View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20654_low_36 (Length: 243)

Name: NF20654_low_36
Description: NF20654
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20654_low_36
NF20654_low_36
[»] chr2 (11 HSPs)
chr2 (1-212)||(3965339-3965559)
chr2 (57-139)||(44949254-44949336)
chr2 (57-139)||(1852867-1852949)
chr2 (57-118)||(3272361-3272422)
chr2 (57-133)||(35316186-35316262)
chr2 (90-134)||(42088508-42088552)
chr2 (57-108)||(31663599-31663650)
chr2 (70-134)||(6508381-6508445)
chr2 (51-119)||(12204685-12204753)
chr2 (60-104)||(18576861-18576905)
chr2 (70-122)||(20150444-20150496)
[»] chr7 (9 HSPs)
chr7 (58-139)||(28024546-28024626)
chr7 (57-134)||(49119564-49119641)
chr7 (57-117)||(12101378-12101438)
chr7 (57-115)||(48331492-48331550)
chr7 (57-106)||(35116925-35116974)
chr7 (59-128)||(38140331-38140400)
chr7 (57-134)||(1506603-1506682)
chr7 (57-109)||(30424906-30424958)
chr7 (52-116)||(36586822-36586886)
[»] chr6 (7 HSPs)
chr6 (55-134)||(30775248-30775327)
chr6 (57-119)||(6067506-6067568)
chr6 (70-108)||(32053890-32053928)
chr6 (52-119)||(31597512-31597580)
chr6 (57-112)||(30326734-30326789)
chr6 (80-125)||(3444946-3444992)
chr6 (59-117)||(29791054-29791111)
[»] chr4 (10 HSPs)
chr4 (57-116)||(3775396-3775455)
chr4 (57-127)||(21240171-21240241)
chr4 (65-128)||(24943556-24943619)
chr4 (54-140)||(50890688-50890775)
chr4 (57-128)||(26009675-26009746)
chr4 (57-116)||(44369062-44369121)
chr4 (57-116)||(54639678-54639737)
chr4 (59-109)||(4068367-4068417)
chr4 (57-109)||(48051737-48051789)
chr4 (54-134)||(50620648-50620728)
[»] chr3 (7 HSPs)
chr3 (59-106)||(29577269-29577316)
chr3 (59-116)||(50173415-50173472)
chr3 (57-140)||(25985403-25985486)
chr3 (65-117)||(38364493-38364545)
chr3 (57-119)||(31596300-31596362)
chr3 (50-111)||(44765166-44765227)
chr3 (57-105)||(30076546-30076594)
[»] chr5 (5 HSPs)
chr5 (57-139)||(41807223-41807304)
chr5 (59-128)||(950650-950719)
chr5 (57-117)||(9764994-9765054)
chr5 (54-166)||(34903329-34903443)
chr5 (71-128)||(2249248-2249305)
[»] chr8 (6 HSPs)
chr8 (57-119)||(7859116-7859178)
chr8 (48-116)||(44812760-44812828)
chr8 (61-116)||(41235827-41235882)
chr8 (59-109)||(31219192-31219242)
chr8 (58-122)||(35471566-35471630)
chr8 (54-106)||(42350452-42350504)
[»] chr1 (7 HSPs)
chr1 (57-116)||(17630315-17630374)
chr1 (57-116)||(52698489-52698548)
chr1 (78-134)||(32003051-32003107)
chr1 (57-119)||(44529310-44529372)
chr1 (57-115)||(52328051-52328109)
chr1 (77-118)||(44397645-44397686)
chr1 (79-139)||(44698064-44698124)


Alignment Details
Target: chr2 (Bit Score: 149; Significance: 8e-79; HSPs: 11)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 149; E-Value: 8e-79
Query Start/End: Original strand, 1 - 212
Target Start/End: Original strand, 3965339 - 3965559
Alignment:
Q  1 ttaatattgcatctttttctctttgtgcattattataaaatgggtcatgctaacaattgttaaggatttaaaaaagaaaacaattgctaaattttatgta 100  Q
    |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  3965339 ttaatattacatctttttctctttgtgcattattataaaatgggtcatgctaacaattgttaaggatttaaaaaagaaaacaattgctaaattttatgta 3965438  T
Q  101 gaaaaagttgttttttaatattccaataggttgattacaattttgaaggtaaattttctacttt------------aaatgtcataagggttagggcact 188  Q
    |||||| |||||||||||||||||   |||||||||||||||||||||||||||||| ||||||            ||||||||||||||||||||||||    
T  3965439 gaaaaaattgttttttaatattcc---aggttgattacaattttgaaggtaaattttttactttaagtttcttaacaaatgtcataagggttagggcact 3965535  T
