View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20654_low_6 (Length: 586)

Name: NF20654_low_6
Description: NF20654
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20654_low_6
NF20654_low_6
[»] chr4 (3 HSPs)
chr4 (108-574)||(34344084-34344552)
chr4 (242-311)||(18912932-18913001)
chr4 (450-519)||(18913128-18913197)
[»] chr6 (1 HSPs)
chr6 (107-569)||(3017805-3018260)
[»] chr5 (1 HSPs)
chr5 (107-574)||(37278276-37278737)
[»] chr7 (3 HSPs)
chr7 (108-383)||(46419943-46420196)
chr7 (474-574)||(46420229-46420329)
chr7 (128-177)||(41201843-41201892)
[»] chr3 (5 HSPs)
chr3 (128-177)||(23702340-23702389)
chr3 (128-177)||(23720796-23720845)
chr3 (128-177)||(23739252-23739301)
chr3 (128-177)||(18554392-18554441)
chr3 (105-146)||(47165460-47165501)
[»] chr8 (2 HSPs)
chr8 (126-178)||(44462732-44462784)
chr8 (126-178)||(44470263-44470315)


Alignment Details
Target: chr4 (Bit Score: 314; Significance: 1e-177; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 314; E-Value: 1e-177
Query Start/End: Original strand, 108 - 574
Target Start/End: Complemental strand, 34344552 - 34344084
Alignment:
Q  108 cactacaagaaatctgttcatttgccagggattttgacaaggcctggaagccccaggcaaattttccaggagcaaagccaggggacgtccctgggaaaat 207  Q
    |||||||||||||||||||||||| |||||||||||||||||||| ||| |||| ||||||||| |||||||||||||||||||||||||||||||||||    
T  34344552 cactacaagaaatctgttcatttgtcagggattttgacaaggccttgaaacccctggcaaatttcccaggagcaaagccaggggacgtccctgggaaaat 34344453  T
Q  208 gacttcagaaaaagtgggacactgttcacgtaaaacaggggtttgaccctgtcaaaatgaaacaacccctggcaaattgcaagcgggaaaattgaaattg 307  Q
    |||||||| ||||||||||||||||||||||||||||||||||| |||||| ||||||||||||||||| |||||||||||||||||||| ||||||||     
T  34344452 gacttcaggaaaagtgggacactgttcacgtaaaacaggggtttaaccctggcaaaatgaaacaaccccgggcaaattgcaagcgggaaagttgaaattt 34344353  T
Q  308 aaattgagacatgagcacatgggagtggcagagagtacagaccatttgtttactttttcactcctttattacttaannnnnnnnnnnnnattgaaacaaa 407  Q
    ||||||||||| ||||| |||| |||||||||||||||||||||||||||||||||||||||  |||||| |||||             |||||||||||    
T  34344352 aaattgagacaagagcagatggaagtggcagagagtacagaccatttgtttactttttcactattttattgcttaatttttatttttttattgaaacaaa 34344253  T
Q  408 tacccaccacacacgttatctttccttca--nnnnnnnggattcattgatttggtggaccatacaaatacacacatttcaacattttattttatcacttg 505  Q
    || |||| |||||||||||||||||||||         |||||||||||||||||||||||||||||||||||||||  |||||||||||||||||||||    
T  34344252 tatccacaacacacgttatctttccttcatttttttttggattcattgatttggtggaccatacaaatacacacattagaacattttattttatcacttg 34344153  T
Q  506 ttatctctccaaagtccaaagaacacaagtccaaaactcataaagcttaccattcttccttcttccttc 574  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  34344152 ttatctctccaaagtccaaagaacacaagtccaaaactcataaagcttaccattcttccttcttccttc 34344084  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 242 - 311
Target Start/End: Original strand, 18912932 - 18913001
Alignment:
Q  242 acaggggtttgaccctgtcaaaatgaaacaacccctggcaaattgcaagcgggaaaattgaaattgaaat 311  Q
    ||||||||||| ||||  ||||| |||||||||||||| |||||||||||||||||||||||||| ||||    
T  18912932 acaggggtttgtccctcacaaaaggaaacaacccctggtaaattgcaagcgggaaaattgaaattcaaat 18913001  T

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Target: chr4; HSP #3
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 450 - 519
Target Start/End: Original strand, 18913128 - 18913197
Alignment:
Q  450 attgatttggtggaccatacaaatacacacatttcaacattttattttatcacttgttatctctccaaag 519  Q
    ||||| |||||||||| |||||||||||| ||  |||| || | ||||| ||||||||||||||||||||    
T  18913128 attgagttggtggaccttacaaatacacatatcacaaccttatcttttaccacttgttatctctccaaag 18913197  T

