttcgaaatattcaatcatcatttttatcaatttcctcc 41942880  T
Q  116 ttattatt 123  Q
    ||||||||    
T  41942881 ttattatt 41942888  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 16 - 123
Target Start/End: Original strand, 21356794 - 21356901
Alignment:
Q  16 tattcttccatggtcacaagaccaaatcaataatgtttgaatacacacataaaaagattctcctctaaatattcaatcatcatttttatcaatttcctct 115  Q
    |||||||  |||||||||||||||||||||||||||||| | ||||| |||||||||||||| || ||||||||||||||| ||||||||||||| |||     
T  21356794 tattcttttatggtcacaagaccaaatcaataatgtttggacacacatataaaaagattctcttcaaaatattcaatcatcttttttatcaattttctca 21356893  T
Q  116 ttattatt 123  Q
    ||||||||    
T  21356894 ttattatt 21356901  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 16 - 123
Target Start/End: Complemental strand, 34773528 - 34773420
Alignment:
Q  16 tattcttccatggtcacaagaccaaatcaataatgtttgaa--tacacacataaaaagattctcctctaaatattcaatcatcatttttatcaatttcct 113  Q
    |||||||||||| |||||||||||| ||||||||||||| |  |||||||||||||||||||||||| ||||||||||||||  ||||||| ||||||||    
T  34773528 tattcttccatgatcacaagaccaactcaataatgtttgcacatacacacataaaaagattctcctcaaaatattcaatcatattttttattaatttcct 34773429  T
Q  114 ctttattatt 123  Q
     |||||||||    
T  34773428 -tttattatt 34773420  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 16 - 123
Target Start/End: Complemental strand, 39744276 - 39744169
Alignment:
Q  16 tattcttccatggtcacaagaccaaatcaataatgtttgaatacacacataaaaagattctcctctaaatattcaatcatcatttttatcaatttcctct 115  Q
    |||||||| |||||||||||||||||||||||||||||| | ||||| ||||||||||||| |||  |||| ||||||||  ||||||||| |||||||     
T  39744276 tattcttctatggtcacaagaccaaatcaataatgtttggacacacatataaaaagattcttctcagaatagtcaatcattttttttatcattttcctcc 39744177  T
Q  116 ttattatt 123  Q
    ||||||||    
T  39744176 ttattatt 39744169  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 10 - 114
Target Start/End: Complemental strand, 38746133 - 38746028
Alignment:
Q  10 aggagatattcttccatggtcacaagaccaaatcaataatgtttga-atacacacataaaaagattctcctctaaatattcaatcatcatttttatcaat 108  Q
    |||||| |||||||||| |||||||||||||||||||||| || || | |||| |||||| ||||||||||| ||||||||||||||| || || |||||    
T  38746133 aggagacattcttccatcgtcacaagaccaaatcaataattttggacacacacccataaatagattctcctcaaaatattcaatcatctttgttttcaat 38746034  T
Q  109 ttcctc 114  Q
    ||||||    
T  38746033 ttcctc 38746028  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 16 - 123
Target Start/End: Original strand, 2344969 - 2345077
Alignment:
Q  16 tattcttccatggtcacaagaccaaatcaataatgtttgaata--cacacataaaaagattctcctctaaatattcaatcatcatttttatcaatttcct 113  Q
    ||||||||| ||||||||||||||||||||||||||||| |||  |||||||||||| ||| || |  ||| ||||||||||| ||||||||||||||||    
T  2344969 tattcttccttggtcacaagaccaaatcaataatgtttggataagcacacataaaaa-attttctttaaaaaattcaatcatcttttttatcaatttcct 2345067  T
Q  114 ctttattatt 123  Q
    | || |||||    
T  2345068 ccttcttatt 2345077  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 16 - 94
Target Start/End: Original strand, 48503922 - 48504000
Alignment:
Q  16 tattcttccatggtcacaagaccaaatcaataatgtttgaatacacacataaaaagattctcctctaaatattcaatca 94  Q
    |||||||||||| ||| ||||||||||||||||| |||| | ||||| |||||| ||||||| || ||||| |||||||    
T  48503922 tattcttccatgttcataagaccaaatcaataatatttggacacacatataaaaggattctcatcaaaatactcaatca 48504000  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 155 - 208
Target Start/End: Original strand, 24241614 - 24241667
Alignment:
Q  155 accaaacactttttctttggtcctgtgaccatattaaaatttctcatagaataa 208  Q
    |||||| ||||||||||||||||||||||||||||| |||||||| || |||||    
T  24241614 accaaatactttttctttggtcctgtgaccatattagaatttctcttataataa 24241667  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 157 - 201
Target Start/End: Complemental strand, 34773389 - 34773345
Alignment:
Q  157 caaacactttttctttggtcctgtgaccatattaaaatttctcat 201  Q
    |||||||||||||||||||||||| ||||||||| ||||||||||    
T  34773389 caaacactttttctttggtcctgtaaccatattagaatttctcat 34773345  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 16 - 118
Target Start/End: Complemental strand, 7101464 - 7101359
Alignment:
Q  16 tattcttccatggtcacaagaccaaatcaataatgtttga----atacacacataaaaagattctcctctaaatattcaatcatcatttttatcaatttc 111  Q
    |||||| ||||| ||| ||||||||||||||| |||| ||    | ||||||||||||||||  ||||  ||||||||||||||   |||||||||||||    
T  7101464 tattctcccatgatcataagaccaaatcaatagtgttggaacatacacacacataaaaagatggtccttaaaatattcaatcat-tcttttatcaatttc 7101366  T
Q  112 ctcttta 118  Q
    |||||||    
T  7101365 ctcttta 7101359  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 158 - 199
Target Start/End: Complemental strand, 38746000 - 38745959
Alignment:
Q  158 aaacactttttctttggtcctgtgaccatattaaaatttctc 199  Q
    ||||||||||||||||| | ||||||||||||||||||||||    
T  38746000 aaacactttttctttggccgtgtgaccatattaaaatttctc 38745959  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 159 - 199
Target Start/End: Original strand, 8971569 - 8971609
Alignment:
Q  159 aacactttttctttggtcctgtgaccatattaaaatttctc 199  Q
    |||||||||| ||||||||||||||||||||| ||||||||    
T  8971569 aacactttttttttggtcctgtgaccatattagaatttctc 8971609  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 155 - 199
Target Start/End: Original strand, 41942916 - 41942960
Alignment:
Q  155 accaaacactttttctttggtcctgtgaccatattaaaatttctc 199  Q
    |||||||||||| ||||||||| ||||||||||||| ||||||||    
T  41942916 accaaacactttatctttggtcgtgtgaccatattagaatttctc 41942960  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 155 - 199
Target Start/End: Original strand, 16253166 - 16253210
Alignment:
Q  155 accaaacactttttctttggtcctgtgaccatattaaaatttctc 199  Q
    ||||||||||||||||||| || ||||| ||||||| ||||||||    
T  16253166 accaaacactttttctttgatcatgtgatcatattagaatttctc 16253210  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 80; Significance: 1e-37; HSPs: 15)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 16 - 123