Q  189 tgttatcatttcccttataaaaat 212  Q
    | |||||||||||||| |||||||    
T  3965536 tattatcatttcccttgtaaaaat 3965559  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 57 - 139
Target Start/End: Complemental strand, 44949336 - 44949254
Alignment:
Q  57 ttgttaaggatttaaaaaagaaaacaattgctaaattttatgtagaaaaagttgttttttaatattccaataggttgattaca 139  Q
    |||||||| ||||||||| ||||||||||| ||||||||| |||||||| ||||||||||||| || ||||| ||||| ||||    
T  44949336 ttgttaagaatttaaaaatgaaaacaattgttaaattttacgtagaaaatgttgttttttaatctttcaataagttgaataca 44949254  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 57 - 139
Target Start/End: Complemental strand, 1852949 - 1852867
Alignment:
Q  57 ttgttaaggatttaaaaaagaaaacaattgctaaattttatgtagaaaaagttgttttttaatattccaataggttgattaca 139  Q
    |||||||||||| ||||||||||||||||| |||||||||| || ||||| ||| |||| |||||| |||||  |||||||||    
T  1852949 ttgttaaggattcaaaaaagaaaacaattgataaattttatataaaaaaaattgcttttcaatatttcaatatattgattaca 1852867  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 57 - 118
Target Start/End: Original strand, 3272361 - 3272422
Alignment:
Q  57 ttgttaaggatttaaaaaagaaaacaattgctaaattttatgtagaaaaagttgttttttaa 118  Q
    |||||||||||||||||| | ||| ||||| ||||||||||| |||||||||| ||||||||    
T  3272361 ttgttaaggatttaaaaatggaaataattggtaaattttatgaagaaaaagttattttttaa 3272422  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 57 - 133
Target Start/End: Complemental strand, 35316262 - 35316186
Alignment:
Q  57 ttgttaaggatttaaaaaagaaaacaattgctaaattttatgtagaaaaagttgttttttaatattccaataggttg 133  Q
    ||||||| |||| |||||  |||||||||||||||||||||||||||| | ||  |||| |||||| ||||||||||    
T  35316262 ttgttaaagattcaaaaataaaaacaattgctaaattttatgtagaaagaatttcttttgaatatttcaataggttg 35316186  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 90 - 134
Target Start/End: Complemental strand, 42088552 - 42088508
Alignment:
Q  90 aattttatgtagaaaaagttgttttttaatattccaataggttga 134  Q
    ||||||||||||||||||||| |||||||| || |||||||||||    
T  42088552 aattttatgtagaaaaagttgctttttaatctttcaataggttga 42088508  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 57 - 108
Target Start/End: Original strand, 31663599 - 31663650
Alignment:
Q  57 ttgttaaggatttaaaaaagaaaacaattgctaaattttatgtagaaaaagt 108  Q
    |||||||||||| | ||| ||||||||||| |||||||||| ||||||||||    
T  31663599 ttgttaaggattcacaaatgaaaacaattgataaattttatatagaaaaagt 31663650  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 70 - 134
Target Start/End: Complemental strand, 6508445 - 6508381
Alignment:
Q  70 aaaaaagaaaacaattgctaaattttatgtagaaaaagttgttttttaatattccaataggttga 134  Q
    ||||||| ||| ||||| ||||||| ||| ||||||||||||| |||||| || ||||| |||||    
T  6508445 aaaaaaggaaataattgttaaatttcatgaagaaaaagttgttatttaatctttcaataagttga 6508381  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 51 - 119
Target Start/End: Complemental strand, 12204753 - 12204685
Alignment:
Q  51 taacaattgttaaggatttaaaaaagaaaacaattgctaaattttatgtagaaaaagttgttttttaat 119  Q
    ||||||||||||| |||||| ||| | ||||||||| ||| |||| |||| |||||  |||||||||||    
T  12204753 taacaattgttaatgatttagaaatggaaacaattgataatttttctgtaaaaaaatatgttttttaat 12204685  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 60 - 104
Target Start/End: Original strand, 18576861 - 18576905
Alignment:
Q  60 ttaaggatttaaaaaagaaaacaattgctaaattttatgtagaaa 104  Q
    |||| |||||||||||  ||||||||| |||||||||||||||||    
T  18576861 ttaaagatttaaaaaaagaaacaattgttaaattttatgtagaaa 18576905  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 70 - 122
Target Start/End: Complemental strand, 20150496 - 20150444
Alignment:
Q  70 aaaaaagaaaacaattgctaaattttatgtagaaaaagttgttttttaatatt 122  Q
    ||||||| ||||||||| |||||||||||| |||| ||||  |||||||||||    
T  20150496 aaaaaaggaaacaattgataaattttatgttgaaatagttactttttaatatt 20150444  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 46; Significance: 2e-17; HSPs: 9)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 58 - 139
Target Start/End: Complemental strand, 28024626 - 28024546
Alignment:
Q  58 tgttaaggatttaaaaaagaaaacaattgctaaattttatgtagaaaaagttgttttttaatattccaataggttgattaca 139  Q
    ||||||||||||||||| | |||||||||||||||||||||| | |||||||| ||||||||||| |||||| |||| ||||    
T  28024626 tgttaaggatttaaaaatggaaacaattgctaaattttatgttg-aaaagttgctttttaatatttcaatagattgaataca 28024546  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 57 - 134
Target Start/End: Original strand, 49119564 - 49119641
Alignment:
Q  57 ttgttaaggatttaaaaaagaaaacaattgctaaattttatgtagaaaaagttgttttttaatattccaataggttga 134  Q
    ||||||| || | ||||||| |||||||||||||||||| ||||||| |||||| |||||||| || ||||| |||||    
T  49119564 ttgttaaagaataaaaaaaggaaacaattgctaaattttttgtagaataagttgctttttaatttttcaatatgttga 49119641  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 57 - 117
Target Start/End: Original strand, 12101378 - 12101438
Alignment:
Q  57 ttgttaaggatttaaaaaagaaaacaattgctaaattttatgtagaaaaagttgtttttta 117  Q
    |||||||||||| ||||||||||| | | | ||||||||||||| |||||||| |||||||    
T  12101378 ttgttaaggattaaaaaaagaaaatattggataaattttatgtaaaaaaagttatttttta 12101438  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 57 - 115
Target Start/End: Complemental strand, 48331550 - 48331492
Alignment:
Q  57 ttgttaaggatttaaaaaagaaaacaattgctaaattttatgtagaaaaagttgttttt 115  Q
    ||||||||||||||||| || |||  |||| | | ||||||||||||||||||||||||    
T  48331550 ttgttaaggatttaaaagaggaaattattgatgagttttatgtagaaaaagttgttttt 48331492  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 57 - 106
Target Start/End: Complemental strand, 35116974 - 35116925
Alignment:
Q  57 ttgttaaggatttaaaaaagaaaacaattgctaaattttatgtagaaaaa 106  Q
    |||||||||||| ||||||| ||| ||||  |||||||||||||||||||    
T  35116974 ttgttaaggattcaaaaaaggaaataatttataaattttatgtagaaaaa 35116925  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 59 - 128
Target Start/End: Original strand, 38140331 - 38140400
Alignment:
Q  59 gttaaggatttaaaaaagaaaacaattgctaaattttatgtagaaaaagttgttttttaatattccaata 128  Q
    ||||| |||| ||| ||| ||||||||| |||||||||||||||||| |||  ||||| ||||| |||||    
T  38140331 gttaaagattcaaagaaggaaacaattgttaaattttatgtagaaaatgttactttttgatatttcaata 38140400  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 57 - 134
Target Start/End: Complemental strand, 1506682 - 1506603
Alignment:
Q  57 ttgttaaggatttaaaaaagaaaacaattgctaaattttatgtagaaaaagt--tgttttttaatattccaataggttga 134  Q
    ||||||| ||||| |||||| ||| |||| ||||| ||||| |||||||| |  | |||||||||||| |||||||||||    
T  1506682 ttgttaaagattttaaaaaggaaaaaattactaaaatttatatagaaaaaatattattttttaatatttcaataggttga 1506603  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 57 - 109
