View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20654_low_8 (Length: 525)

Name: NF20654_low_8
Description: NF20654
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20654_low_8
NF20654_low_8
[»] chr2 (12 HSPs)
chr2 (51-350)||(15527990-15528288)
chr2 (51-176)||(15538768-15538893)
chr2 (317-468)||(18276339-18276490)
chr2 (188-259)||(15738702-15738773)
chr2 (459-509)||(18277174-18277224)
chr2 (1-51)||(21629762-21629812)
chr2 (1-53)||(10445681-10445734)
chr2 (1-51)||(3491563-3491614)
chr2 (2-51)||(17865014-17865064)
chr2 (2-51)||(20522031-20522081)
chr2 (1-53)||(39482744-39482797)
chr2 (1-53)||(35397323-35397374)
[»] scaffold0916 (1 HSPs)
scaffold0916 (188-296)||(207-315)
[»] chr4 (13 HSPs)
chr4 (181-259)||(55741462-55741540)
chr4 (188-281)||(17482679-17482772)
chr4 (1-48)||(1983534-1983581)
chr4 (1-51)||(5112052-5112102)
chr4 (1-51)||(34496058-34496108)
chr4 (4-52)||(31985871-31985920)
chr4 (1-51)||(10047190-10047241)
chr4 (1-51)||(25862257-25862308)
chr4 (1-51)||(28468762-28468813)
chr4 (21-52)||(42599833-42599864)
chr4 (219-281)||(49815750-49815812)
chr4 (221-281)||(21413190-21413250)
chr4 (1-52)||(24333620-24333672)
[»] chr1 (7 HSPs)
chr1 (188-281)||(36791512-36791605)
chr1 (1-51)||(13604859-13604909)
chr1 (181-281)||(16082923-16083023)
chr1 (241-281)||(31869974-31870014)
chr1 (1-51)||(775483-775534)
chr1 (181-260)||(16077096-16077174)
chr1 (241-281)||(13287560-13287600)
[»] chr7 (14 HSPs)
chr7 (195-281)||(13953447-13953533)
chr7 (1-53)||(2580197-2580249)
chr7 (188-281)||(13954072-13954165)
chr7 (1-53)||(3047061-3047113)
chr7 (1-53)||(9185398-9185451)
chr7 (1-52)||(18408575-18408627)
chr7 (1-51)||(46516546-46516597)
chr7 (1-51)||(28617463-28617512)
chr7 (1-53)||(18413451-18413504)
chr7 (1-53)||(20283898-20283951)
chr7 (1-52)||(2647962-2648014)
chr7 (229-281)||(3614433-3614485)
chr7 (1-48)||(4796905-4796953)
chr7 (301-341)||(5235931-5235971)
[»] chr5 (8 HSPs)
chr5 (188-259)||(7362728-7362800)
chr5 (1-51)||(36932585-36932635)
chr5 (1-52)||(42127644-42127696)
chr5 (213-259)||(25051846-25051892)
chr5 (1-53)||(15464341-15464394)
chr5 (1-51)||(19588557-19588608)
chr5 (1-53)||(42126642-42126695)
chr5 (1-52)||(10281672-10281724)
[»] scaffold0006 (1 HSPs)
scaffold0006 (1-51)||(133516-133566)
[»] chr8 (11 HSPs)
chr8 (207-259)||(18701657-18701709)
chr8 (211-280)||(34587666-34587735)
chr8 (1-53)||(6813487-6813539)
chr8 (1-53)||(23799813-23799865)
chr8 (1-51)||(28307368-28307418)
chr8 (188-259)||(775602-775674)
chr8 (188-259)||(781256-781328)
chr8 (1-52)||(26287712-26287764)
chr8 (1-52)||(26312963-26313015)
chr8 (1-52)||(31071464-31071517)
chr8 (1-53)||(26300956-26301009)
[»] chr3 (11 HSPs)
chr3 (1-51)||(27986670-27986720)
chr3 (2-52)||(33386893-33386943)
chr3 (1-51)||(1305761-1305812)
chr3 (1-51)||(18554512-18554563)
chr3 (1-52)||(27452769-27452820)
chr3 (1-51)||(32143133-32143184)
chr3 (235-281)||(9557441-9557487)
chr3 (1-49)||(1309668-1309717)
chr3 (1-53)||(3323788-3323841)
chr3 (1-53)||(6794937-6794990)
chr3 (235-280)||(29774794-29774839)
[»] chr6 (2 HSPs)
chr6 (1-51)||(5572831-5572882)
chr6 (21-51)||(10077421-10077451)
[»] scaffold0176 (1 HSPs)
scaffold0176 (1-53)||(17075-17128)


Alignment Details
Target: chr2 (Bit Score: 240; Significance: 1e-133; HSPs: 12)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 240; E-Value: 1e-133
Query Start/End: Original strand, 51 - 350
Target Start/End: Original strand, 15527990 - 15528288
Alignment:
Q  51 aatggtgtatccctttagcaaaaagaaatgcaagtaccgaccattattattgttttggagtgggcttcggccaatatcgccggctcaatatacagcggcc 150  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||    