Target Start/End: Original strand, 44880254 - 44880361
Alignment:
Q  16 tattcttccatggtcacaagaccaaatcaataatgtttgaatacacacataaaaagattctcctctaaatattcaatcatcatttttatcaatttcctct 115  Q
    ||||||| ||||||||||||||||||||||||||||||||| |||||||||||| |||||||||| ||||||||| ||||| |||||||||||||||||     
T  44880254 tattctttcatggtcacaagaccaaatcaataatgtttgaacacacacataaaacgattctcctcaaaatattcagtcatcttttttatcaatttcctcc 44880353  T
Q  116 ttattatt 123  Q
    ||||||||    
T  44880354 ttattatt 44880361  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 72; E-Value: 7e-33
Query Start/End: Original strand, 12 - 123
Target Start/End: Complemental strand, 1994961 - 1994850
Alignment:
Q  12 gagatattcttccatggtcacaagaccaaatcaataatgtttgaatacacacataaaaagattctcctctaaatattcaatcatcatttttatcaatttc 111  Q
    |||||||||| | |||||||||||||||||||||||||||||| | | ||||| ||||||||||||||  ||||||||||||||| |||||||||||| |    
T  1994961 gagatattctactatggtcacaagaccaaatcaataatgtttggacaaacacacaaaaagattctcctgaaaatattcaatcatcttttttatcaattac 1994862  T
Q  112 ctctttattatt 123  Q
    ||||||||||||    
T  1994861 ctctttattatt 1994850  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 69; E-Value: 5e-31
Query Start/End: Original strand, 16 - 123
Target Start/End: Original strand, 22220210 - 22220318
Alignment:
Q  16 tattcttccatggtcacaagaccaaatcaataatgtttgaatacacacataaaaagattctcctctaaatattcaatcatc-atttttatcaatttcctc 114  Q
    |||||||||||||||| |||| ||||||||||||||||| | ||||||||||||||||||| ||| |||||||||||||||  |||||||||||||||||    
T  22220210 tattcttccatggtcaaaagatcaaatcaataatgtttgtacacacacataaaaagattcttctcaaaatattcaatcatctttttttatcaatttcctc 22220309  T
Q  115 tttattatt 123  Q
     ||||||||    
T  22220310 cttattatt 22220318  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 17 - 123
Target Start/End: Original strand, 2008400 - 2008508
Alignment:
Q  17 attcttccatggtcacaagaccaaatcaataatgtttgaatacacacata--aaaagattctcctctaaatattcaatcatcatttttatcaatttcctc 114  Q
    ||||||||||| ||||||||||||||||||||| |||| | |||||||||  |||||||||||||| ||||||||||||||| ||||||||||||| |||    
T  2008400 attcttccatgatcacaagaccaaatcaataatatttggacacacacatataaaaagattctcctcaaaatattcaatcatcttttttatcaattttctc 2008499  T
Q  115 tttattatt 123  Q
     ||||||||    
T  2008500 cttattatt 2008508  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 11 - 123
Target Start/End: Complemental strand, 22831286 - 22831174
Alignment:
Q  11 ggagatattcttccatggtcacaagaccaaatcaataatgtttgaatacacacataaaaagattctcctctaaatattcaatcatcatttttatcaattt 110  Q
    |||||||||||||  |||||||||||| ||||||||||| |||| | ||||||||| ||||||||| ||| ||||||||||||||| ||||||||| |||    
T  22831286 ggagatattcttctctggtcacaagactaaatcaataatatttggacacacacatataaagattcttctcaaaatattcaatcatcttttttatcacttt 22831187  T
Q  111 cctctttattatt 123  Q
    |||| ||||||||    
T  22831186 cctccttattatt 22831174  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 16 - 123
Target Start/End: Complemental strand, 39056981 - 39056875
Alignment:
Q  16 tattcttccatggtcacaagaccaaatcaataatgtttgaatacacacataaaaagattctcctctaaatattcaatcatcatttttatcaatttcctct 115  Q
    |||||||||||| || |||||||||||| |||||||||| | ||||||||||||||||| ||||| ||||||||||||||| |||||||| |||| |||     
T  39056981 tattcttccatgatcgcaagaccaaatctataatgtttggacacacacataaaaagattttcctcaaaatattcaatcatc-tttttatcgattttctcc 39056883  T
Q  116 ttattatt 123  Q
    ||| ||||    
T  39056882 ttaatatt 39056875  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 155 - 199
Target Start/End: Original strand, 25199079 - 25199123
Alignment:
Q  155 accaaacactttttctttggtcctgtgaccatattaaaatttctc 199  Q
    |||||||||||||||||||||||||||||||||||| ||||||||    
T  25199079 accaaacactttttctttggtcctgtgaccatattagaatttctc 25199123  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 16 - 92
Target Start/End: Complemental strand, 26466438 - 26466362
Alignment:
Q  16 tattcttccatggtcacaagaccaaatcaataatgtttgaatacacacataaaaagattctcctctaaatattcaat 92  Q
    ||||||||||||||||||||| ||||| ||||||||||||| ||| | |||||||||||||  |  |||||||||||    
T  26466438 tattcttccatggtcacaagatcaaattaataatgtttgaacacatatataaaaagattctttttaaaatattcaat 26466362  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 156 - 199
Target Start/End: Original strand, 22220346 - 22220389
Alignment:
Q  156 ccaaacactttttctttggtcctgtgaccatattaaaatttctc 199  Q
    ||||| ||||||||||||||||||||||||||||||||||||||    
T  22220346 ccaaatactttttctttggtcctgtgaccatattaaaatttctc 22220389  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 156 - 200
Target Start/End: Original strand, 2008537 - 2008581
Alignment:
Q  156 ccaaacactttttctttggtcctgtgaccatattaaaatttctca 200  Q
    ||||||||| ||||||||||||||||||||||||| |||||||||    
T  2008537 ccaaacactatttctttggtcctgtgaccatattagaatttctca 2008581  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 158 - 198
Target Start/End: Complemental strand, 22831143 - 22831103
Alignment:
Q  158 aaacactttttctttggtcctgtgaccatattaaaatttct 198  Q
    |||||||||||||||| ||||||||||||||||||||||||    
T  22831143 aaacactttttctttgatcctgtgaccatattaaaatttct 22831103  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 36 - 123
Target Start/End: Original strand, 28297695 - 28297782
Alignment:
Q  36 accaaatcaataatgtttgaatacacacataaaaagattctcctctaaatattcaatcatcatttttatcaatttcctctttattatt 123  Q
    ||||||||||||| ||||| | | | | ||||||||||||||||  | |||||| |||||   |||||||||||||||||||||||||    
T  28297695 accaaatcaataaagtttggacatatatataaaaagattctccttaacatattcgatcatttcttttatcaatttcctctttattatt 28297782  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 155 - 205
Target Start/End: Complemental strand, 45805499 - 45805449
Alignment:
Q  155 accaaacactttttctttggtcctgtgaccatattaaaatttctcatagaa 205  Q
    |||||||||||||| ||||||| ||||||||||||| ||||||||| ||||    