Target Start/End: Complemental strand, 30424958 - 30424906
Alignment:
Q  57 ttgttaaggatttaaaaaagaaaacaattgctaaattttatgtagaaaaagtt 109  Q
    |||||||||||  ||||| | ||||||||||||| ||| ||||||||||||||    
T  30424958 ttgttaaggataaaaaaatggaaacaattgctaactttcatgtagaaaaagtt 30424906  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 52 - 116
Target Start/End: Original strand, 36586822 - 36586886
Alignment:
Q  52 aacaattgttaaggatttaaaaaagaaaacaattgctaaattttatgtagaaaaagttgtttttt 116  Q
    |||| ||||||| ||| |||||| ||||| ||||| ||| ||| ||||||| |||||||||||||    
T  36586822 aacatttgttaaagatctaaaaatgaaaataattgataactttcatgtagataaagttgtttttt 36586886  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 44; Significance: 4e-16; HSPs: 7)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 55 - 134
Target Start/End: Complemental strand, 30775327 - 30775248
Alignment:
Q  55 aattgttaaggatttaaaaaagaaaacaattgctaaattttatgtagaaaaagttgttttttaatattccaataggttga 134  Q
    |||||||||||||| ||||||||||| ||||| ||||||| || ||||||||||| ||||||||| || ||||| |||||    
T  30775327 aattgttaaggattcaaaaaagaaaataattgttaaatttcatatagaaaaagttattttttaatctttcaataagttga 30775248  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 57 - 119
Target Start/End: Original strand, 6067506 - 6067568
Alignment:
Q  57 ttgttaaggatttaaaaaagaaaacaattgctaaattttatgtagaaaaagttgttttttaat 119  Q
    ||||||| || ||||||||||||| ||||| ||||||| ||||||||||||||  ||||||||    
T  6067506 ttgttaaagacttaaaaaagaaaataattgttaaatttcatgtagaaaaagtttctttttaat 6067568  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 70 - 108
Target Start/End: Original strand, 32053890 - 32053928
Alignment:
Q  70 aaaaaagaaaacaattgctaaattttatgtagaaaaagt 108  Q
    ||||||||||||||||| |||||||||||||||||||||    
T  32053890 aaaaaagaaaacaattgttaaattttatgtagaaaaagt 32053928  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 52 - 119
Target Start/End: Original strand, 31597512 - 31597580
Alignment:
Q  52 aacaattgttaaggatttaaaaaagaaaa-caattgctaaattttatgtagaaaaagttgttttttaat 119  Q
    |||| ||||||||||||||||||| |||| |||||  ||| ||||||||||||||||||  ||||||||    
T  31597512 aacacttgttaaggatttaaaaaataaaaacaatttataacttttatgtagaaaaagttactttttaat 31597580  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 57 - 112
Target Start/End: Complemental strand, 30326789 - 30326734
Alignment:
Q  57 ttgttaaggatttaaaaaagaaaacaattgctaaattttatgtagaaaaagttgtt 112  Q
    |||||||||||||||||| |  |||||||| ||| ||| |||||||||||||||||    
T  30326789 ttgttaaggatttaaaaatgggaacaattgataactttcatgtagaaaaagttgtt 30326734  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 80 - 125
Target Start/End: Original strand, 3444946 - 3444992
Alignment:
Q  80 acaattgctaaattttatgtagaa-aaagttgttttttaatattcca 125  Q
    ||||||||||||||||||||| || |||||||||||||||| |||||    
T  3444946 acaattgctaaattttatgtaaaataaagttgttttttaatcttcca 3444992  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 59 - 117
Target Start/End: Original strand, 29791054 - 29791111
Alignment:
Q  59 gttaaggatttaaaaaagaaaacaattgctaaattttatgtagaaaaagttgtttttta 117  Q
    |||||||||| ||||||| ||||||||| ||||||||||||| ||||| || |||||||    
T  29791054 gttaaggatt-aaaaaagtaaacaattgttaaattttatgtaaaaaaaattatttttta 29791111  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 44; Significance: 4e-16; HSPs: 10)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 57 - 116