T  15527990 aatggtgtatccctttagcaaaaagaaatgcaagtaccgaccattattattattttggagtgggcttcggccaatatcgccggctcaatatacagcggcc 15528089  T
Q  151 caataaccactactacaggtagaaaagatcattgattttctgacttcaaaaacgtcatattgacacatgaaaattccttaaaagccccccgcggtagtta 250  Q
    |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||  ||||||||||    
T  15528090 caataaccactactacaggtaggaaagatcattgattttctgacttcaaaaacgtcatattgacacatgaaaatttcttaaaagcccctagcggtagtta 15528189  T
Q  251 actaccgtttgtcaaaccggcagcagttaaccatcgttggcctcaatgtttgtgtcgtgtccaatctccgtgtttgtatccgtgcttcatatcttttagt 350  Q
    |||||| ||||||||||||||||||  ||||  ||| |||||||| ||||||||||||||||||||||||||||||||||| ||||||||| ||||||||    
T  15528190 actaccatttgtcaaaccggcagca-ataactgtcgctggcctcagtgtttgtgtcgtgtccaatctccgtgtttgtatccctgcttcatagcttttagt 15528288  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 102; E-Value: 2e-50
Query Start/End: Original strand, 51 - 176
Target Start/End: Original strand, 15538768 - 15538893
Alignment:
Q  51 aatggtgtatccctttagcaaaaagaaatgcaagtaccgaccattattattgttttggagtgggcttcggccaatatcgccggctcaatatacagcggcc 150  Q
    |||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||| ||||    
T  15538768 aatggtatatcccttcagcaaaaagaaatgcaagtaccgaccattattattgttttggactgggcttcggccaatattgccggctcaatatacagtggcc 15538867  T
Q  151 caataaccactactacaggtagaaaa 176  Q
    ||||||||||||||| ||||||||||    
T  15538868 caataaccactactataggtagaaaa 15538893  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 78; E-Value: 4e-36
Query Start/End: Original strand, 317 - 468
Target Start/End: Complemental strand, 18276490 - 18276339
Alignment:
Q  317 tccgtgtttgtatccgtgcttcatatcttttagtggtagattgataagcaaagctgttttttagttgaagatnnnnnnnnnnnnnnnnnnnnnngcttaa 416  Q
    ||||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||                      ||||||    
T  18276490 tccgtgtctgtatccgtgcttcatatcttttagtggtagattgataagcaaagctattttttagttgaagatgaaaaagaaagaagaaaaaaaagcttaa 18276391  T
Q  417 cataatgttggaatcaaagaaagattgttttataagtgcatacaaccaatca 468  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  18276390 cataatgttggaatcaaagaaagattgttttataagtgcatacaaccaatca 18276339  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 188 - 259
Target Start/End: Complemental strand, 15738773 - 15738702
Alignment:
Q  188 ttctgacttcaaaaacgtcatattgacacatgaaaattccttaaaagccccccgcggtagttaactaccgtt 259  Q
    |||| ||||||||||| | ||||| ||||||||||||||||||||||||| | |||||||||||||||||||    
T  15738773 ttctaacttcaaaaacatgatattaacacatgaaaattccttaaaagccctcagcggtagttaactaccgtt 15738702  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 459 - 509
Target Start/End: Original strand, 18277174 - 18277224
Alignment:
Q  459 caaccaatcaaatcgaagaccgttcgagctcaaaccttcttccaccacttt 509  Q
    ||||| |||||||||||||||||||||||||||||||||||||||||||||    
T  18277174 caaccgatcaaatcgaagaccgttcgagctcaaaccttcttccaccacttt 18277224  T

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Target: chr2; HSP #6
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 1 - 51
Target Start/End: Complemental strand, 21629812 - 21629762
Alignment:
Q  1 gctccacacatatttgtttacattagtgtgattttgtccgaattcacaaca 51  Q
    ||||||||||| ||||||| |||| ||||||||||||||||||||||||||    
T  21629812 gctccacacatctttgttttcattggtgtgattttgtccgaattcacaaca 21629762  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 1 - 53
Target Start/End: Original strand, 10445681 - 10445734
Alignment:
Q  1 gctccacacatatttgttta-cattagtgtgattttgtccgaattcacaacaat 53  Q
    ||||||||||| |||||||  |||| ||||||||||||||||||||||||||||    
T  10445681 gctccacacatctttgtttttcattggtgtgattttgtccgaattcacaacaat 10445734  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 1 - 51