T  45805499 accaaacactttttatttggtcatgtgaccatattagaatttctcagagaa 45805449  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 16 - 73
Target Start/End: Complemental strand, 45805640 - 45805583
Alignment:
Q  16 tattcttccatggtcacaagaccaaatcaataatgtttgaatacacacataaaaagat 73  Q
    |||||||||||| | |||||| |||||||||| |||||| | ||||||||||||||||    
T  45805640 tattcttccatgattacaagatcaaatcaatagtgtttgcacacacacataaaaagat 45805583  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 155 - 200
Target Start/End: Complemental strand, 1994825 - 1994780
Alignment:
Q  155 accaaacactttttctttggtcctgtgaccatattaaaatttctca 200  Q
    |||||| ||| ||||||||||| ||||||||||||| |||||||||    
T  1994825 accaaatactatttctttggtcatgtgaccatattagaatttctca 1994780  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 77; Significance: 8e-36; HSPs: 11)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 77; E-Value: 8e-36
Query Start/End: Original strand, 12 - 123
Target Start/End: Original strand, 8541427 - 8541539
Alignment:
Q  12 gagatattcttccatggtcacaagaccaaatcaataatgtttgaatacacacataaaaagattctcctctaaatattcaatcatca-tttttatcaattt 110  Q
    |||||||||||  |||||||||||||||||||||||||||||||| |||||| |||||||||||||||| |||||||||||||| | |||||||||||||    
T  8541427 gagatattcttttatggtcacaagaccaaatcaataatgtttgaacacacacgtaaaaagattctcctcaaaatattcaatcattattttttatcaattt 8541526  T
Q  111 cctctttattatt 123  Q
    |||| ||||||||    
T  8541527 cctccttattatt 8541539  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 16 - 123
Target Start/End: Original strand, 34998528 - 34998637
Alignment:
Q  16 tattcttccatggtcacaagaccaaatcaataatgtttgaatacacacata--aaaagattctcctctaaatattcaatcatcatttttatcaatttcct 113  Q
    ||||||||||||||||||||||||||||||||||||||| | |||||||||  |||||||||||||| |||||||||||||| |||||||||||||| ||    
T  34998528 tattcttccatggtcacaagaccaaatcaataatgtttggacacacacatataaaaagattctcctcaaaatattcaatcattatttttatcaattttct 34998627  T
Q  114 ctttattatt 123  Q
    | ||||||||    
T  34998628 ccttattatt 34998637  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 16 - 123
Target Start/End: Original strand, 10544991 - 10545100
Alignment:
Q  16 tattcttccatggtcacaagaccaaatcaataatgtttgaatacacacataaaaagattctcctctaaatattcaatcatcatt--tttatcaatttcct 113  Q
    |||||||||| | |||||||||| |||||||| | |||| | ||||||||||||||||| |  |  ||||||||||||||  ||  ||||||||||||||    
T  10544991 tattcttccacgatcacaagaccgaatcaatagtatttggagacacacataaaaagattatttttaaaatattcaatcattttttatttatcaatttcct 10545090  T
Q  114 ctttattatt 123  Q
    ||||||||||    
T  10545091 ctttattatt 10545100  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 16 - 95
Target Start/End: Complemental strand, 39188065 - 39187986
Alignment:
Q  16 tattcttccatggtcacaagaccaaatcaataatgtttgaatacacacataaaaagattctcctctaaatattcaatcat 95  Q
    |||||||||||||||| ||||||||||||||| | |||| | |||| |||||||||||  ||||  ||||||||||||||    
T  39188065 tattcttccatggtcagaagaccaaatcaatagtatttggacacacgcataaaaagatggtccttaaaatattcaatcat 39187986  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 16 - 123
Target Start/End: Complemental strand, 45627524 - 45627414
Alignment:
Q  16 tattcttccatggtcacaagaccaaatcaataatg-tttga-atacacacat-aaaaagattctcctctaaatattcaatcatcatttttatcaatttcc 112  Q
    |||||||||||||||||| ||||||||||||| || ||||| | |||||||| ||||| ||| ||||  ||||||| ||||||  |||||||||||||||    
T  45627524 tattcttccatggtcacaggaccaaatcaatagtgttttgacacacacacataaaaaaaattgtccttaaaatatttaatcattttttttatcaatttcc 45627425  T
Q  113 tctttattatt 123  Q
    | | |||||||    
T  45627424 tttatattatt 45627414  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 21 - 73
Target Start/End: Original strand, 32676800 - 32676852
Alignment:
Q  21 ttccatggtcacaagaccaaatcaataatgtttgaatacacacataaaaagat 73  Q
    ||||||||||||||||||||||||||| |||||| |||||||  |||||||||    
T  32676800 ttccatggtcacaagaccaaatcaatagtgtttggatacacatgtaaaaagat 32676852  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 6 - 62
Target Start/End: Complemental strand, 15878853 - 15878797
Alignment:
Q  6 aataaggagatattcttccatggtcacaagaccaaatcaataatgtttgaatacaca 62  Q
    ||||| |||||||||||| || ||||||||||||||||||||  ||||| |||||||    
T  15878853 aataaagagatattcttctattgtcacaagaccaaatcaatagcgtttggatacaca 15878797  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 155 - 201
Target Start/End: Original strand, 8541565 - 8541611
Alignment:
Q  155 accaaacactttttctttggtcctgtgaccatattaaaatttctcat 201  Q
    |||||||||| |||||||| |||| | ||||||||||||||||||||    
T  8541565 accaaacactatttctttgatcctataaccatattaaaatttctcat 8541611  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 155 - 199
Target Start/End: Complemental strand, 30783456 - 30783412
Alignment:
Q  155 accaaacactttttctttggtcctgtgaccatattaaaatttctc 199  Q
    |||||||||||||| ||||||| ||||||||| ||| ||||||||    
T  30783456 accaaacactttttatttggtcatgtgaccattttagaatttctc 30783412  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 155 - 199
Target Start/End: Original strand, 34998665 - 34998709
Alignment:
Q  155 accaaacactttttctttggtcctgtgaccatattaaaatttctc 199  Q
    |||||| |||||||||||| || ||||||||||||| ||||||||    
T  34998665 accaaatactttttctttgatcatgtgaccatattagaatttctc 34998709  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 64 - 123
Target Start/End: Complemental strand, 40076753 - 40076693
Alignment:
Q  64 ataaaaagattctcctctaaatattcaatcatcattttt-atcaatttcctctttattatt 123  Q
    |||||||||||||  |  ||||||||||||||| ||||| |||||||||||| ||||||||    
T  40076753 ataaaaagattcttttaaaaatattcaatcatctttttttatcaatttcctccttattatt 40076693  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 76; Significance: 3e-35; HSPs: 18)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 12 - 123
Target Start/End: Original strand, 42056676 - 42056787
Alignment:
Q  12 gagatattcttccatggtcacaagaccaaatcaataatgtttgaatacacacataaaaagattctcctctaaatattcaatcatcatttttatcaatttc 111  Q