Target Start/End: Complemental strand, 3775455 - 3775396
Alignment:
Q  57 ttgttaaggatttaaaaaagaaaacaattgctaaattttatgtagaaaaagttgtttttt 116  Q
    |||||||||||||||||||||||||||||| ||  |||||||||||||| ||||||||||    
T  3775455 ttgttaaggatttaaaaaagaaaacaattgatagtttttatgtagaaaatgttgtttttt 3775396  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 57 - 127
Target Start/End: Complemental strand, 21240241 - 21240171
Alignment:
Q  57 ttgttaaggatttaaaaaagaaaacaattgctaaattttatgtagaaaaagttgttttttaatattccaat 127  Q
    |||||||||||||||||| | ||||||||| ||| ||| | ||||||||||||||||||||||||| ||||    
T  21240241 ttgttaaggatttaaaaatggaaacaattgataactttcacgtagaaaaagttgttttttaatatttcaat 21240171  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 65 - 128
Target Start/End: Original strand, 24943556 - 24943619
Alignment:
Q  65 gatttaaaaaagaaaacaattgctaaattttatgtagaaaaagttgttttttaatattccaata 128  Q
    ||||||| |||||||| ||||| |||| ||||||||||||||||||||||||||| || |||||    
T  24943556 gatttaataaagaaaataattgttaaactttatgtagaaaaagttgttttttaatctttcaata 24943619  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 54 - 140
Target Start/End: Original strand, 50890688 - 50890775
Alignment:
Q  54 caattgttaaggatttaaaaaagaaaacaattgctaaattttatgt-agaaaaagttgttttttaatattccaataggttgattacaa 140  Q
    |||||||||| | || ||||| | |||||||||||||||||||||| | ||||||||| ||||||| ||| ||||||||||| |||||    
T  50890688 caattgttaaaggttaaaaaatggaaacaattgctaaattttatgtaaaaaaaagttgctttttaaaatttcaataggttgaatacaa 50890775  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 57 - 128
Target Start/End: Original strand, 26009675 - 26009746
Alignment:
Q  57 ttgttaaggatt-taaaaaagaaaacaattgctaaattttatgtagaaaaagttgttttttaatattccaata 128  Q
    |||||||||||| ||||| || ||| ||||||||| ||||||||| ||||||||| ||||||||||| |||||    
T  26009675 ttgttaaggattctaaaatag-aaataattgctaacttttatgtataaaaagttgctttttaatatttcaata 26009746  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 57 - 116
Target Start/End: Complemental strand, 44369121 - 44369062
Alignment:
Q  57 ttgttaaggatttaaaaaagaaaacaattgctaaattttatgtagaaaaagttgtttttt 116  Q
    |||||||||||| ||||||||||| ||||| |||||||||| || ||||  |||||||||    
T  44369121 ttgttaaggattaaaaaaagaaaataattgttaaattttatataaaaaatattgtttttt 44369062  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 57 - 116
Target Start/End: Original strand, 54639678 - 54639737
Alignment:
Q  57 ttgttaaggatttaaaaaagaaaacaattgctaaattttatgtagaaaaagttgtttttt 116  Q
    ||||||| |||||||||| ||||||||||| ||  ||| ||||||||||||||| |||||    
T  54639678 ttgttaaagatttaaaaatgaaaacaattgatagctttcatgtagaaaaagttgcttttt 54639737  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 59 - 109
Target Start/End: Complemental strand, 4068417 - 4068367
Alignment:
Q  59 gttaaggatttaaaaaagaaaacaattgctaaattttatgtagaaaaagtt 109  Q
    |||||||||| ||||||  ||||||||| |||||| |||||||||||||||    
T  4068417 gttaaggattcaaaaaaagaaacaattgttaaattctatgtagaaaaagtt 4068367  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 57 - 109
Target Start/End: Complemental strand, 48051789 - 48051737
Alignment:
Q  57 ttgttaaggatttaaaaaagaaaacaattgctaaattttatgtagaaaaagtt 109  Q
    |||||||||||| |||||   ||| ||||| ||||||||||||||||||||||    
T  48051789 ttgttaaggattcaaaaatagaaataattgataaattttatgtagaaaaagtt 48051737  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 54 - 134