Target Start/End: Complemental strand, 3491614 - 3491563
Alignment:
Q  1 gctccacacatatttgtttacattagtgtga-ttttgtccgaattcacaaca 51  Q
    ||||||||||| |||||||||||| |||||| |||| |||||||||||||||    
T  3491614 gctccacacatctttgtttacattggtgtgagttttatccgaattcacaaca 3491563  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 2 - 51
Target Start/End: Complemental strand, 17865064 - 17865014
Alignment:
Q  2 ctccacacatatttgtt-tacattagtgtgattttgtccgaattcacaaca 51  Q
    |||||||||| |||||| | |||| ||||||||||||||||||||||||||    
T  17865064 ctccacacatttttgttattcattggtgtgattttgtccgaattcacaaca 17865014  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 2 - 51
Target Start/End: Complemental strand, 20522081 - 20522031
Alignment:
Q  2 ctccacacatatttgtt-tacattagtgtgattttgtccgaattcacaaca 51  Q
    |||||||||| |||||| | |||| ||||||||||||||||||||||||||    
T  20522081 ctccacacatctttgttattcattggtgtgattttgtccgaattcacaaca 20522031  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 1 - 53
Target Start/End: Complemental strand, 39482797 - 39482744
Alignment:
Q  1 gctccacacatatttgtt-tacattagtgtgattttgtccgaattcacaacaat 53  Q
    ||||||||||| |||||| | |||| ||||||||||||| ||||||||||||||    
T  39482797 gctccacacatctttgttattcatttgtgtgattttgtctgaattcacaacaat 39482744  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 1 - 53
Target Start/End: Complemental strand, 35397374 - 35397323
Alignment:
Q  1 gctccacacatatttgtttacattagtgtgattttgtccgaattcacaacaat 53  Q
    ||||| ||||| ||||||| |||| ||||| ||||||||||||||||||||||    
T  35397374 gctccgcacatctttgttt-cattggtgtgtttttgtccgaattcacaacaat 35397323  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0916 (Bit Score: 69; Significance: 1e-30; HSPs: 1)
Name: scaffold0916
Description:

Target: scaffold0916; HSP #1
Raw Score: 69; E-Value: 1e-30
Query Start/End: Original strand, 188 - 296
Target Start/End: Original strand, 207 - 315
Alignment:
Q  188 ttctgacttcaaaaacgtcatattgacacatgaaaattccttaaaagccccccgcggtagttaactaccgtttgtcaaaccggcagcagttaaccatcgt 287  Q
    ||||| |||||||||||||||||| ||||||| ||||||||||||| |||||  |||||||||||||||||||| |||||||||||||||||||   |||    
T  207 ttctgtcttcaaaaacgtcatattaacacatggaaattccttaaaatcccccaacggtagttaactaccgtttgccaaaccggcagcagttaactgccgt 306  T
Q  288 tggcctcaa 296  Q
    |||||||||    
T  307 tggcctcaa 315  T

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Target: chr4 (Bit Score: 59; Significance: 9e-25; HSPs: 13)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 59; E-Value: 9e-25
Query Start/End: Original strand, 181 - 259
Target Start/End: Complemental strand, 55741540 - 55741462
Alignment:
Q  181 attgattttctgacttcaaaaacgtcatattgacacatgaaaattccttaaaagccccccgcggtagttaactaccgtt 259  Q
    |||| |||||||||||||||||||||||||||||||||| ||| ||| ||||||||||| |||||||||||||||||||    
T  55741540 attgcttttctgacttcaaaaacgtcatattgacacatggaaagtccataaaagcccccagcggtagttaactaccgtt 55741462  T

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Target: chr4; HSP #2
Raw Score: 58; E-Value: 4e-24
Query Start/End: Original strand, 188 - 281
Target Start/End: Original strand, 17482679 - 17482772
Alignment:
Q  188 ttctgacttcaaaaacgtcatattgacacatgaaaattccttaaaagccccccgcggtagttaactaccgtttgtcaaaccggcagcagttaac 281  Q
    |||||||||||||||||||||||||||||| |||| || | ||||||||||| ||||||||||||||||||| | | |||||| ||||||||||    
T  17482679 ttctgacttcaaaaacgtcatattgacacaagaaatttacgtaaaagcccccagcggtagttaactaccgttaggctaaccggtagcagttaac 17482772  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 1 - 48
Target Start/End: Original strand, 1983534 - 1983581
Alignment:
