View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF20654_low_33 (Length: 250)
Name: NF20654_low_33
Description: NF20654
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20654_low_33 |
 | |
|
| [»] scaffold0586 (2 HSPs) |
| | |
|
Alignment Details
Target: chr8 (Bit Score: 196; Significance: 1e-107; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 196; E-Value: 1e-107
Query Start/End: Original strand, 1 - 237
Target Start/End: Complemental strand, 10637833 - 10637597
Alignment:
| Q |
1 |
aattcatttagtaacaaagcaataagcaacatcagaagacnnnnnnncagagaaatgatataaatcaccaaatctatgttgagtaatggaagaattaaaa |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
10637833 |
aattcatttagtaacaaagcaataagcaacatcagaagacaaaaaaacagagaaatgatataaatcaccaaatctatgttgagtaatggaagaattaaaa |
10637734 |
T |
|
| Q |
101 |
tgaaattagatggtaccttgaagagaagagtgaaatccaaaactcaaacagcaagtagttgatgaacactataaagatcatgtgtttcttttttatagaa |
200 |
Q |
| |
|
|||||||||||| |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |||||| ||| ||||||||||||||||| |
|
|
| T |
10637733 |
tgaaattagatgataccttgaagagaagagtgaaatccaaaactcaaacagcaagcagttgatgaacactacaaagataatgggtttcttttttatagaa |
10637634 |
T |
|
| Q |
201 |
gatcatgggtgaaaaaattagcgggaatagcagagaa |
237 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| |
|
|
| T |
10637633 |
gatcatgggtgaaaaaattagcgggaatagcagagaa |
10637597 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 196; E-Value: 1e-107
Query Start/End: Original strand, 1 - 237
Target Start/End: Original strand, 32717761 - 32717997
Alignment:
| Q |
1 |
aattcatttagtaacaaagcaataagcaacatcagaagacnnnnnnncagagaaatgatataaatcaccaaatctatgttgagtaatggaagaattaaaa |
100 |
Q |
| |
|
||||||||||| |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
32717761 |
aattcatttagcaacaaagcaataagcaacatcagaagacaaaaaaacagagaaatgatataaatcaccaaatctatgttgagtaatggaagaattaaaa |
32717860 |
T |
|
| Q |
101 |
tgaaattagatggtaccttgaagagaagagtgaaatccaaaactcaaacagcaagtagttgatgaacactataaagatcatgtgtttcttttttatagaa |
200 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |||||| ||| ||||||||||||||||| |
|
|
| T |
32717861 |
tgaaattagatggtaccttgaagagaagagtgaaatccaaaactcaaacagcaagcagttgatgaacactacaaagataatgggtttcttttttatagaa |
32717960 |
T |
|
| Q |
201 |
gatcatgggtgaaaaaattagcgggaatagcagagaa |
237 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| |
|
|
| T |
32717961 |
gatcatgggtgaaaaaattagcgggaatagcagagaa |
32717997 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 183; Significance: 4e-99; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 183; E-Value: 4e-99
Query Start/End: Original strand, 1 - 237
Target Start/End: Complemental strand, 22893992 - 22893752
Alignment:
| Q |
1 |
aattcatttagtaacaaagcaataagcaacatcagaagacnnnnnnn----cagagaaatgatataaatcaccaaatctatgttgagtaatggaagaatt |
96 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
22893992 |
aattcatttagtaacaaagcaataagcaacatcagaagacaaaaaaaaaaacagagaaatgatataaatcaccaaatctatgttgagtaatggaagaatt |
22893893 |
T |
|
| Q |
97 |
aaaatgaaattagatggtaccttgaagagaagagtgaaatccaaaactcaaacagcaagtagttgatgaacactataaagatcatgtgtttcttttttat |
196 |
Q |
| |
|
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |||||||||| ||||| ||||||| |
|
|
| T |
22893892 |
aaaatgaaattagatgttaccttgaagagaagagtgaaatccaaaactcaaacagcaagcagttgatgaacactacaaagatcatgggtttcctttttat |
22893793 |
T |
|
| Q |
197 |
agaagatcatgggtgaaaaaattagcgggaatagcagagaa |
237 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
22893792 |
agaagatcatgggtgaaaaaattagcgggaatagcagagaa |