    ||||||||||||||||||||||||||||||||||||||||||| | ||| |||||||||||||||| |  ||||||||||||||| |||||||||||||     
T  42056676 gagatattcttccatggtcacaagaccaaatcaataatgtttggacacaaacataaaaagattctctttaaaatattcaatcatcttttttatcaatttt 42056775  T
Q  112 ctctttattatt 123  Q
    ||| ||||||||    
T  42056776 ctccttattatt 42056787  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 72; E-Value: 7e-33
Query Start/End: Original strand, 4 - 200
Target Start/End: Original strand, 30208187 - 30208380
Alignment:
Q  4 agaataaggagatattcttccatggtcacaagaccaaatcaataatgtttgaatac--acacataaaaagattctcctctaaatattcaatcatcatttt 101  Q
    |||||| |||| |||||||||||||||| |||||||||||||||||||||| | ||  | ||||||||||||||||||| ||||||||||||||| ||||    
T  30208187 agaatatggaggtattcttccatggtcataagaccaaatcaataatgtttggacacatatacataaaaagattctcctc-aaatattcaatcatcttttt 30208285  T
Q  102 tatcaatttcctctttattattnnnnnnntacttctttannnnnnnnnnnnnnaccaaacactttttctttggtcctgtgaccatattaaaatttctca 200  Q
    ||||||||||||| ||||||||        |||||||||              |||||||||||||||||||||||||||||||||||| |||||||||    
T  30208286 tatcaatttcctccttattattaaaaaaacacttcttta----tgtgtgtgtgaccaaacactttttctttggtcctgtgaccatattagaatttctca 30208380  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 12 - 111
Target Start/End: Complemental strand, 39402140 - 39402038
Alignment:
Q  12 gagatattcttccatggtcacaagaccaaatcaataatgtttga--atacacacataaaaagattctcctctaaatattcaatcatc-atttttatcaat 108  Q
    |||||||||||||||||||||||||||||||||||||| |||||  ||||| ||||||||||||||||||| |||||||||||||||  |||||||||||    
T  39402140 gagatattcttccatggtcacaagaccaaatcaataatatttgaacatacatacataaaaagattctcctcaaaatattcaatcatctttttttatcaat 39402041  T
Q  109 ttc 111  Q
    |||    
T  39402040 ttc 39402038  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 11 - 123
Target Start/End: Original strand, 5594779 - 5594891
Alignment:
Q  11 ggagatattcttccatggtcacaagaccaaatcaataatgtttgaatacacacataaaaagattctcctctaaatattcaatcatcatttttatcaattt 110  Q
    |||||||||||||  |||||||||||| ||||||||||| |||| | ||||||||| ||||||||| ||| ||||||||||||||| ||||||||| |||    
T  5594779 ggagatattcttctctggtcacaagactaaatcaataatatttggacacacacatataaagattcttctcaaaatattcaatcatcttttttatcacttt 5594878  T
Q  111 cctctttattatt 123  Q
    |||| ||||||||    
T  5594879 cctccttattatt 5594891  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 17 - 123
Target Start/End: Complemental strand, 1162222 - 1162117
Alignment:
Q  17 attcttccatggtcacaagaccaaatcaataatgtttgaatacacacataaaaagattctcctctaaatattcaatcatcatttttatcaatttcctctt 116  Q
    |||| |||||| |||||||||||||||| |||| |||||| |||||||||||| |||||||||| |||||||||||  || || ||||||||||||||||    
T  1162222 attcgtccatgatcacaagaccaaatcagtaatatttgaacacacacataaaaggattctcctcaaaatattcaat-gtctttcttatcaatttcctctt 1162124  T
Q  117 tattatt 123  Q
    |||||||    
T  1162123 tattatt 1162117  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 16 - 123
Target Start/End: Complemental strand, 40720005 - 40719895
Alignment:
Q  16 tattcttccatggtcacaagaccaaatcaataatgtttgaatacacaca--taaaaagattctcctctaaatattcaatcatc-atttttatcaatttcc 112  Q
    |||||||||||||||| ||||  |||| ||||||||||| | |||||||  |||||||||||||||| |||||||||||||||  |||||||||||||||    
T  40720005 tattcttccatggtcaaaagattaaattaataatgtttggacacacacacataaaaagattctcctcaaaatattcaatcatctttttttatcaatttcc 40719906  T
Q  113 tctttattatt 123  Q
    || ||||||||    
T  40719905 tccttattatt 40719895  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 11 - 123
Target Start/End: Original strand, 35179155 - 35179268
Alignment:
Q  11 ggagatattcttccatggtcacaagaccaaatcaataatgtttgaatacacacataaaaagattctcctctaaatattcaatca-tcatttttatcaatt 109  Q
    |||| ||||||| |||||||| |||||||||||||||||||||| | ||||| ||||||||||||| ||| ||||||||||| | |  ||||||||||||    
T  35179155 ggaggtattctttcatggtcataagaccaaatcaataatgtttggacacacatataaaaagattcttctcaaaatattcaataatttttttttatcaatt 35179254  T
Q  110 tcctctttattatt 123  Q
    ||||  ||||||||    
T  35179255 tccttcttattatt 35179268  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 13 - 123
Target Start/End: Complemental strand, 31333273 - 31333162
Alignment:
Q  13 agatattcttccatggtcacaagaccaaatcaataatgtttgaatacacaca--taaaaagattctcctctaaatattcaatcatcatttttatcaattt 110  Q
    |||||||||||||| |||||||||||||||||| ||||||||  ||||||||  |||||||||| | ||  ||||||||||||||| ||||||||| |||    
T  31333273 agatattcttccatagtcacaagaccaaatcaa-aatgtttggttacacacacataaaaagattttacttaaaatattcaatcatcttttttatcagttt 31333175  T
Q  111 cctctttattatt 123  Q
     ||| ||||||||    
T  31333174 tctccttattatt 31333162  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 34 - 123
Target Start/End: Original strand, 42921385 - 42921474
Alignment:
Q  34 agaccaaatcaataatgtttgaatacacacataaaaagattctcctctaaatattcaatcatcatttttatcaatttcctctttattatt 123  Q
    ||||||||| ||||||||||||| ||| | ||||||||||||| ||| ||||| ||||||||| |||||||||||||| || ||||||||    
T  42921385 agaccaaattaataatgtttgaacacaaatataaaaagattcttctcaaaataatcaatcatcttttttatcaatttcatccttattatt 42921474  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 158 - 198
Target Start/End: Original strand, 5594922 - 5594962
Alignment:
Q  158 aaacactttttctttggtcctgtgaccatattaaaatttct 198  Q
    |||||||||||||||| ||||||||||||||||||||||||    
T  5594922 aaacactttttctttgatcctgtgaccatattaaaatttct 5594962  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 60 - 123
Target Start/End: Complemental strand, 30362082 - 30362018
Alignment:
Q  60 acacataaaaagattctcctctaaatattcaatcatca-tttttatcaatttcctctttattatt 123  Q
    ||||||||||| ||||||||| ||||||||||| || | |||||||||||||| || ||||||||    
T  30362082 acacataaaaaaattctcctcaaaatattcaattattattttttatcaatttcgtccttattatt 30362018  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 16 - 116
Target Start/End: Original strand, 36132676 - 36132776
Alignment:
Q  16 tattcttccatggtcacaagaccaaatcaataatgtttgaatacacacataaaaagattctcctctaaatattcaatcatcatttttatcaatttcctct 115  Q
