View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20654_low_4 (Length: 631)
Name: NF20654_low_4
Description: NF20654
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20654_low_4 |
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Alignment Details
Target: chr1 (Bit Score: 213; Significance: 1e-116; HSPs: 9)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 213; E-Value: 1e-116
Query Start/End: Original strand, 1 - 217
Target Start/End: Original strand, 44075481 - 44075697
Alignment:
| Q |
1 |
aattggactcaaagcatattacatgctagttttattatgaatttggaagagaaaacaaacttgtagatgtcaaagttcattaacaatagattcatgaagc |
100 |
Q |
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| T |
44075481 |
aattggactcaaagcatattacatgctagttttattatgaatttggaagagaaaacaaacttgtagatgtcaaatttcattaacaatagattcatgaagc |
44075580 |
T |
|
| Q |
101 |
atgttttctatccagaagtggaatttgtataatactctcattctaagagaagttaacattggtgtttaaattaattttgatttaaaactctgtaaatgta |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44075581 |
atgttttctatccagaagtggaatttgtataatactctcattctaagagaagttaacattggtgtttaaattaattttgatttaaaactctgtaaatgta |
44075680 |
T |
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| Q |
201 |
tcgtaactgattcaatt |
217 |
Q |
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||||||||||||||||| |
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| T |
44075681 |
tcgtaactgattcaatt |
44075697 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 105; E-Value: 4e-52
Query Start/End: Original strand, 415 - 523
Target Start/End: Original strand, 44087812 - 44087920
Alignment:
| Q |
415 |
aattgatacaacactggaagatgtgcataaagagtcgtttactcaacttcgtcaacttgttctagacaatgtggcgaagatggagaattgcggtgatgat |
514 |
Q |
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| T |
44087812 |
aattgatacaacactggaagatgtgcataaatagtcgtttactcaacttcgtcaacttgttctagacaatgtggcgaagatggagaattgcggtgatgat |
44087911 |
T |
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| Q |
515 |
tttgttaaa |
523 |
Q |
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||||||||| |
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| T |
44087912 |
tttgttaaa |
44087920 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 93; E-Value: 6e-45
Query Start/End: Original strand, 514 - 614
Target Start/End: Original strand, 44088208 - 44088308
Alignment:
| Q |
514 |
ttttgttaaacattatagattgtgggttaatttgtttacgaatgctattgctttctaataaagtgcattgttttcttattgatattgtttactacatact |
613 |
Q |
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| T |
44088208 |
ttttgtttaacattatagattgtgggttaatttgtttacgaatgctattgctttctaataaagtgcattgttttcttattgatattgcttactacatact |
44088307 |
T |
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| Q |
614 |
t |
614 |
Q |
| |
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| |
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| T |
44088308 |
t |
44088308 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 86; E-Value: 9e-41
Query Start/End: Original strand, 422 - 523
Target Start/End: Original strand, 44079841 - 44079942
Alignment:
| Q |
422 |
acaacactggaagatgtgcataaagagtcgtttactcaacttcgtcaacttgttctagacaatgtggcgaagatggagaattgcggtgatgattttgtta |
521 |
Q |
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|||||| ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||| |
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| T |
44079841 |
acaacagtggaagatgtgcataaagagtcgtttattcaacttcgtcaacttgttctagacaatgtggcgaagatggagaattgcggtgatgagtctgtta |
44079940 |
T |
|
| Q |
522 |
aa |
523 |
Q |
| |
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|| |
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| T |
44079941 |
aa |
44079942 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 74; E-Value: 1e-33
Query Start/End: Original strand, 514 - 614
Target Start/End: Original strand, 44068211 - 44068314
Alignment:
| Q |
514 |
ttttgttaaacattatagattgtgg---gttaatttgtttacgaatgctattgctttctaataaagtgcattgttttcttattgatattgtttactacat |
610 |
Q |
| |
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||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |||| |
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| T |
44068211 |
ttttgtttaacattatagattgtggcgggttaatttgtttacgaatgctattgctttctaataaagtggcttgttttcttattgatattgtttacgacat |
44068310 |
T |
|
| Q |
611 |
actt |
614 |
Q |
| |
|
|||| |
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|
| T |
44068311 |
actt |
44068314 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #6
Raw Score: 70; E-Value: 3e-31
Query Start/End: Original strand, 514 - 614
Target Start/End: Original strand, 44080231 - 44080334
Alignment:
| Q |
514 |
ttttgttaaacattatagattgtgg---gttaatttgtttacgaatgctattgctttctaataaagtgcattgttttcttattgatattgtttactacat |
610 |
Q |
| |
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||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |||| |
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| T |
44080231 |
ttttgtttaacattatagattgtggcgggttaatttgtttacgaatgctattgctttctaataaagtggcttgttttcttattgatattgtttagaacat |
44080330 |
T |
|
| Q |
611 |
actt |
614 |
Q |
| |
|
|||| |
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|
| T |
44080331 |
actt |
44080334 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #7
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 385 - 424
Target Start/End: Original strand, 44067773 - 44067812
Alignment:
| Q |
385 |
aaaattgatgaacgatttcaagtctctaagaattgataca |
424 |
Q |
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||||||||||||| |||||||||||||||||||||||||| |
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| T |
44067773 |
aaaattgatgaacaatttcaagtctctaagaattgataca |
44067812 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #8
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 385 - 424
Target Start/End: Original strand, 44079789 - 44079828
Alignment:
| Q |
385 |
aaaattgatgaacgatttcaagtctctaagaattgataca |
424 |
Q |
| |
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|||||||||||||||||||||| ||||||||||||||||| |
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| T |
44079789 |
aaaattgatgaacgatttcaagactctaagaattgataca |
44079828 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #9
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 560 - 614
Target Start/End: Original strand, 44088485 - 44088538
Alignment:
| Q |
560 |
attgctttctaataaagtgcattgttttcttattgatattgtttactacatactt |
614 |
Q |
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|||||||| ||||||||||| |||||||||||||||||| |||||| |||||||| |
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| T |
44088485 |
attgctttttaataaagtgc-ttgttttcttattgatatggtttacgacatactt |
44088538 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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