Target Start/End: Complemental strand, 50620728 - 50620648
Alignment:
Q  54 caattgttaaggatttaaaaaagaaaacaattgctaaattttatgtagaaaaagttgttttttaatattccaataggttga 134  Q
    |||| |||||||| | ||||||| ||| ||||   ||||||||| |||||||||||| |||||| |||| ||||| |||||    
T  50620728 caatggttaaggaatcaaaaaaggaaataattatgaaattttatatagaaaaagttgctttttactatttcaataagttga 50620648  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 44; Significance: 4e-16; HSPs: 7)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 59 - 106
Target Start/End: Original strand, 29577269 - 29577316
Alignment:
Q  59 gttaaggatttaaaaaagaaaacaattgctaaattttatgtagaaaaa 106  Q
    |||||||||||||||||| |||||||||||||||||||||||||||||    
T  29577269 gttaaggatttaaaaaaggaaacaattgctaaattttatgtagaaaaa 29577316  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 59 - 116
Target Start/End: Complemental strand, 50173472 - 50173415
Alignment:
Q  59 gttaaggatttaaaaaagaaaacaattgctaaattttatgtagaaaaagttgtttttt 116  Q
    |||||||||| ||||||| |||||||||||||||||||||| |||| ||||| |||||    
T  50173472 gttaaggattcaaaaaaggaaacaattgctaaattttatgttgaaagagttgcttttt 50173415  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 57 - 140
Target Start/End: Complemental strand, 25985486 - 25985403
Alignment:
Q  57 ttgttaaggatttaaaaaagaaaacaattgctaaattttatgtagaaaaagttgttttttaatattccaataggttgattacaa 140  Q
    ||||||||||||||||||   ||| ||||| ||| |||||| ||||||||||||||||||||| || | ||| ||||| |||||    
T  25985486 ttgttaaggatttaaaaatagaaataattgataacttttatatagaaaaagttgttttttaatgtttcgatatgttgaatacaa 25985403  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 65 - 117
Target Start/End: Complemental strand, 38364545 - 38364493
Alignment:
Q  65 gatttaaaaaagaaaacaattgctaaattttatgtagaaaaagttgtttttta 117  Q
    |||||||||| ||||||||||||||||||||| || ||||| |||| ||||||    
T  38364545 gatttaaaaacgaaaacaattgctaaattttacgttgaaaatgttgcttttta 38364493  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 57 - 119
Target Start/End: Complemental strand, 31596362 - 31596300
Alignment:
Q  57 ttgttaaggatttaaaaaagaaaacaattgctaaattttatgtagaaaaagttgttttttaat 119  Q
    ||||||||||||||||| |  ||||||||| |||||||||||| |||||| ||  ||||||||    
T  31596362 ttgttaaggatttaaaataagaaacaattgataaattttatgttgaaaaaattactttttaat 31596300  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 50 - 111
Target Start/End: Complemental strand, 44765227 - 44765166
Alignment:
Q  50 ctaacaattgttaaggatttaaaaaagaaaacaattgctaaattttatgtagaaaaagttgt 111  Q
    |||||| ||||||||||||||||||  |||| ||||  ||| ||||||||||||||| ||||    
T  44765227 ctaacacttgttaaggatttaaaaataaaaataattaataacttttatgtagaaaaaattgt 44765166  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 57 - 105
Target Start/End: Complemental strand, 30076594 - 30076546
Alignment:
Q  57 ttgttaaggatttaaaaaagaaaacaattgctaaattttatgtagaaaa 105  Q
    |||||||||||| ||||||| ||||||||| ||||||||| || |||||    
T  30076594 ttgttaaggattcaaaaaaggaaacaattgttaaattttaagttgaaaa 30076546  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 43; Significance: 0.000000000000001; HSPs: 5)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 57 - 139
Target Start/End: Original strand, 41807223 - 41807304
Alignment:
Q  57 ttgttaaggatttaaaaaagaaaacaattgctaaattttatgtagaaaaagttgttttttaatattccaataggttgattaca 139  Q
    ||||||||||||||||||   |||||||| |||||||||||||||||||||||   |||||||||| ||||||||||| ||||    
