View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20654_low_37 (Length: 239)
Name: NF20654_low_37
Description: NF20654
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20654_low_37 |
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| [»] scaffold0586 (1 HSPs) |
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Alignment Details
Target: scaffold0586 (Bit Score: 182; Significance: 2e-98; HSPs: 1)
Name: scaffold0586
Description:
Target: scaffold0586; HSP #1
Raw Score: 182; E-Value: 2e-98
Query Start/End: Original strand, 1 - 223
Target Start/End: Original strand, 9784 - 10006
Alignment:
| Q |
1 |
tttctctgcttgcttattgcttttgatgtcgcatcatttatctgtttgctttttgttcnnnnnnnatgagaattttaaccgaactttgttacttaatgaa |
100 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||| ||||||||||| |
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| T |
9784 |
tttctctgcttgcttattgcttttgatgtcgcatcatttatctgtttgctttttgttctttttttgtgagaattttaacccaactttgatacttaatgaa |
9883 |
T |
|
| Q |
101 |
ttagtcatgtacagattcaattgttttaaattgtagatttaatactcaaataaattgctagtacgggaaaattatgtatcagaattttaaattgtagatt |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |||||||| |
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| T |
9884 |
ttagtcatgtacagattcaattgttttaaattgtagatttaatactcaaataaattgctagtacgggaaaattatgtatcggaattttaaactgtagatt |
9983 |
T |
|
| Q |
201 |
ttaaagtgtatgaactatgaatt |
223 |
Q |
| |
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||||||||||||||||||||||| |
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| T |
9984 |
ttaaagtgtatgaactatgaatt |
10006 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 156; Significance: 5e-83; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 156; E-Value: 5e-83
Query Start/End: Original strand, 1 - 221
Target Start/End: Original strand, 19701356 - 19701576
Alignment:
| Q |
1 |
tttctctgcttgcttattgcttttgatgtcgcatcatttatctgtttgctttttgttcnnnnnnnatgagaattttaaccgaactttgttacttaatgaa |
100 |
Q |
| |
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|||||||||||||||||||||| ||||||| ||||||||||||||||||||||||||| |||||||||||||| ||||||||||||||| ||| |
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| T |
19701356 |
tttctctgcttgcttattgcttctgatgtcacatcatttatctgtttgctttttgttctttttttgtgagaattttaacccaactttgttacttaacgaa |
19701455 |
T |
|
| Q |
101 |
ttagtcatgtacagattcaattgttttaaattgtagatttaatactcaaataaattgctagtacgggaaaattatgtatcagaattttaaattgtagatt |
200 |
Q |
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| T |
19701456 |
ttagtcatgtatagattcaattgttttaaattgtagatttaatactcaaataaattgctagtatgggaaaatcatgtatcaaaattttaaactgtagatt |
19701555 |
T |
|
| Q |
201 |
ttaaagtgtatgaactatgaa |
221 |
Q |
| |
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|||||||||||||| |||||| |
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| T |
19701556 |
ttaaagtgtatgaagtatgaa |
19701576 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 156; Significance: 5e-83; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 156; E-Value: 5e-83
Query Start/End: Original strand, 1 - 221
Target Start/End: Original strand, 22893998 - 22894218
Alignment:
| Q |
1 |
tttctctgcttgcttattgcttttgatgtcgcatcatttatctgtttgctttttgttcnnnnnnnatgagaattttaaccgaactttgttacttaatgaa |
100 |
Q |
| |
|
|||||||| ||||||||||||| ||||||||||| ||||||||||||||||||||||| |||||||||||||| ||| ||||||||||||||| |
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| T |
22893998 |
tttctctgtttgcttattgcttctgatgtcgcataatttatctgtttgctttttgttctttttttgtgagaattttaacccaacattgttacttaatgaa |
22894097 |
T |
|
| Q |
101 |
ttagtcatgtacagattcaattgttttaaattgtagatttaatactcaaataaattgctagtacgggaaaattatgtatcagaattttaaattgtagatt |
200 |
Q |
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|
||||||||||||| ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |||||||| |
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| T |
22894098 |
ttagtcatgtacaaattcaattgttttaaattgtagatttaatacaataataaattgctagtacgggaaaattatgtatcagaattttaaactgtagatt |
22894197 |
T |
|
| Q |
201 |
ttaaagtgtatgaactatgaa |
221 |
Q |
| |
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||||||||||||||||||||| |
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| T |
22894198 |
ttaaagtgtatgaactatgaa |
22894218 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 143; Significance: 3e-75; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 143; E-Value: 3e-75
Query Start/End: Original strand, 1 - 203
Target Start/End: Complemental strand, 32717755 - 32717552
Alignment:
| Q |
1 |
tttctctgcttgcttattgcttttgatgtcgcatcatttatctgtttgctttttgttcnnnnnnnatgagaattttaaccgaactttgttacttaatgaa |
100 |
Q |
| |
|
||||||||||||||||||| ||||||||| |||||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||||| |
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| T |
32717755 |
tttctctgcttgcttattgtttttgatgttgcatcatttatctgtttgctttttgttctttttttgtgagaattttaacccaactttgttacttaatgaa |
32717656 |
T |
|
| Q |
101 |
ttagtcatgtacagattcaattgttttaaattgtagatttaatactc-aaataaattgctagtacgggaaaattatgtatcagaattttaaattgtagat |
199 |
Q |
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||||||||||||| ||||||||||||||||||||||||||||||||| |||||||||||||||| ||||||||||||||||||||||||||| |||||| |
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| T |
32717655 |
ttagtcatgtacatattcaattgttttaaattgtagatttaatactcaaaataaattgctagtaagggaaaattatgtatcagaattttaaaccgtagat |
32717556 |
T |
|
| Q |
200 |
ttta |
203 |
Q |
| |
|
|||| |
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|
| T |
32717555 |
ttta |
32717552 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 140; E-Value: 2e-73
Query Start/End: Original strand, 1 - 223
Target Start/End: Original strand, 10637839 - 10638053
Alignment:
| Q |
1 |
tttctctgcttgcttattgcttttgatgtcgcatcatttatctgtttgctttttgttcnnnnnnnatgagaattttaaccgaactttgttacttaatgaa |
100 |
Q |
| |
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|||| |||||||||||||||||||||||||||||||||||||| |||||||||||||| |||||||||||||| |||||||| | ||| |
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| T |
10637839 |
tttccctgcttgcttattgcttttgatgtcgcatcatttatctttttgctttttgttctttttttgtgagaattttaacccaactttgtga------gaa |
10637932 |
T |
|
| Q |
101 |
ttagtcatgtacagattcaattgttttaaattgtagatttaatactcaaataaattgctagtacgggaaaattatgtatcagaattttaaattgtagatt |
200 |
Q |
| |
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|| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||| |
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| T |
10637933 |
tt--tcatgtacagattcaattgttttaaattgtagatttaatactcaaataaattgctagtacgggaaaattatgtatcagaattttaaactgcagatt |
10638030 |
T |
|
| Q |
201 |
ttaaagtgtatgaactatgaatt |
223 |
Q |
| |
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||||||||||||||||||||||| |
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| T |
10638031 |
ttaaagtgtatgaactatgaatt |
10638053 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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