    |||||||| || |||||||||| |||| |||| | |||| ||||||||||||||||||  |  |  ||||||| ||||||  ||||||| ||||||||||    
T  36132676 tattcttctatagtcacaagactaaattaatagtatttggatacacacataaaaagatggtttttaaaatatttaatcattttttttattaatttcctct 36132775  T
Q  116 t 116  Q
    |    
T  36132776 t 36132776  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 155 - 199
Target Start/End: Complemental strand, 39401999 - 39401955
Alignment:
Q  155 accaaacactttttctttggtcctgtgaccatattaaaatttctc 199  Q
    ||||||||||||||||||| || |||||| |||||||||||||||    
T  39401999 accaaacactttttctttgatcatgtgacgatattaaaatttctc 39401955  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 155 - 199
Target Start/End: Complemental strand, 40719865 - 40719821
Alignment:
Q  155 accaaacactttttctttggtcctgtgaccatattaaaatttctc 199  Q
    |||||||||||||||||||||| || |||||||||| ||||||||    
T  40719865 accaaacactttttctttggtcatgcgaccatattagaatttctc 40719821  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 155 - 201
Target Start/End: Complemental strand, 1162089 - 1162043
Alignment:
Q  155 accaaacactttttctttggtcctgtgaccatattaaaatttctcat 201  Q
    |||||||||||||||||| ||||| ||||||||| | ||||||||||    
T  1162089 accaaacactttttctttagtcctatgaccatataagaatttctcat 1162043  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 155 - 199
Target Start/End: Original strand, 34173559 - 34173603
Alignment:
Q  155 accaaacactttttctttggtcctgtgaccatattaaaatttctc 199  Q
    |||||||||||||| ||| ||| ||||||||| ||||||||||||    
T  34173559 accaaacactttttgtttagtcttgtgaccatgttaaaatttctc 34173603  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 155 - 199
Target Start/End: Original strand, 34514581 - 34514625
Alignment:
Q  155 accaaacactttttctttggtcctgtgaccatattaaaatttctc 199  Q
    |||||||||| ||| ||||||| |||||| |||||||||||||||    
T  34514581 accaaacactatttgtttggtcttgtgactatattaaaatttctc 34514625  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 155 - 202
Target Start/End: Original strand, 35179296 - 35179341
Alignment:
Q  155 accaaacactttttctttggtcctgtgaccatattaaaatttctcata 202  Q
    ||||||||||||||||||| |||  ||||||||||| |||||||||||    
T  35179296 accaaacactttttctttgatcc--tgaccatattagaatttctcata 35179341  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 76; Significance: 3e-35; HSPs: 20)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 16 - 123
Target Start/End: Original strand, 33758794 - 33758901
Alignment:
Q  16 tattcttccatggtcacaagaccaaatcaataatgtttgaatacacacataaaaagattctcctctaaatattcaatcatcatttttatcaatttcctct 115  Q
    ||||||||||||||||||||| |||||||||| |||||| | ||||||||||||||||||||||| || |||||||||||| |||||||||||||||| |    
T  33758794 tattcttccatggtcacaagatcaaatcaatactgtttggacacacacataaaaagattctcctcaaactattcaatcatcttttttatcaatttccttt 33758893  T
Q  116 ttattatt 123  Q
    ||||||||    
T  33758894 ttattatt 33758901  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 67; E-Value: 7e-30
Query Start/End: Original strand, 35 - 117
Target Start/End: Complemental strand, 23151518 - 23151436
Alignment:
Q  35 gaccaaatcaataatgtttgaatacacacataaaaagattctcctctaaatattcaatcatcatttttatcaatttcctcttt 117  Q
    |||||||||||||||||||| | ||||||||||||||||||||||| |||||||||||||||||||||||||||||| |||||    
T  23151518 gaccaaatcaataatgtttggacacacacataaaaagattctcctcaaaatattcaatcatcatttttatcaatttcttcttt 23151436  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 11 - 123
Target Start/End: Complemental strand, 2976556 - 2976446
Alignment:
Q  11 ggagatattcttccatggtcacaagaccaaatcaataatgtttgaatacacacataaaaagattctcctctaaatattcaatcatcatttttatcaattt 110  Q
    |||| |||||||||||||||| ||||||||||||||| |||||| |  |||||||||||||||  ||||  ||||||||||||||  |||||||||||||    
T  2976556 ggaggtattcttccatggtcataagaccaaatcaatagtgtttgga--cacacataaaaagatggtccttaaaatattcaatcattttttttatcaattt 2976459  T
Q  111 cctctttattatt 123  Q
    | |||||| ||||    
T  2976458 cttctttaatatt 2976446  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 25 - 123
Target Start/End: Original strand, 34849451 - 34849550
Alignment:
Q  25 atggtcacaagaccaaatcaataatgtttgaatacacacataaaaagattctcctctaaatattcaatcatc-atttttatcaatttcctctttattatt 123  Q
    ||||||| ||||| |||||||||||||||  | ||||| ||||||||||||||||| |||||||||||||||  ||||||||||||| ||| ||||||||    
T  34849451 atggtcataagacgaaatcaataatgtttcgacacacatataaaaagattctcctcaaaatattcaatcatctttttttatcaattttctccttattatt 34849550  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 26 - 123
Target Start/End: Original strand, 30319817 - 30319915
Alignment:
Q  26 tggtcacaagaccaaatcaataatgtttgaata--cacacataaaaagattctcctctaaatattcaatcatcatttttatcaatttcctctttattatt 123  Q
    ||||||||||||||||||||||||||||| |||  | |||||||||| |||||| |  ||||||||||||||| ||||||||||||||||| || |||||    
T  30319817 tggtcacaagaccaaatcaataatgtttggatacgcgcacataaaaa-attctctttaaaatattcaatcatcttttttatcaatttcctccttcttatt 30319915  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 16 - 123
Target Start/End: Complemental strand, 20524711 - 20524604
Alignment:
Q  16 tattcttccatggtcacaagaccaaatcaataatgtttgaatacacacataaaaagattctcctctaaatattcaatcatcatttttatcaatttcctct 115  Q
    |||||||||||| |||||| || ||||||||| |||||| | |||||||| |||||||  |  |  ||||||||||||||  ||||||||||||||||||    
T  20524711 tattcttccatgatcacaaaactaaatcaatactgtttggacacacacatcaaaagatgatgtttaaaatattcaatcattttttttatcaatttcctct 20524612  T
Q  116 ttattatt 123  Q
    ||||||||    
T  20524611 ttattatt 20524604  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 16 - 123
Target Start/End: Original strand, 10719746 - 10719854
Alignment:
Q  16 tattcttccatggtcacaagaccaaatcaataatgtttgaatacacacataaaaagattctcctctaaatattcaatca-tcatttttatcaatttcctc 114  Q
    |||||||||||||||| |||||||||| |||| |||||| | ||||||||||||| ||  ||||  ||||||||||||| |  ||||||||||||| |||    
