View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20654_low_40 (Length: 237)
Name: NF20654_low_40
Description: NF20654
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20654_low_40 |
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Alignment Details
Target: chr7 (Bit Score: 210; Significance: 1e-115; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 210; E-Value: 1e-115
Query Start/End: Original strand, 1 - 222
Target Start/End: Complemental strand, 30115791 - 30115570
Alignment:
| Q |
1 |
taaaaagctttgccatttctccatttccatatgatgataacttctcttgtaacaagtaaccaccgttttgcctgaataacttttccttacgaatactcgc |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
30115791 |
taaaaagctttgccatttctccatttccatatgatgataacttctcttgtaacaagtaaccaccgttttgcctgaataacttttccttacgaatactcgc |
30115692 |
T |
|
| Q |
101 |
tctccttttctttatgtattgatataacctgtaactaagcagaaacaataccagaaagcctgcaccaatgccaacacctgtaaatacataaagacatttt |
200 |
Q |
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|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| ||||||||||||||||||| |
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| T |
30115691 |
tctctttttctttatgtattgatataacctgtaactaagcagaaacaataccagaaagcctgcaccaataccaacacctgcaaatacataaagacatttt |
30115592 |
T |
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| Q |
201 |
caaaattgaagggagaagcaag |
222 |
Q |
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|||||||||||||||||||||| |
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| T |
30115591 |
caaaattgaagggagaagcaag |
30115570 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 107; E-Value: 9e-54
Query Start/End: Original strand, 1 - 127
Target Start/End: Complemental strand, 30105700 - 30105574
Alignment:
| Q |
1 |
taaaaagctttgccatttctccatttccatatgatgataacttctcttgtaacaagtaaccaccgttttgcctgaataacttttccttacgaatactcgc |
100 |
Q |
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|
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |||| || |
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| T |
30105700 |
taaaaagctttgccatttctccatttccataagatgataacttctcttgtaacaagtaaccaccgttttgcctgaataacttttccttatgagtacttgc |
30105601 |
T |
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| Q |
101 |
tctccttttctttatgtattgatataa |
127 |
Q |
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||||||||||||||||| ||||||||| |
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| T |
30105600 |
tctccttttctttatgtgttgatataa |
30105574 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 42 - 98
Target Start/End: Complemental strand, 40961564 - 40961508
Alignment:
| Q |
42 |
ttctcttgtaacaagtaaccaccgttttgcctgaataacttttccttacgaatactc |
98 |
Q |
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||||||||||||||||| ||||| ||||||| ||| ||| |||||||| ||| |||| |
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| T |
40961564 |
ttctcttgtaacaagtagccaccattttgccagaacaacatttccttaagaaaactc |
40961508 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 1 - 96
Target Start/End: Original strand, 21428328 - 21428424
Alignment:
| Q |
1 |
taaaaagctttgccatttctccatttccatatgatgataacttctcttgtaacaagtaacc-accgttttgcctgaataacttttccttacgaatac |
96 |
Q |
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||||||||||||| |||||||| |||||||| ||||||||||||| ||||||||| || || | ||||||||||||| |||||||| | |||||| |
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| T |
21428328 |
taaaaagctttgctatttctccgtttccataagatgataacttctattgtaacaactagccttacattttgcctgaatagcttttcctgatgaatac |
21428424 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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