Q  1 gctccacacatatttgtttacattagtgtgattttgtccgaattcaca 48  Q
    ||||||||||| ||||||| |||| |||||||||||||||||||||||    
T  1983534 gctccacacatctttgttttcatttgtgtgattttgtccgaattcaca 1983581  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 1 - 51
Target Start/End: Complemental strand, 5112102 - 5112052
Alignment:
Q  1 gctccacacatatttgtttacattagtgtgattttgtccgaattcacaaca 51  Q
    ||||||||||| ||||||| |||| |||||||||| |||||||||||||||    
T  5112102 gctccacacatttttgttttcattggtgtgattttatccgaattcacaaca 5112052  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 1 - 51
Target Start/End: Original strand, 34496058 - 34496108
Alignment:
Q  1 gctccacacatatttgtttacattagtgtgattttgtccgaattcacaaca 51  Q
    ||||||||||| ||||||| |||| ||||||||||| ||||||||||||||    
T  34496058 gctccacacatctttgttttcattggtgtgattttgaccgaattcacaaca 34496108  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 4 - 52
Target Start/End: Original strand, 31985871 - 31985920
Alignment:
Q  4 ccacacatatttgtttacattagtgtga-ttttgtccgaattcacaacaa 52  Q
    |||||||| |||||||||||| |||||| |||||||||||||||||||||    
T  31985871 ccacacatctttgtttacattggtgtgagttttgtccgaattcacaacaa 31985920  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 1 - 51
Target Start/End: Complemental strand, 10047241 - 10047190
Alignment:
Q  1 gctccacacatatttgtt-tacattagtgtgattttgtccgaattcacaaca 51  Q
    ||||||||||| |||||| | |||| ||||||||||||||||||||||||||    
T  10047241 gctccacacatttttgttattcattggtgtgattttgtccgaattcacaaca 10047190  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 1 - 51
Target Start/End: Original strand, 25862257 - 25862308
Alignment:
Q  1 gctccacacatatttgtt-tacattagtgtgattttgtccgaattcacaaca 51  Q
    ||||||||||| |||||| | |||| ||||||||||||||||||||||||||    
T  25862257 gctccacacatctttgttattcattggtgtgattttgtccgaattcacaaca 25862308  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 1 - 51
Target Start/End: Original strand, 28468762 - 28468813
Alignment:
Q  1 gctccacacatatttgtttacattagtgtga-ttttgtccgaattcacaaca 51  Q
    ||||||||||| |||||||||||| |||||| |||| |||||||||||||||    
T  28468762 gctccacacatctttgtttacattggtgtgagttttatccgaattcacaaca 28468813  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 21 - 52
Target Start/End: Original strand, 42599833 - 42599864
Alignment:
Q  21 cattagtgtgattttgtccgaattcacaacaa 52  Q
    ||||||||||||||||||||||||||||||||    
T  42599833 cattagtgtgattttgtccgaattcacaacaa 42599864  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 219 - 281
Target Start/End: Original strand, 49815750 - 49815812
Alignment:
Q  219 gaaaattccttaaaagccccccgcggtagttaactaccgtttgtcaaaccggcagcagttaac 281  Q
    ||||||| | ||||||||| |  |||||||||||||||||| | | |||||||||||||||||    
T  49815750 gaaaattacgtaaaagccctcaacggtagttaactaccgttgggctaaccggcagcagttaac 49815812  T

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Target: chr4; HSP #12
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 221 - 281
Target Start/End: Complemental strand, 21413250 - 21413190
Alignment:
Q  221 aaattccttaaaagccccccgcggtagttaactaccgtttgtcaaaccggcagcagttaac 281  Q
    |||||||| |||||||||| | |||||||||||||| ||   ||| |||||||||||||||    
T  21413250 aaattcctaaaaagcccccagtggtagttaactaccattcaacaatccggcagcagttaac 21413190  T

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Target: chr4; HSP #13
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 1 - 52
Target Start/End: Complemental strand, 24333672 - 24333620
Alignment:
Q  1 gctccacacatatttgtt-tacattagtgtgattttgtccgaattcacaacaa 52  Q
    ||||||||||| |||||| | |||| |||||||||||| ||||||||||||||    
T  24333672 gctccacacatctttgttattcattggtgtgattttgtacgaattcacaacaa 24333620  T