T  10719746 tattcttccatggtcataagaccaaattaatagtgtttggacacacacataaaaaaatggtccttaaaatattcaatcatttttttttatcaattttctc 10719845  T
Q  115 tttattatt 123  Q
    |||| ||||    
T  10719846 tttactatt 10719854  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 36 - 123
Target Start/End: Complemental strand, 37872291 - 37872201
Alignment:
Q  36 accaaatcaataatgtttgaatacacaca--taaaaagattctcctctaaatattcaatcatc-atttttatcaatttcctctttattatt 123  Q
    |||||||||||||| |||| | |||||||  ||||||||||||| || |||||||||||||||  ||||||||||||||||| ||||||||    
T  37872291 accaaatcaataatatttggacacacacacataaaaagattctcatcaaaatattcaatcatctttttttatcaatttcctccttattatt 37872201  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 13 - 53
Target Start/End: Complemental strand, 37872342 - 37872302
Alignment:
Q  13 agatattcttccatggtcacaagaccaaatcaataatgttt 53  Q
    |||||||||||||||||||||||||||||||||||||||||    
T  37872342 agatattcttccatggtcacaagaccaaatcaataatgttt 37872302  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 9 - 121
Target Start/End: Original strand, 8026460 - 8026577
Alignment:
Q  9 aaggagatattcttccatggtcacaagaccaaatcaataatgtttgaa--tacacacataaaaagattctcctctaaatattcaatcatcatttt---ta 103  Q
    |||||| |||||||| || |||||||||||||||||||| |||||| |   | ||||||||||||||  || |  ||||||||||||||  ||||   ||    
T  8026460 aaggaggtattcttctatagtcacaagaccaaatcaatactgtttggacgcatacacataaaaagatggtctttaaaatattcaatcatttttttttata 8026559  T
Q  104 tcaatttcctctttatta 121  Q
    ||||||||||||||||||    
T  8026560 tcaatttcctctttatta 8026577  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 24 - 123
Target Start/End: Original strand, 3454259 - 3454358
Alignment:
Q  24 catggtcacaagaccaaatcaataatgtttgaatacacacataaaaagattctcctctaaatattcaatcatcatttttatcaatttcctctttattatt 123  Q
    |||||| |||||| |||||||||||| |||    ||| | ||| ||||||||| ||  ||||||||||||||| |||||||||||||| | |||||||||    
T  3454259 catggttacaagatcaaatcaataatatttagtcacaaatatataaagattcttcttaaaatattcaatcatcttttttatcaatttcttttttattatt 3454358  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 157 - 200
Target Start/End: Original strand, 36442660 - 36442703
Alignment:
Q  157 caaacactttttctttggtcctgtgaccatattaaaatttctca 200  Q
    |||||||||||| ||||||| |||||||||||||||||||||||    
T  36442660 caaacactttttatttggtcatgtgaccatattaaaatttctca 36442703  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 65 - 123
Target Start/End: Original strand, 42285218 - 42285277
Alignment:
Q  65 taaaaagattctcctctaaatattcaatca-tcatttttatcaatttcctctttattatt 123  Q
    |||||||||||||||| ||||||||||||| |  ||||||||||||||||| ||||||||    
T  42285218 taaaaagattctcctcaaaatattcaatcatttttttttatcaatttcctccttattatt 42285277  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 155 - 199
Target Start/End: Original strand, 10719883 - 10719927
Alignment:
Q  155 accaaacactttttctttggtcctgtgaccatattaaaatttctc 199  Q
    |||||||||||||| ||||||| |||||||||| |||||||||||    
T  10719883 accaaacactttttatttggtcatgtgaccataataaaatttctc 10719927  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 155 - 202
Target Start/End: Original strand, 3454387 - 3454434
Alignment:
Q  155 accaaacactttttctttggtcctgtgaccatattaaaatttctcata 202  Q
    |||||| |||||||| ||| || |||||||||||||||||||||||||    
T  3454387 accaaatactttttccttgatcatgtgaccatattaaaatttctcata 3454434  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 155 - 201
Target Start/End: Original strand, 16778273 - 16778319
Alignment:
Q  155 accaaacactttttctttggtcctgtgaccatattaaaatttctcat 201  Q
    ||||| |||||||| |||||||||||| |||||||| ||||||||||    
T  16778273 accaagcactttttatttggtcctgtggccatattagaatttctcat 16778319  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 156 - 198
Target Start/End: Complemental strand, 21239045 - 21239003
Alignment:
Q  156 ccaaacactttttctttggtcctgtgaccatattaaaatttct 198  Q
    ||||||||||||| ||||||| ||||||||||||| |||||||    
T  21239045 ccaaacactttttgtttggtcttgtgaccatattagaatttct 21239003  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 158 - 199
Target Start/End: Complemental strand, 20654502 - 20654461
Alignment:
Q  158 aaacactttttctttggtcctgtgaccatattaaaatttctc 199  Q
    ||||||||||| ||||||| ||||||||||||| ||||||||    
T  20654502 aaacactttttatttggtcatgtgaccatattagaatttctc 20654461  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 155 - 199
Target Start/End: Complemental strand, 23145973 - 23145929
Alignment:
Q  155 accaaacactttttctttggtcctgtgaccatattaaaatttctc 199  Q
    |||||| |||||||||||| |||| ||||||||||| ||||||||    
T  23145973 accaaatactttttctttgatcctatgaccatattagaatttctc 23145929  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 155 - 199
Target Start/End: Complemental strand, 37872173 - 37872129
Alignment:
Q  155 accaaacactttttctttggtcctgtgaccatattaaaatttctc 199  Q
    |||||| ||||||||||||||||| ||| ||||||| ||||||||    
T  37872173 accaaatactttttctttggtcctctgatcatattagaatttctc 37872129  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 71; Significance: 3e-32; HSPs: 16)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 16 - 123
Target Start/End: Original strand, 3870024 - 3870135
Alignment:
Q  16 tattcttccatggtcacaagaccaaatcaataatgtttgaatacacaca----taaaaagattctcctctaaatattcaatcatcatttttatcaatttc 111  Q
    ||||||||||||||||||||||||||||||||||||||  | |||||||    |||||||||||||||| ||||||||||||||| ||||||||||||||    
T  3870024 tattcttccatggtcacaagaccaaatcaataatgttttgacacacacagacataaaaagattctcctcaaaatattcaatcatcttttttatcaatttc 3870123  T
Q  112 ctctttattatt 123  Q
    ||| ||||||||    
T  3870124 ctccttattatt 3870135  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 69; E-Value: 5e-31
Query Start/End: Original strand, 16 - 123
Target Start/End: Original strand, 11028779 - 11028887
Alignment:
Q  16 tattcttccatggtcacaagaccaaatcaataatgtttgaatacacacataaaaagattctcctctaaatattcaatcatc-atttttatcaatttcctc 114  Q
    ||||||||||| |||| |||||||||||||||||||||| | ||||||||||||||||||||||  |||||||||||||||  |||||||||||||||||    