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Target: chr6 (Bit Score: 309; Significance: 1e-174; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 309; E-Value: 1e-174
Query Start/End: Original strand, 107 - 569
Target Start/End: Complemental strand, 3018260 - 3017805
Alignment:
Q  107 acactacaagaaatctgttcatttgccagggattttgacaaggcctggaagccccaggcaaattttccaggagcaaagccaggggacgtccctgggaaaa 206  Q
    |||||||||||||||||||||||||||||||||||||||||||||| |||||||| || |||||| ||||||||| ||||||||||||||| ||||||||    
T  3018260 acactacaagaaatctgttcatttgccagggattttgacaaggccttgaagcccctggaaaatttcccaggagcagagccaggggacgtcc-tgggaaaa 3018162  T
Q  207 tgacttcagaaaaagtgggacactgttcacgtaaaacaggggtttgaccctgtcaaaatgaaacaacccctggcaaattgcaagcgggaaaattgaaatt 306  Q
    ||||||||||||||||||||||||||||| |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |    
T  3018161 tgacttcagaaaaagtgggacactgttcatgtaaaacaggggtttgaccctggcaaaatgaaacaacccctggcaaattgcaagcgggaaaattgaaact 3018062  T
Q  307 gaaattgagacatgagcacatgggagtggcagagagtacagaccatttgtttactttttcactcctttattacttaannnnnnnnnnnnnattgaaacaa 406  Q
     ||||||||||||||||||||||||||||||||||||||        ||||||||||||||||||||||||||||||             ||||||||||    
T  3018061 taaattgagacatgagcacatgggagtggcagagagtac--------tgtttactttttcactcctttattacttaatttttatttttttattgaaacaa 3017970  T
Q  407 atacccaccacacacgttatctttccttca--nnnnnnnggattcattgatttggtggaccatacaaatacacacatttcaacattttattttatcactt 504  Q
    ||||||||||||||| ||||||||||||||          |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||    
T  3017969 atacccaccacacacattatctttccttcattttttttttgattcattgatttggtggaccatacaaatacacacattacaacattttattttatcactt 3017870  T
Q  505 gttatctctccaaagtccaaagaacacaagtccaaaactcataaagcttaccattcttccttctt 569  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  3017869 gttatctctccaaagtccaaagaacacaagtccaaaactcataaagcttaccattcttccttctt 3017805  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 228; Significance: 1e-125; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 228; E-Value: 1e-125
Query Start/End: Original strand, 107 - 574
Target Start/End: Original strand, 37278276 - 37278737
Alignment:
Q  107 acactacaagaaatctgttcatttgccagggattttgacaaggcctggaagccccaggcaaattttccaggagcaaagccaggggacgtccctgggaaaa 206  Q
    |||||||||||||| ||| ||||||||| ||||||||||| ||||| ||| |||| | ||||||||| |||||||||||||||||| | |||||||||||    
T  37278276 acactacaagaaatttgtccatttgccaaggattttgacagggccttgaaacccctgacaaattttcgaggagcaaagccaggggatgaccctgggaaaa 37278375  T
Q  207 tgacttcagaaaaagtgggacactgttcacgtaaaacaggggtttgaccctgtcaaaatgaaacaacccctggcaaattgcaagcgggaaaattgaaatt 306  Q
     |||||||||||||||| ||||| ||||||||||||||||||||| |||||| ||||| ||||||| || |||||| ||  |||||||||||||||||||    
T  37278376 cgacttcagaaaaagtgagacacagttcacgtaaaacaggggtttaaccctggcaaaaagaaacaatccttggcaatttataagcgggaaaattgaaatt 37278475  T
Q  307 gaaattgagacatgagcacatgggagtggcagagagtacagaccatttgtttactttttcactcctttattacttaannnnnnnnnnnnnattgaaacaa 406  Q
     |||| |||||| |||||||||||||||||||||||| || ||||||||||||||||||||||| |||||| ||||              ||||||||||    
T  37278476 taaatagagacaagagcacatgggagtggcagagagtgcaaaccatttgtttactttttcactcttttattgctta------ttttttttattgaaacaa 37278569  T
Q  407 atacccaccacacac-gttatctttccttcannnnnnnggattcattgatttggtggaccatacaaatacacacatttcaacattttattttatcacttg 505  Q
    ||||  || |||| | |||||||||||||||       | || ||||||||||||||| |||||||||||||||||| ||||||||| ||||||||||||    
T  37278570 atacaaacaacacgcggttatctttccttca-ttttttgtatccattgatttggtggatcatacaaatacacacattacaacattttcttttatcacttg 37278668  T
Q  506 ttatctctccaaagtccaaagaacacaagtccaaaactcataaagcttaccattcttccttcttccttc 574  Q
    |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |||||||    
T  37278669 ttatctctccaaagtccaaagaacacaagtccaaaactcataaagcttgccattcttcctttttccttc 37278737  T