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Target: chr1 (Bit Score: 50; Significance: 2e-19; HSPs: 7)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 188 - 281
Target Start/End: Complemental strand, 36791605 - 36791512
Alignment:
Q  188 ttctgacttcaaaaacgtcatattgacacatgaaaattccttaaaagccccccgcggtagttaactaccgtttgtcaaaccggcagcagttaac 281  Q
    |||||||||||||||||||||||||||||| ||||||| | | | || |||| || |||||||||||||||| | | |||||||||||||||||    
T  36791605 ttctgacttcaaaaacgtcatattgacacaagaaaattaccttatagtccccagccgtagttaactaccgttgggctaaccggcagcagttaac 36791512  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 1 - 51
Target Start/End: Original strand, 13604859 - 13604909
Alignment:
Q  1 gctccacacatatttgtttacattagtgtgattttgtccgaattcacaaca 51  Q
    ||||||||||| |||||||||||| ||||||||||||||||||||||||||    
T  13604859 gctccacacatctttgtttacattggtgtgattttgtccgaattcacaaca 13604909  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 181 - 281
Target Start/End: Complemental strand, 16083023 - 16082923
Alignment:
Q  181 attgattttctgacttcaaaaacgtcatattgacacatgaaaattccttaaaagccccccgcggtagttaactaccgtttgtcaaaccggcagcagttaa 280  Q
    |||| ||||||||| ||||||||||| || | ||||||| ||||| || ||||  ||||  ||||||||||||||||||   ||||||| ||| ||||||    
T  16083023 attgcttttctgacatcaaaaacgtcctaataacacatggaaatttctaaaaaaaccccaacggtagttaactaccgttctgcaaaccgacagtagttaa 16082924  T
Q  281 c 281  Q
    |    
T  16082923 c 16082923  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 241 - 281
Target Start/End: Complemental strand, 31870014 - 31869974
Alignment:
Q  241 gcggtagttaactaccgtttgtcaaaccggcagcagttaac 281  Q
    ||||||||||||||||||||| ||||||||||||| |||||    
T  31870014 gcggtagttaactaccgtttgccaaaccggcagcaattaac 31869974  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 1 - 51
Target Start/End: Complemental strand, 775534 - 775483
Alignment:
Q  1 gctccacacatatttgtt-tacattagtgtgattttgtccgaattcacaaca 51  Q
    ||||||||||| |||||| | |||| ||||||||||||||||||||||||||    
T  775534 gctccacacatctttgttattcattggtgtgattttgtccgaattcacaaca 775483  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 181 - 260
Target Start/End: Original strand, 16077096 - 16077174
Alignment:
Q  181 attgattttctgacttcaaaaacgtcatattgacacatgaaaattccttaaaagccccccgcggtagttaactaccgttt 260  Q
    |||| ||||||||| | ||||||||| || | ||||||| |||||||| ||||||||   ||||||||||||||||||||    
T  16077096 attgcttttctgacat-aaaaacgtcctaataacacatggaaattcctaaaaagcccttagcggtagttaactaccgttt 16077174  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 241 - 281
Target Start/End: Complemental strand, 13287600 - 13287560
Alignment:
Q  241 gcggtagttaactaccgtttgtcaaaccggcagcagttaac 281  Q
    ||||||||||| ||||||| | |||||||||||||||||||    
T  13287600 gcggtagttaattaccgttggacaaaccggcagcagttaac 13287560  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 47; Significance: 1e-17; HSPs: 14)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 195 - 281
Target Start/End: Complemental strand, 13953533 - 13953447
Alignment:
Q  195 ttcaaaaacgtcatattgacacatgaaaattccttaaaagccccccgcggtagttaactaccgtttgtcaaaccggcagcagttaac 281  Q
    ||||||||||||||||||||||||||||| | | ||||| ||||| |||||||||||||||||||   ||||||| || ||||||||    
T  13953533 ttcaaaaacgtcatattgacacatgaaaactacctaaaaacccccagcggtagttaactaccgttctgcaaaccgacatcagttaac 13953447  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 1 - 53
Target Start/End: Complemental strand, 2580249 - 2580197
Alignment:
Q  1 gctccacacatatttgtttacattagtgtgattttgtccgaattcacaacaat 53  Q
    ||||||||||| |||||||||||| ||||||||||||||||||||||||||||    