T  41807223 ttgttaaggatttaaaaatagaaacaattactaaattttatgtagaaaaagtt-acttttaatatttcaataggttgaataca 41807304  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 59 - 128
Target Start/End: Original strand, 950650 - 950719
Alignment:
Q  59 gttaaggatttaaaaaagaaaacaattgctaaattttatgtagaaaaagttgttttttaatattccaata 128  Q
    |||||||||| |||||||| ||||||||||| |||||||||||||||||||  |||||| |||| |||||    
T  950650 gttaaggattcaaaaaagataacaattgctagattttatgtagaaaaagttactttttagtatttcaata 950719  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 57 - 117
Target Start/End: Complemental strand, 9765054 - 9764994
Alignment:
Q  57 ttgttaaggatttaaaaaagaaaacaattgctaaattttatgtagaaaaagttgtttttta 117  Q
    |||||||||||| |||| || ||| ||||| ||| ||||||||||||||| ||||||||||    
T  9765054 ttgttaaggattcaaaagaggaaataattgttaagttttatgtagaaaaaattgtttttta 9764994  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 54 - 166
Target Start/End: Original strand, 34903329 - 34903443
Alignment:
Q  54 caattgttaaggatttaaaaaagaaaacaattgctaaattttatgtagaaaaagttgttttttaatattccaataggttgatt--acaattttgaaggta 151  Q
    |||| |||||||| | ||||||| ||||||||   |||||| ||||||||||| ||| |||||| |||| ||||| ||||| |  |||||||| ||| ||    
T  34903329 caatggttaaggaatcaaaaaaggaaacaattctgaaatttcatgtagaaaaaattgctttttactatttcaataagttgaatgcacaattttcaagata 34903428  T
Q  152 aattttctactttaa 166  Q
    || || |||||||||    
T  34903429 aagttactactttaa 34903443  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 71 - 128
Target Start/End: Complemental strand, 2249305 - 2249248
Alignment:
Q  71 aaaaagaaaacaattgctaaattttatgtagaaaaagttgttttttaatattccaata 128  Q
    |||||| |||||||||||||||||||||| ||| |||||  |||||| |||| |||||    
T  2249305 aaaaaggaaacaattgctaaattttatgttgaagaagttactttttagtatttcaata 2249248  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 39; Significance: 0.0000000000003; HSPs: 6)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 57 - 119
Target Start/End: Original strand, 7859116 - 7859178
Alignment:
Q  57 ttgttaaggatttaaaaaagaaaacaattgctaaattttatgtagaaaaagttgttttttaat 119  Q
    ||||||| |||||||||||||||||||||| || ||||||||| |||||||||  ||||||||    
T  7859116 ttgttaaagatttaaaaaagaaaacaattgatatattttatgttgaaaaagttactttttaat 7859178  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 48 - 116
Target Start/End: Original strand, 44812760 - 44812828
Alignment:
Q  48 tgctaacaattgttaaggatttaaaaaagaaaacaattgctaaattttatgtagaaaaagttgtttttt 116  Q
    ||||||||| ||||| ||||| ||||| ||||||| ||| ||| ||||||||| |||||||||||||||    
T  44812760 tgctaacaagtgttatggattcaaaaatgaaaacagttgttaacttttatgtataaaaagttgtttttt 44812828  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 61 - 116
Target Start/End: Original strand, 41235827 - 41235882
Alignment:
Q  61 taaggatttaaaaaagaaaacaattgctaaattttatgtagaaaaagttgtttttt 116  Q
    |||||||| ||||| | ||||||||| ||||||| |||||||||||||||||||||    
T  41235827 taaggattcaaaaatggaaacaattgataaatttcatgtagaaaaagttgtttttt 41235882  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 59 - 109
Target Start/End: Original strand, 31219192 - 31219242
Alignment:
Q  59 gttaaggatttaaaaaagaaaacaattgctaaattttatgtagaaaaagtt 109  Q
    ||||||||||  |||||| |||||||||||||||||||  |||||||||||    
T  31219192 gttaaggattataaaaaggaaacaattgctaaattttagatagaaaaagtt 31219242  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 58 - 122