22893752 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 54 - 187
Target Start/End: Complemental strand, 44306261 - 44306129
Alignment:
| Q |
54 |
aatgatataaatcaccaaatctatgttgagtaatggaagaattaaaatgaaattagatggtaccttgaagagaagagtgaaatccaaaactcaaacagca |
153 |
Q |
| |
|
|||||||| ||| |||||||||||||||||||||||||||||| ||| ||| || ||||||||||||||||||||||||||||||| ||| ||| |||| |
|
|
| T |
44306261 |
aatgatatcaatgaccaaatctatgttgagtaatggaagaattgaaaagaattt-gatggtaccttgaagagaagagtgaaatccagaaccaaaatagca |
44306163 |
T |
|
| Q |
154 |
agtagttgatgaacactataaagatcatgtgttt |
187 |
Q |
| |
|
|| ||||||||||||| | |||||| ||| |||| |
|
|
| T |
44306162 |
agcagttgatgaacaccacaaagatgatgggttt |
44306129 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0586 (Bit Score: 145; Significance: 2e-76; HSPs: 2)
Name: scaffold0586
Description:
Target: scaffold0586; HSP #1
Raw Score: 145; E-Value: 2e-76
Query Start/End: Original strand, 1 - 182
Target Start/End: Complemental strand, 9778 - 9597
Alignment:
| Q |
1 |
aattcatttagtaacaaagcaataagcaacatcagaagacnnnnnnncagagaaatgatataaatcaccaaatctatgttgagtaatggaagaattaaaa |
100 |
Q |
| |
|
|||||||| ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
9778 |
aattcattaagtaacaaagcaataagcaacatcagaagacaaaaaaacagagaaatgatataaatcaccaaatctatgttgagtaatggaagaattaaaa |
9679 |
T |
|
| Q |
101 |
tgaaattagatggtaccttgaagagaagagtgaaatccaaaactcaaacagcaagtagttgatgaacactataaagatcatg |
182 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||| |||| ||||||||||||||| |||||||||| |
|
|
| T |
9678 |
tgaaattagatggtaccttgaagagaagagtgaaatccaaaactcaaacaacaagcagttgatgaacactacaaagatcatg |
9597 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0586; HSP #2
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 199 - 237
Target Start/End: Complemental strand, 9605 - 9567
Alignment:
| Q |
199 |
aagatcatgggtgaaaaaattagcgggaatagcagagaa |
237 |
Q |
| |
|
||||||||||||||||||||||||||||||| ||||||| |
|
|
| T |
9605 |
aagatcatgggtgaaaaaattagcgggaataacagagaa |
9567 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 126; Significance: 4e-65; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 126; E-Value: 4e-65
Query Start/End: Original strand, 1 - 182
Target Start/End: Complemental strand, 19701350 - 19701164
Alignment:
| Q |
1 |
aattcatttagtaacaaagcaataagcaacatcagaagacnnnnnnn-----cagagaaatgatataaatcaccaaatctatgttgagtaatggaagaat |
95 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||||||||||| |
|
|
| T |
19701350 |
aattcatttagtaacaaagcaataagcaacatcagaagacaaaaaaaaaaatcagagaaatgatataaatcaacaaatctatgttgagtaatggaagaat |
19701251 |
T |
|
| Q |
96 |
taaaatgaaattagatggtaccttgaagagaagagtgaaatccaaaactcaaacagcaagtagttgatgaacactataaagatcatg |
182 |
Q |
| |
|
|||||||||||||||||||||||||||||||| |||||||||||||||||||| |||||| ||||||||||||||| |||||||||| |
|
|
| T |
19701250 |
taaaatgaaattagatggtaccttgaagagaaaagtgaaatccaaaactcaaatagcaagcagttgatgaacactacaaagatcatg |
19701164 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 89; E-Value: 5e-43
Query Start/End: Original strand, 48 - 215
Target Start/End: Complemental strand, 21481564 - 21481397
Alignment:
| Q |
48 |
cagagaaatgatataaatcaccaaatctatgttgagtaatggaagaattaaaatgaaattagatggtaccttgaagagaagagtgaaatccaaaactcaa |
147 |
Q |
| |
|
||||||| |||||| ||||||||||||||||||||||||||||||||||| ||||||||||||| ||||||||| |||||||||||||| ||||| ||| |
|
|
| T |
21481564 |
cagagaattgatatcaatcaccaaatctatgttgagtaatggaagaattatgatgaaattagatgttaccttgaatagaagagtgaaatcaaaaacccaa |
21481465 |
T |
|
| Q |