T  2580249 gctccacacatctttgtttacattggtgtgattttgtccgaattcacaacaat 2580197  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 188 - 281
Target Start/End: Complemental strand, 13954165 - 13954072
Alignment:
Q  188 ttctgacttcaaaaacgtcatattgacacatgaaaattccttaaaagccccccgcggtagttaactaccgtttgtcaaaccggcagcagttaac 281  Q
    |||||||||||||||||  ||||||||||||||||||| | ||||| | ||| ||||||||||| |||||||   ||||||| || ||||||||    
T  13954165 ttctgacttcaaaaacgatatattgacacatgaaaattacctaaaacctcccagcggtagttaattaccgttctgcaaaccgacatcagttaac 13954072  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 1 - 53
Target Start/End: Complemental strand, 3047113 - 3047061
Alignment:
Q  1 gctccacacatatttgtttacattagtgtgattttgtccgaattcacaacaat 53  Q
    ||||||||||| ||||||| |||| ||||||||||||||||||||||||||||    
T  3047113 gctccacacatctttgttttcattggtgtgattttgtccgaattcacaacaat 3047061  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 1 - 53
Target Start/End: Original strand, 9185398 - 9185451
Alignment:
Q  1 gctccacacatatttgttta-cattagtgtgattttgtccgaattcacaacaat 53  Q
    ||||||||||| |||||||  |||||||||||||||| ||||||||||||||||    
T  9185398 gctccacacatctttgtttttcattagtgtgattttgaccgaattcacaacaat 9185451  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 1 - 52
Target Start/End: Complemental strand, 18408627 - 18408575
Alignment:
Q  1 gctccacacatatttgtttacattagtgtga-ttttgtccgaattcacaacaa 52  Q
    ||||||||||| |||||||||||| |||||| |||| ||||||||||||||||    
T  18408627 gctccacacatctttgtttacattggtgtgagttttatccgaattcacaacaa 18408575  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 1 - 51
Target Start/End: Original strand, 46516546 - 46516597
Alignment:
Q  1 gctccacacatatttgtt-tacattagtgtgattttgtccgaattcacaaca 51  Q
    ||||||||||| |||||| | |||| ||||||||||||||||||||||||||    
T  46516546 gctccacacatctttgttattcattggtgtgattttgtccgaattcacaaca 46516597  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 1 - 51
Target Start/End: Original strand, 28617463 - 28617512
Alignment:
Q  1 gctccacacatatttgtttacattagtgtgattttgtccgaattcacaaca 51  Q
    ||||||||||| |||||||  |||| |||||||||||||||||||||||||    
T  28617463 gctccacacatctttgtttg-attaatgtgattttgtccgaattcacaaca 28617512  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 1 - 53
Target Start/End: Complemental strand, 18413504 - 18413451
Alignment:
Q  1 gctccacacatatttgtttacattagtgtga-ttttgtccgaattcacaacaat 53  Q
    ||||| ||||| |||||||||||| |||||| |||| |||||||||||||||||    
T  18413504 gctcctcacatctttgtttacattggtgtgagttttatccgaattcacaacaat 18413451  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 1 - 53
Target Start/End: Complemental strand, 20283951 - 20283898
Alignment:
Q  1 gctccacacatatttgtt-tacattagtgtgattttgtccgaattcacaacaat 53  Q
    ||||||||||| |||||| | |||  ||||||||||||||||||||||||||||    
T  20283951 gctccacacatctttgttattcataggtgtgattttgtccgaattcacaacaat 20283898  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 1 - 52
Target Start/End: Original strand, 2647962 - 2648014
Alignment:
Q  1 gctccacacatatttgtt-tacattagtgtgattttgtccgaattcacaacaa 52  Q
    ||||||||||| |||||| | |||| ||||||||||||| |||||||||||||    
T  2647962 gctccacacatctttgttattcattggtgtgattttgtctgaattcacaacaa 2648014  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 229 - 281
Target Start/End: Original strand, 3614433 - 3614485
Alignment:
Q  229 taaaagccccccgcggtagttaactaccgtttgtcaaaccggcagcagttaac 281  Q
    |||| |||||| |||||||||||||||||||   ||||||||| |||||||||    
T  3614433 taaatgcccccagcggtagttaactaccgttctgcaaaccggcggcagttaac 3614485  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 1 - 48