Target Start/End: Complemental strand, 35471630 - 35471566
Alignment:
Q  58 tgttaaggatttaaaaaagaaaacaattgctaaattttatgtagaaaaagttgttttttaatatt 122  Q
    ||||||| |||| ||||  |||||||||  ||| ||||||||||||||| |||| ||||||||||    
T  35471630 tgttaagtattttaaaataaaaacaattaataatttttatgtagaaaaaattgtattttaatatt 35471566  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 54 - 106
Target Start/End: Complemental strand, 42350504 - 42350452
Alignment:
Q  54 caattgttaaggatttaaaaaagaaaacaattgctaaattttatgtagaaaaa 106  Q
    |||| |||||||||||||||| | ||| ||||  |||||||||||||||||||    
T  42350504 caatggttaaggatttaaaaatggaaataatttataaattttatgtagaaaaa 42350452  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 36; Significance: 0.00000000002; HSPs: 7)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 57 - 116
Target Start/End: Complemental strand, 17630374 - 17630315
Alignment:
Q  57 ttgttaaggatttaaaaaagaaaacaattgctaaattttatgtagaaaaagttgtttttt 116  Q
    ||||||||||||||||| || ||| ||||  |||||||||||||||||||||| ||||||    
T  17630374 ttgttaaggatttaaaagaggaaataatttataaattttatgtagaaaaagttttttttt 17630315  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 57 - 116
Target Start/End: Complemental strand, 52698548 - 52698489
Alignment:
Q  57 ttgttaaggatttaaaaaagaaaacaattgctaaattttatgtagaaaaagttgtttttt 116  Q
    |||||||||||| ||||| | ||||||||| ||| ||||||| |||||||||||||||||    
T  52698548 ttgttaaggattaaaaaatggaaacaattgataacttttatggagaaaaagttgtttttt 52698489  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 78 - 134
Target Start/End: Complemental strand, 32003107 - 32003051
Alignment:
Q  78 aaacaattgctaaattttatgtagaaaaagttgttttttaatattccaataggttga 134  Q
    ||||||||| ||||| ||||||||||||| ||||||||| ||||| ||||| |||||    
T  32003107 aaacaattgataaatcttatgtagaaaaaattgttttttgatatttcaatatgttga 32003051  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 57 - 119
Target Start/End: Complemental strand, 44529372 - 44529310
Alignment:
Q  57 ttgttaaggatttaaaaaagaaaacaattgctaaattttatgtagaaaaagttgttttttaat 119  Q
    |||||||| |||| |||||||||  ||||| |||||||||||| |||||||||  ||||||||    
T  44529372 ttgttaagaattttaaaaagaaagtaattgataaattttatgttgaaaaagttactttttaat 44529310  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 57 - 115
Target Start/End: Complemental strand, 52328109 - 52328051
Alignment:
Q  57 ttgttaaggatttaaaaaagaaaacaattgctaaattttatgtagaaaaagttgttttt 115  Q
    ||||||| |||||||||||| ||| | ||| ||||||||||||  ||||||||||||||    
T  52328109 ttgttaaagatttaaaaaagtaaatagttgataaattttatgtttaaaaagttgttttt 52328051  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 77 - 118
Target Start/End: Original strand, 44397645 - 44397686
Alignment:
Q  77 aaaacaattgctaaattttatgtagaaaaagttgttttttaa 118  Q
    |||||||||| |||||||||  ||||||||||||||||||||    
T  44397645 aaaacaattgttaaattttacatagaaaaagttgttttttaa 44397686  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 79 - 139
Target Start/End: Complemental strand, 44698124 - 44698064
Alignment:
Q  79 aacaattgctaaattttatgtagaaaaagttgttttttaatattccaataggttgattaca 139  Q
    |||||||| |||||||||||| |||||||||  |||||||| || ||||| ||||| ||||    
T  44698124 aacaattgataaattttatgttgaaaaagttactttttaatgtttcaatatgttgaataca 44698064  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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