T  11028779 tattcttccatcgtcaaaagaccaaatcaataatgtttggacacacacataaaaagattctccttaaaatattcaatcatctttttttatcaatttcctc 11028878  T
Q  115 tttattatt 123  Q
     ||||||||    
T  11028879 cttattatt 11028887  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 69; E-Value: 5e-31
Query Start/End: Original strand, 16 - 109
Target Start/End: Original strand, 36400857 - 36400952
Alignment:
Q  16 tattcttccatggtcacaagaccaaatcaataatgtttgaatacac--acataaaaagattctcctctaaatattcaatcatcatttttatcaatt 109  Q
    ||||||||||||||| ||||||||||||||||||||||||| ||||  ||||||||||||||||||| ||||||||||||||| ||||||||||||    
T  36400857 tattcttccatggtctcaagaccaaatcaataatgtttgaacacacacacataaaaagattctcctcaaaatattcaatcatcttttttatcaatt 36400952  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 10 - 123
Target Start/End: Complemental strand, 28734183 - 28734070
Alignment:
Q  10 aggagatattcttccatggtcacaagaccaaatcaataatgtttgaatacacacataaaaagattctcctctaaatattcaatcatc-atttttatcaat 108  Q
    ||||| |||||||||| |||||||||||||||||||||||||||| | ||||||||||||| ||||||||| ||||| ||| |||||  |||||||||||    
T  28734183 aggaggtattcttccacggtcacaagaccaaatcaataatgtttggacacacacataaaaa-attctcctcaaaatactcactcatctttttttatcaat 28734085  T
Q  109 ttcctctttattatt 123  Q
    ||| |||||||||||    
T  28734084 ttcttctttattatt 28734070  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 16 - 123
Target Start/End: Original strand, 37721449 - 37721557
Alignment:
Q  16 tattcttccatggtcacaagaccaaatcaataatgtttgaatacacacataaaaagattctcctctaaatattcaatca-tcatttttatcaatttcctc 114  Q
    |||||||||||||||||||||||||||||||||| |||| | || | ||||||||||||||| || ||||||||||||| |  |||||||||||||||||    
T  37721449 tattcttccatggtcacaagaccaaatcaataatatttggacacgcgcataaaaagattctcttcaaaatattcaatcatttttttttatcaatttcctc 37721548  T
Q  115 tttattatt 123  Q
     ||||||||    
T  37721549 cttattatt 37721557  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 16 - 123
Target Start/End: Original strand, 38879517 - 38879625
Alignment:
Q  16 tattcttccatggtcacaagaccaaatcaataatgtttgaatacacacataaaaagattctcctctaaatattcaatcatc-atttttatcaatttcctc 114  Q
    ||||||||||| ||||||||||||||| ||||||||||| | ||||||||||||||||||||||| ||||||| |||||||  ||||||||||||| |||    
T  38879517 tattcttccatagtcacaagaccaaattaataatgtttggacacacacataaaaagattctcctcaaaatattaaatcatctttttttatcaattttctc 38879616  T
Q  115 tttattatt 123  Q
     | ||||||    
T  38879617 ctcattatt 38879625  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 16 - 123
Target Start/End: Original strand, 3647418 - 3647526
Alignment:
Q  16 tattcttccatggtcacaagaccaaatcaataatgtttgaatac--acacataaaaagattctcctctaaatattcaatcatcatttttatcaatttcct 113  Q
    ||||||||| ||||||||||||||||||||||||||||||| ||  ||||||||||| |||||| |  ||||||||||||||| ||||||||||||| ||    
T  3647418 tattcttccttggtcacaagaccaaatcaataatgtttgaacacgaacacataaaaa-attctctttaaaatattcaatcatcttttttatcaattttct 3647516  T
Q  114 ctttattatt 123  Q
    | || |||||    
T  3647517 ccttcttatt 3647526  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 155 - 199
Target Start/End: Original strand, 3870164 - 3870208
Alignment:
Q  155 accaaacactttttctttggtcctgtgaccatattaaaatttctc 199  Q
    |||||||||||||||||||||||||||||||||||| ||||||||    
T  3870164 accaaacactttttctttggtcctgtgaccatattagaatttctc 3870208  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 17 - 123
Target Start/End: Complemental strand, 30706258 - 30706149
Alignment:
Q  17 attcttccatggtcacaagaccaaatcaataatgtttgaatacacacataaaaagattctcctctaaatattcaatca-----tcatttttatcaatttc 111  Q
    |||||| |||||||||||||||||||||||| ||||||   ||||||||||||||||  ||||  |||||||||||||     |  ||||||||||||||    
T  30706258 attcttacatggtcacaagaccaaatcaatagtgtttg--gacacacataaaaagatggtccttaaaatattcaatcatttttttttttttatcaatttc 30706161  T
Q  112 ctctttattatt 123  Q
    ||||||| ||||    
T  30706160 ctctttactatt 30706149  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 155 - 199
Target Start/End: Complemental strand, 34480099 - 34480055
Alignment:
Q  155 accaaacactttttctttggtcctgtgaccatattaaaatttctc 199  Q
    |||||||||||||||||||||||||||||||||||| ||||||||    
T  34480099 accaaacactttttctttggtcctgtgaccatattagaatttctc 34480055  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 16 - 123
Target Start/End: Complemental strand, 6512191 - 6512079
Alignment:
Q  16 tattcttccatggtcacaagaccaaatcaataatgtttg--aatacacacataaaaagattctcctct-aaatattcaatca---tcatttttatcaatt 109  Q
    |||| ||||||||||||||||||||||||||| ||||||   | ||||||||||||||| |   |||| |||||||||||||   |  ||||||||||||    
T  6512191 tattattccatggtcacaagaccaaatcaatagtgtttggacacacacacataaaaaga-tgaactctaaaatattcaatcatttttttttttatcaatt 6512093  T
Q  110 tcctctttattatt 123  Q
    ||||||||||||||    
T  6512092 tcctctttattatt 6512079  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 156 - 199
Target Start/End: Original strand, 36400993 - 36401036
Alignment:
Q  156 ccaaacactttttctttggtcctgtgaccatattaaaatttctc 199  Q
    ||||||||||||||||| ||||||||||||||||| ||||||||    
T  36400993 ccaaacactttttctttagtcctgtgaccatattagaatttctc 36401036  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 62 - 123
Target Start/End: Complemental strand, 3949378 - 3949317
Alignment:
Q  62 acataaaaagattctcctctaaatattcaatcatcatttttatcaatttcctctttattatt 123  Q
    |||||||||  |||||||| ||||||||||||||  |||||||||||||| | |||||||||    
T  3949378 acataaaaaatttctcctcaaaatattcaatcattttttttatcaatttcttttttattatt 3949317  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 155 - 199
Target Start/End: Complemental strand, 30706122 - 30706078
Alignment:
Q  155 accaaacactttttctttggtcctgtgaccatattaaaatttctc 199  Q
    |||||||||||||| |||| || ||||||||||||||||||||||    
T  30706122 accaaacactttttatttgatcatgtgaccatattaaaatttctc 30706078  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 155 - 200
Target Start/End: Original strand, 37721585 - 37721630