Target Start/End: Original strand, 4796905 - 4796953
Alignment:
Q  1 gctccacacatatttgtt-tacattagtgtgattttgtccgaattcaca 48  Q
    ||||||||||| |||||| | |||| |||||||||||||||||||||||    
T  4796905 gctccacacatctttgttattcattggtgtgattttgtccgaattcaca 4796953  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 301 - 341
Target Start/End: Complemental strand, 5235971 - 5235931
Alignment:
Q  301 tgtgtcgtgtccaatctccgtgtttgtatccgtgcttcata 341  Q
    ||||||||||||||| ||||| |||||||| ||||||||||    
T  5235971 tgtgtcgtgtccaatgtccgtatttgtatctgtgcttcata 5235931  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 45; Significance: 2e-16; HSPs: 8)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 188 - 259
Target Start/End: Complemental strand, 7362800 - 7362728
Alignment:
Q  188 ttctgacttcaaaaacgtcatattga-cacatgaaaattccttaaaagccccccgcggtagttaactaccgtt 259  Q
    |||| ||||||||||||||||||| | |||||| ||||||||||||||||||| |||| ||||||||||||||    
T  7362800 ttcttacttcaaaaacgtcatattaaacacatggaaattccttaaaagcccccagcggaagttaactaccgtt 7362728  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 1 - 51
Target Start/End: Original strand, 36932585 - 36932635
Alignment:
Q  1 gctccacacatatttgtttacattagtgtgattttgtccgaattcacaaca 51  Q
    ||||||||||| |||||||||||| |||||| |||||||||||||||||||    
T  36932585 gctccacacatctttgtttacattggtgtgagtttgtccgaattcacaaca 36932635  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 1 - 52
Target Start/End: Original strand, 42127644 - 42127696
Alignment:
Q  1 gctccacacatatttgtt-tacattagtgtgattttgtccgaattcacaacaa 52  Q
    ||||||||||| |||||| | ||||||||||||||||||||||||||||||||    
T  42127644 gctccacacatctttgttattcattagtgtgattttgtccgaattcacaacaa 42127696  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 213 - 259
Target Start/End: Original strand, 25051846 - 25051892
Alignment:
Q  213 acacatgaaaattccttaaaagccccccgcggtagttaactaccgtt 259  Q
    ||||||| |||||||  ||||||||||||||||||||||||||||||    
T  25051846 acacatgtaaattccaaaaaagccccccgcggtagttaactaccgtt 25051892  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 1 - 53
Target Start/End: Complemental strand, 15464394 - 15464341
Alignment:
Q  1 gctccacacatatttgtttacattagtgtga-ttttgtccgaattcacaacaat 53  Q
    ||||||||||| |||||||||||| |||||| |||| |||||||||||||||||    
T  15464394 gctccacacatctttgtttacattggtgtgagttttatccgaattcacaacaat 15464341  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 1 - 51
Target Start/End: Complemental strand, 19588608 - 19588557
Alignment:
Q  1 gctccacacatatttgtt-tacattagtgtgattttgtccgaattcacaaca 51  Q
    ||||||||||| |||||| | |||| ||||||||||||||||||||||||||    
T  19588608 gctccacacatctttgttattcattggtgtgattttgtccgaattcacaaca 19588557  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 1 - 53
Target Start/End: Original strand, 42126642 - 42126695
Alignment:
Q  1 gctccacacatatttgtt-tacattagtgtgattttgtccgaattcacaacaat 53  Q
    ||||||||||| |||||| | |||| |||||||||| |||||||||||||||||    
T  42126642 gctccacacatctttgttattcattggtgtgattttatccgaattcacaacaat 42126695  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 1 - 52
Target Start/End: Complemental strand, 10281724 - 10281672
Alignment:
Q  1 gctccacacatatttgtt-tacattagtgtgattttgtccgaattcacaacaa 52  Q
    ||||||||||| |||||| | |||| |||||||||||||| ||||||||||||    
T  10281724 gctccacacatctttgttattcattggtgtgattttgtccaaattcacaacaa 10281672  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0006 (Bit Score: 43; Significance: 0.000000000000003; HSPs: 1)
Name: scaffold0006
Description:

Target: scaffold0006; HSP #1
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 1 - 51
Target Start/End: Original strand, 133516 - 133566