148 |
acagcaagtagttgatgaacactataaagatcatgtgtttcttttt-tatagaagatcatgggtgaaaa |
215 |
Q |
| |
|
|||||||||||||| |||| | |||||||||| |||||||||| || |||| |||||||||||||| |
|
|
| T |
21481464 |
ttggcaagtagttgatgcacac-acaaagatcatgggtttctttttatacagaatatcatgggtgaaaa |
21481397 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 199 - 237
Target Start/End: Complemental strand, 19701172 - 19701134
Alignment:
| Q |
199 |
aagatcatgggtgaaaaaattagcgggaatagcagagaa |
237 |
Q |
| |
|
||||||||||||||||||||||| ||||||||||||||| |
|
|
| T |
19701172 |
aagatcatgggtgaaaaaattagtgggaatagcagagaa |
19701134 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 94; Significance: 5e-46; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 94; E-Value: 5e-46
Query Start/End: Original strand, 63 - 215
Target Start/End: Original strand, 13331532 - 13331684
Alignment:
| Q |
63 |
aatcaccaaatctatgttgagtaatggaagaattaaaatgaaattagatggtaccttgaagagaagagtgaaatccaaaactcaaacagcaagtagttga |
162 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| | || ||||||||||||||||||||||||||||||||||| ||||||||| ||||||| |||||| |
|
|
| T |
13331532 |
aatcaccaaatctatgttgagtaatggaagaattgagataaaattagatggtaccttgaagagaagagtgaaatcaaaaactcaatcagcaagcagttga |
13331631 |
T |
|
| Q |
163 |
tgaacactataaagatcatgtgtt-tcttttttatagaagatcatgggtgaaaa |
215 |
Q |
| |
|
||||||| | |||||||||| ||| |||||| ||||||| | |||||||||||| |
|
|
| T |
13331632 |
tgaacac-acaaagatcatgggttatcttttatatagaaaaacatgggtgaaaa |
13331684 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 94; E-Value: 5e-46
Query Start/End: Original strand, 63 - 215
Target Start/End: Original strand, 13342447 - 13342599
Alignment:
| Q |
63 |
aatcaccaaatctatgttgagtaatggaagaattaaaatgaaattagatggtaccttgaagagaagagtgaaatccaaaactcaaacagcaagtagttga |
162 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| | || ||||||||||||||||||||||||||||||||||| ||||||||| ||||||| |||||| |
|
|
| T |
13342447 |
aatcaccaaatctatgttgagtaatggaagaattgagataaaattagatggtaccttgaagagaagagtgaaatcaaaaactcaatcagcaagcagttga |
13342546 |
T |
|
| Q |
163 |
tgaacactataaagatcatgtgtt-tcttttttatagaagatcatgggtgaaaa |
215 |
Q |
| |
|
||||||| | |||||||||| ||| |||||| ||||||| | |||||||||||| |
|
|
| T |
13342547 |
tgaacac-acaaagatcatgggttatcttttatatagaaaaacatgggtgaaaa |
13342599 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 54 - 169
Target Start/End: Original strand, 33430221 - 33430337
Alignment:
| Q |
54 |
aatgatataaatcaccaaatctatgttgagtaatggaagaattaaaatgaaa-ttagatggtaccttgaagagaagagtgaaatccaaaactcaaacagc |
152 |
Q |
| |
|
|||||| | ||||| |||||||| |||||||||||||| ||||||| ||| |||||||||||||||||||||| |||||||| ||||| |||| ||| |
|
|
| T |
33430221 |
aatgatgtcaatcatcaaatctacgttgagtaatggaacgattaaaaaaaaaattagatggtaccttgaagagaatagtgaaattcaaaatccaaatagc |
33430320 |
T |
|
| Q |
153 |
aagtagttgatgaacac |
169 |
Q |
| |
|
|| | ||||||||||| |
|
|
| T |
33430321 |
aaacacttgatgaacac |
33430337 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 94; Significance: 5e-46; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 94; E-Value: 5e-46
Query Start/End: Original strand, 63 - 215
Target Start/End: Original strand, 5672003 - 5672155
Alignment:
| Q |
63 |
aatcaccaaatctatgttgagtaatggaagaattaaaatgaaattagatggtaccttgaagagaagagtgaaatccaaaactcaaacagcaagtagttga |
162 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| | || ||||||||||||||||||||||||||||||||||| ||||||||| ||||||| |||||| |
|
|
| T |
5672003 |
aatcaccaaatctatgttgagtaatggaagaattgagataaaattagatggtaccttgaagagaagagtgaaatcaaaaactcaatcagcaagcagttga |