Alignment:
Q  155 accaaacactttttctttggtcctgtgaccatattaaaatttctca 200  Q
    |||||||||||||||||| |||  |||||||||||| |||||||||    
T  37721585 accaaacactttttctttagtctcgtgaccatattagaatttctca 37721630  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 155 - 199
Target Start/End: Original strand, 9009119 - 9009163
Alignment:
Q  155 accaaacactttttctttggtcctgtgaccatattaaaatttctc 199  Q
    |||||||||| ||| ||||||| ||||||||||||| ||||||||    
T  9009119 accaaacactatttgtttggtcttgtgaccatattagaatttctc 9009163  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0095 (Bit Score: 68; Significance: 2e-30; HSPs: 2)
Name: scaffold0095
Description:

Target: scaffold0095; HSP #1
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 12 - 111
Target Start/End: Original strand, 35362 - 35464
Alignment:
Q  12 gagatattcttccatggtcacaagaccaaatcaataatgtttga--atacacacataaaaagattctcctctaaatattcaatcatc-atttttatcaat 108  Q
    |||||||||||||||||||||||||||||||||||||| |||||  ||||| ||||||||||||||||||| |||||||||||||||  |||||||||||    
T  35362 gagatattcttccatggtcacaagaccaaatcaataatatttgaacatacatacataaaaagattctcctcaaaatattcaatcatctttttttatcaat 35461  T
Q  109 ttc 111  Q
    |||    
T  35462 ttc 35464  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0095; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 155 - 199
Target Start/End: Original strand, 35503 - 35547
Alignment:
Q  155 accaaacactttttctttggtcctgtgaccatattaaaatttctc 199  Q
    ||||||||||||||||||| || |||||| |||||||||||||||    
T  35503 accaaacactttttctttgatcatgtgacgatattaaaatttctc 35547  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 61; Significance: 3e-26; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 16 - 123
Target Start/End: Complemental strand, 2141348 - 2141240
Alignment:
Q  16 tattcttccatggtcacaagaccaaatcaataatgtttgaatacacacataaaaagattctcctctaaatattcaatcatc-atttttatcaatttcctc 114  Q
    ||||||||||||||||||||| || |||||||| ||||| | || |||||||||||||| | ||| ||||||||||||||| ||||||||||||||||||    
T  2141348 tattcttccatggtcacaagatcatatcaataacgtttggacacccacataaaaagatttttctcaaaatattcaatcatctatttttatcaatttcctc 2141249  T
Q  115 tttattatt 123  Q
     ||||||||    
T  2141248 attattatt 2141240  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 11 - 123
Target Start/End: Original strand, 7080148 - 7080262
Alignment:
Q  11 ggagatattcttccatggtcacaagaccaaatcaataatgtttgaatacac--acataaaaagattctcctctaaatattcaatcatcatttttatcaat 108  Q
    |||| |||||||| ||||||||| |||||||||||||||||||| | ||||  |||||||||||||||| || ||||||||||| ||| |||||||||||    
T  7080148 ggaggtattcttctatggtcacatgaccaaatcaataatgtttggacacacacacataaaaagattctcttcaaaatattcaataatcttttttatcaat 7080247  T
Q  109 ttcctctttattatt 123  Q
    ||| |||||| ||||    
T  7080248 ttcgtctttaatatt 7080262  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 16 - 110
Target Start/End: Complemental strand, 25337023 - 25336928
Alignment:
Q  16 tattcttccatggtcacaagaccaaatcaataatgtttgaata--cacacataaaaagattctcctctaaatattcaatcatcatttttatcaattt 110  Q
    ||||||||| ||||||||||| ||||||||||||||||| | |  |||||||||||| |||||| |  ||||||||||||||| |||||||||||||    
T  25337023 tattcttccttggtcacaagatcaaatcaataatgtttggacacgcacacataaaaa-attctctttaaaatattcaatcatcttttttatcaattt 25336928  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 157 - 197
Target Start/End: Complemental strand, 17852690 - 17852650
Alignment:
Q  157 caaacactttttctttggtcctgtgaccatattaaaatttc 197  Q
    |||||||||||||||| || |||||||||||||||||||||    
T  17852690 caaacactttttctttcgttctgtgaccatattaaaatttc 17852650  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0288 (Bit Score: 52; Significance: 6e-21; HSPs: 2)
Name: scaffold0288
Description:

Target: scaffold0288; HSP #1
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 16 - 95
Target Start/End: Complemental strand, 18163 - 18084
Alignment:
Q  16 tattcttccatggtcacaagaccaaatcaataatgtttgaatacacacataaaaagattctcctctaaatattcaatcat 95  Q
    |||||||||||||| |||||| | ||||||||||||||||| ||||| | ||||||||||||||| ||||||||||||||    
T  18163 tattcttccatggttacaagatccaatcaataatgtttgaacacacatagaaaaagattctcctcaaaatattcaatcat 18084  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0288; HSP #2
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 155 - 199
Target Start/End: Complemental strand, 18022 - 17977
Alignment:
Q  155 accaaacacttttt-ctttggtcctgtgaccatattaaaatttctc 199  Q
    |||||||||||||| ||||||||| |||||||||||| ||||||||    
T  18022 accaaacacttttttctttggtcccgtgaccatattagaatttctc 17977  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0009 (Bit Score: 52; Significance: 6e-21; HSPs: 1)
Name: scaffold0009
Description:

Target: scaffold0009; HSP #1
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 8 - 95
Target Start/End: Original strand, 25680 - 25767
Alignment:
Q  8 taaggagatattcttccatggtcacaagaccaaatcaataatgtttgaatacacacataaaaagattctcctctaaatattcaatcat 95  Q
    ||||||| |||||||||||| |||| ||||||||||||||||||||| | |||||| |||||||||| || || ||||||||||||||    
T  25680 taaggaggtattcttccatgatcacgagaccaaatcaataatgtttggacacacacgtaaaaagattttcatcaaaatattcaatcat 25767  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1339 (Bit Score: 47; Significance: 6e-18; HSPs: 1)
Name: scaffold1339
Description:

Target: scaffold1339; HSP #1
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 16 - 123
Target Start/End: Complemental strand, 165 - 57
Alignment:
Q  16 tattcttccatggtcacaagaccaaatcaataatgtttgaatacac--acataaaaagattctcctctaaatattcaatcatcatttttatcaatttcct 113  Q
    |||||||||||| ||||||||||||||||||| |||||| | ||||  ||||||||||||  || |  ||||||||||||||  |||||||||||||| |    
T  165 tattcttccatgatcacaagaccaaatcaatagtgtttggacacacatacataaaaagatagtcttaaaaatattcaatcat-ttttttatcaatttcat 67  T
Q  114 ctttattatt 123  Q
    ||||||||||    
T  66 ctttattatt 57  T

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