View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20654_low_35 (Length: 246)
Name: NF20654_low_35
Description: NF20654
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20654_low_35 |
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| [»] chr3 (2 HSPs) |
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| [»] scaffold0024 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 215; Significance: 1e-118; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 215; E-Value: 1e-118
Query Start/End: Original strand, 16 - 246
Target Start/End: Complemental strand, 28775308 - 28775078
Alignment:
| Q |
16 |
tcttttacaagaccattcaaattacttgattaacgtacaacgagaagaccattcaaattactcgactaacatacaacaatgccgaccaagacttattcca |
115 |
Q |
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| T |
28775308 |
tcttttacaagaccattcaaattacttgattaacgtacaacgagaagaccattcaaattacttgactaacatacaacaatgccgaccaagacttattcca |
28775209 |
T |
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| Q |
116 |
ttaagtggggttggctatagatattcgacaaagttatatgttgtctttcgaggactaacacaatctctccttttacccggacttgagattggataaaaaa |
215 |
Q |
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| T |
28775208 |
ttaagtggggttggctatagatattcgacaaagttatatgttgtctgtcgaggactaacacaatctctccttttacccagacttgagactggataaaaaa |
28775109 |
T |
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| Q |
216 |
gaaaacactttgatatagattgtcgaggtgg |
246 |
Q |
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| T |
28775108 |
gaaaacactttgatatagattgtcgaggtgg |
28775078 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 132 - 200
Target Start/End: Original strand, 51450772 - 51450841
Alignment:
| Q |
132 |
atagatattcgacaaagttatatgttgtctttcgaggactaacacaa-tctctccttttacccggacttg |
200 |
Q |
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| T |
51450772 |
atagatattcgacaaagttttacgttggctgtcgaggcctaacacaaccctctccttttacccgggcttg |
51450841 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 33; Significance: 0.000000001; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 132 - 203
Target Start/End: Complemental strand, 32079394 - 32079322
Alignment:
| Q |
132 |
atagatattcgacaaagttatatgttgtctttcgaggactaacacaa-tctctccttttacccggacttgaga |
203 |
Q |
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| T |
32079394 |
atagagattcgacaaagttttacgttggctgtcgaggcctaacacaaccctctccttttacccgggcttgaga |
32079322 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 132 - 200
Target Start/End: Complemental strand, 4001935 - 4001866
Alignment:
| Q |
132 |
atagatattcgacaaagttatatgttgtctttcgaggactaacacaa-tctctccttttacccggacttg |
200 |
Q |
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| T |
4001935 |
atagagattcgacaaagttttacgttggctgtcgaggcctaacacaaccctctccttttacccgggcttg |
4001866 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 132 - 200
Target Start/End: Complemental strand, 52921068 - 52920999
Alignment:
| Q |
132 |
atagatattcgacaaagttatatgttgtctttcgaggactaacacaa-tctctccttttacccggacttg |
200 |
Q |
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| T |
52921068 |
atagagattcgacaaagttttatgttggctgtcaaggcctaacacaaccctctccttttacccgggcttg |
52920999 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0024 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: scaffold0024
Description:
Target: scaffold0024; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 132 - 200
Target Start/End: Original strand, 48265 - 48334
Alignment:
| Q |
132 |
atagatattcgacaaagttatatgttgtctttcgaggactaac-acaatctctccttttacccggacttg |
200 |
Q |
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| T |
48265 |
atagagattcgataaagttatatgttggctgtcgaggcctaacgaaaccctctccttttacccggacttg |
48334 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 132 - 200
Target Start/End: Original strand, 39668787 - 39668856
Alignment:
| Q |
132 |
atagatattcgacaaagttatatgttgtctttcgaggactaacacaa-tctctccttttacccggacttg |
200 |
Q |
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| T |
39668787 |
atagagattcgacaaagttttacgttggctgtcgaggactaacacaaccctcaccttttacccgggcttg |
39668856 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 30; Significance: 0.00000008; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 132 - 200
Target Start/End: Complemental strand, 1648097 - 1648028
Alignment:
| Q |
132 |
atagatattcgacaaagttatatgttgtctttcgaggactaacacaa-tctctccttttacccggacttg |
200 |
Q |
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| T |
1648097 |
atagagattcgacaaagttttacgttggctgtcgaggcctaacacaaccctctccttttacccgggcttg |
1648028 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 132 - 200
Target Start/End: Complemental strand, 11992996 - 11992927
Alignment:
| Q |
132 |
atagatattcgacaaagttatatgttgtctttcgaggactaacacaa-tctctccttttacccggacttg |
200 |
Q |
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| T |
11992996 |
atagagattcgacaaagttttatgttggctgtcgaggcctaacacaaccctcttcttttacccgggcttg |
11992927 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 132 - 200
Target Start/End: Complemental strand, 37520680 - 37520611
Alignment:
| Q |
132 |
atagatattcgacaaagttatatgttgtctttcgaggactaacacaa-tctctccttttacccggacttg |
200 |
Q |
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| T |
37520680 |
atagagattcgacaaagttttacgttggctgtcgaggcctaacacaaccctctccttttacccgggcttg |
37520611 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 100 - 136
Target Start/End: Complemental strand, 6467400 - 6467364
Alignment:
| Q |
100 |
accaagacttattccattaagtggggttggctataga |
136 |
Q |
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| T |
6467400 |
accaagtcttatcccattaagtggggttggctataga |
6467364 |
T |
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