5672102 |
T |
|
| Q |
163 |
tgaacactataaagatcatgtgtt-tcttttttatagaagatcatgggtgaaaa |
215 |
Q |
| |
|
||||||| | |||||||||| ||| |||||| ||||||| | |||||||||||| |
|
|
| T |
5672103 |
tgaacac-acaaagatcatgggttatcttttatatagaaaaacatgggtgaaaa |
5672155 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 85; Significance: 1e-40; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 48 - 215
Target Start/End: Complemental strand, 26661646 - 26661479
Alignment:
| Q |
48 |
cagagaaatgatataaatcaccaaatctatgttgagtaatggaagaattaaaatgaaattagatggtaccttgaagagaagagtgaaatccaaaactcaa |
147 |
Q |
| |
|
||||||| |||||| ||||||||||||||||||||||||||||||||||| ||||||||||||| ||||||||| |||||||||||||| ||||| ||| |
|
|
| T |
26661646 |
cagagaattgatatcaatcaccaaatctatgttgagtaatggaagaattatgatgaaattagatgataccttgaacagaagagtgaaatcaaaaacccaa |
26661547 |
T |
|
| Q |
148 |
acagcaagtagttgatgaacactataaagatcatgtgtttcttttt-tatagaagatcatgggtgaaaa |
215 |
Q |
| |
|
||||| |||||||| |||| | |||||||||| |||||||||| || |||| |||||||||||||| |
|
|
| T |
26661546 |
ttggcaagcagttgatgcacac-acaaagatcatgggtttctttttatacagaatatcatgggtgaaaa |
26661479 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 82; E-Value: 8e-39
Query Start/End: Original strand, 54 - 187
Target Start/End: Complemental strand, 6050045 - 6049912
Alignment:
| Q |
54 |
aatgatataaatcaccaaatctatgttgagtaatggaagaattaaaatgaaattagatggtaccttgaagagaagagtgaaatccaaaactcaaacagca |
153 |
Q |
| |
|
|||||||| |||||||||||||||||||||||||||||||||| ||| |||||| ||||||||||||||||||||||||||||||| ||| ||| |||| |
|
|
| T |
6050045 |
aatgatatcaatcaccaaatctatgttgagtaatggaagaattgaaaagaaatttgatggtaccttgaagagaagagtgaaatccagaaccaaaatagca |
6049946 |
T |
|
| Q |
154 |
agtagttgatgaacactataaagatcatgtgttt |
187 |
Q |
| |
|
|| ||||||||||||| | |||||| ||| |||| |
|
|
| T |
6049945 |
agcagttgatgaacaccacaaagatgatgggttt |
6049912 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 76; Significance: 3e-35; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 54 - 169
Target Start/End: Original strand, 13893695 - 13893810
Alignment:
| Q |
54 |
aatgatataaatcaccaaatctatgttgagtaatggaagaattaaaatgaaattagatggtaccttgaagagaagagtgaaatccaaaactcaaacagca |
153 |
Q |
| |
|
|||||||| |||||||||||||||||||||||||||||||||| ||| |||||| ||||||||||||||||||||||||||||||| ||| ||| | || |
|
|
| T |
13893695 |
aatgatatcaatcaccaaatctatgttgagtaatggaagaattgaaaagaaatttgatggtaccttgaagagaagagtgaaatccagaaccaaaataaca |
13893794 |
T |
|
| Q |
154 |
agtagttgatgaacac |
169 |
Q |
| |
|
|| ||||||||||||| |
|
|
| T |
13893795 |
agcagttgatgaacac |
13893810 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 59; Significance: 4e-25; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 63 - 215
Target Start/End: Original strand, 15761974 - 15762126
Alignment:
| Q |
63 |
aatcaccaaatctatgttgagtaatggaagaattaaaatgaaattagatggtaccttgaagagaagagtgaaatccaaaactcaaa-cagcaagtagttg |
161 |
Q |
| |
|
||||||||||||||||||||||||| |||||||| | ||||||||||||||||| ||||| |||| |||||||| |||||| |||| ||||| |||||| |
|
|
| T |
15761974 |
aatcaccaaatctatgttgagtaatagaagaattgagatgaaattagatggtactttgaaaagaatagtgaaat-caaaacccaaattagcaaatagttg |
15762072 |
T |
|
| Q |
162 |
atgaacactataaagatcatgtg-tttcttttttatagaagatcatgggtgaaaa |
215 |
Q |
| |
|
||||||| || ||||||||| || | | |||| ||||||||| |||| ||||||| |
|
|
| T |
15762073 |
atgaaca-tacaaagatcatatgatgttttttatatagaagaacatgagtgaaaa |
15762126 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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