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Target: chr7 (Bit Score: 152; Significance: 3e-80; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 152; E-Value: 3e-80
Query Start/End: Original strand, 108 - 383
Target Start/End: Original strand, 46419943 - 46420196
Alignment:
Q  108 cactacaagaaatctgttcatttgccagggattttgacaaggcctggaagccccaggcaaattttccaggagcaaagccaggggacgtccctgggaaaat 207  Q
    |||||||||||||||||||||||| |||||||||||||||||||| ||| |||| ||||||||| ||| |||||||| ||||||||||||||||||||||    
T  46419943 cactacaagaaatctgttcatttgtcagggattttgacaaggccttgaaacccctggcaaatttcccaagagcaaagtcaggggacgtccctgggaaaat 46420042  T
Q  208 gacttcagaaaaagtgggacactgttcacgtaaaacaggggtttgaccctgtcaaaatgaaacaacccctggcaaattgcaagcgggaaaattgaaattg 307  Q
    |||||||| ||||||||||||||||||||||||||||||||||||||                    ||||||||||||||||||| ||||||||||||     
T  46420043 gacttcaggaaaagtgggacactgttcacgtaaaacaggggtttgac--------------------cctggcaaattgcaagcggaaaaattgaaattt 46420122  T
Q  308 aaattgagacatgagcacatgggagtggcagagagtacagaccatttgtttactttttcactcctttattacttaa 383  Q
    |||||||||||||||||||||||||||||  |||||||| |||||||||||||||||||||||||||||| |||||    
T  46420123 aaattgagacatgagcacatgggagtggc--agagtacataccatttgtttactttttcactcctttattgcttaa 46420196  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 97; E-Value: 2e-47
Query Start/End: Original strand, 474 - 574
Target Start/End: Original strand, 46420229 - 46420329
Alignment:
Q  474 acacacatttcaacattttattttatcacttgttatctctccaaagtccaaagaacacaagtccaaaactcataaagcttaccattcttccttcttcctt 573  Q
    ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  46420229 acacacattacaacattttattttatcacttgttatctctccaaagtccaaagaacacaagtccaaaactcataaagcttaccattcttccttcttcctt 46420328  T
Q  574 c 574  Q
    |    
T  46420329 c 46420329  T

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Target: chr7; HSP #3
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 128 - 177
Target Start/End: Complemental strand, 41201892 - 41201843
Alignment:
Q  128 tttgccagggattttgacaaggcctggaagccccaggcaaattttccagg 177  Q
    ||||||||||||||||||||||  | |||||||| |||||||||||||||    
T  41201892 tttgccagggattttgacaagggtttgaagcccctggcaaattttccagg 41201843  T

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Target: chr3 (Bit Score: 34; Significance: 0.0000000009; HSPs: 5)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 128 - 177
Target Start/End: Original strand, 23702340 - 23702389
Alignment:
Q  128 tttgccagggattttgacaaggcctggaagccccaggcaaattttccagg 177  Q
    ||||||||||||||||||||||  | |||||||| |||||||||||||||    
T  23702340 tttgccagggattttgacaagggtttgaagcccctggcaaattttccagg 23702389  T

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Target: chr3; HSP #2
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 128 - 177
Target Start/End: Original strand, 23720796 - 23720845
Alignment:
Q  128 tttgccagggattttgacaaggcctggaagccccaggcaaattttccagg 177  Q
    ||||||||||||||||||||||  | |||||||| |||||||||||||||    
T  23720796 tttgccagggattttgacaagggtttgaagcccctggcaaattttccagg 23720845  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 128 - 177
Target Start/End: Original strand, 23739252 - 23739301
Alignment:
Q  128 tttgccagggattttgacaaggcctggaagccccaggcaaattttccagg 177  Q
    ||||||||||||||||||||||  | |||||||| |||||||||||||||    
T  23739252 tttgccagggattttgacaagggtttgaagcccctggcaaattttccagg 23739301  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 128 - 177
Target Start/End: Complemental strand, 18554441 - 18554392
Alignment:
Q  128 tttgccagggattttgacaaggcctggaagccccaggcaaattttccagg 177  Q
    ||||||||||||||||||||||  | |||||||| ||||||||| |||||    
T  18554441 tttgccagggattttgacaagggtttgaagcccctggcaaatttgccagg 18554392  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 105 - 146
Target Start/End: Original strand, 47165460 - 47165501
Alignment:
Q  105 caacactacaagaaatctgttcatttgccagggattttgaca 146  Q
    |||||||||||||||| || |||||||| |||||||||||||    
T  47165460 caacactacaagaaatatgctcatttgctagggattttgaca 47165501  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 29; Significance: 0.0000008; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 126 - 178
Target Start/End: Original strand, 44462732 - 44462784
Alignment:
Q  126 catttgccagggattttgacaaggcctggaagccccaggcaaattttccagga 178  Q
    |||||||||||||||||||||||| |  ||| |||| || |||||||||||||    
T  44462732 catttgccagggattttgacaaggacatgaaacccctgggaaattttccagga 44462784  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 126 - 178
Target Start/End: Original strand, 44470263 - 44470315
Alignment:
Q  126 catttgccagggattttgacaaggcctggaagccccaggcaaattttccagga 178  Q
    |||||||||||||||||||||||| |  ||| |||| || |||||||||||||    
T  44470263 catttgccagggattttgacaaggacatgaaacccctgggaaattttccagga 44470315  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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