Alignment:
Q  1 gctccacacatatttgtttacattagtgtgattttgtccgaattcacaaca 51  Q
    ||||||||||| |||||||||||| ||||||||||||||||||||||||||    
T  133516 gctccacacatctttgtttacattggtgtgattttgtccgaattcacaaca 133566  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 41; Significance: 0.00000000000005; HSPs: 11)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 207 - 259
Target Start/End: Complemental strand, 18701709 - 18701657
Alignment:
Q  207 atattgacacatgaaaattccttaaaagccccccgcggtagttaactaccgtt 259  Q
    ||||| ||||||||||||||||||||||||| | |||||||||||||||||||    
T  18701709 atattaacacatgaaaattccttaaaagccctcagcggtagttaactaccgtt 18701657  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 211 - 280
Target Start/End: Original strand, 34587666 - 34587735
Alignment:
Q  211 tgacacatgaaaattccttaaaagccccccgcggtagttaactaccgtttgtcaaaccggcagcagttaa 280  Q
    ||||||||||||||| |||||||||| ||  ||||||||||||||||||   ||| ||||||||||||||    
T  34587666 tgacacatgaaaattgcttaaaagcctccaacggtagttaactaccgttcagcaacccggcagcagttaa 34587735  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 1 - 53
Target Start/End: Complemental strand, 6813539 - 6813487
Alignment:
Q  1 gctccacacatatttgtttacattagtgtgattttgtccgaattcacaacaat 53  Q
    |||| |||||| ||||||| |||| ||||||||||||||||||||||||||||    
T  6813539 gctcaacacatctttgttttcattggtgtgattttgtccgaattcacaacaat 6813487  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 1 - 53
Target Start/End: Original strand, 23799813 - 23799865
Alignment:
Q  1 gctccacacatatttgtttacattagtgtgattttgtccgaattcacaacaat 53  Q
    ||||||||||||||| ||| |||| |||||||||||| |||||||||||||||    
T  23799813 gctccacacatattttttttcattggtgtgattttgtacgaattcacaacaat 23799865  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 1 - 51
Target Start/End: Complemental strand, 28307418 - 28307368
Alignment:
Q  1 gctccacacatatttgtttacattagtgtgattttgtccgaattcacaaca 51  Q
    ||||||||||| ||||||| |||| |||||||||| |||||||||||||||    
T  28307418 gctccacacatctttgttttcattggtgtgattttatccgaattcacaaca 28307368  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 188 - 259
Target Start/End: Original strand, 775602 - 775674
Alignment:
Q  188 ttctgacttcaaaaacgtcatattgacacatgaaaattccttaaaagccc-cccgcggtagttaactaccgtt 259  Q
    |||| ||||||||||| ||||||| || |||| |||||||||||||||||  | | |||||||||||||||||    
T  775602 ttcttacttcaaaaacatcatattaacgcatgtaaattccttaaaagcccttcaggggtagttaactaccgtt 775674  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 188 - 259
Target Start/End: Original strand, 781256 - 781328
Alignment:
Q  188 ttctgacttcaaaaacgtcatattgacacatgaaaattccttaaaagccc-cccgcggtagttaactaccgtt 259  Q
    |||| ||||||||||| ||||||| || |||| |||||||||||||||||  | | |||||||||||||||||    
T  781256 ttcttacttcaaaaacatcatattaacgcatgtaaattccttaaaagcccttcaggggtagttaactaccgtt 781328  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 1 - 52
Target Start/End: Complemental strand, 26287764 - 26287712
Alignment:
Q  1 gctccacacatatttgtttacattagtgtga-ttttgtccgaattcacaacaa 52  Q
    ||||||||||| |||||||||||| |||||| |||| ||||||||||||||||    
T  26287764 gctccacacatctttgtttacattggtgtgagttttatccgaattcacaacaa 26287712  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 1 - 52
Target Start/End: Complemental strand, 26313015 - 26312963
Alignment:
Q  1 gctccacacatatttgtttacattagtgtga-ttttgtccgaattcacaacaa 52  Q
    ||||||||||| |||||||||||| |||||| |||| ||||||||||||||||    
T  26313015 gctccacacatctttgtttacattggtgtgagttttatccgaattcacaacaa 26312963  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 1 - 52
Target Start/End: Original strand, 31071464 - 31071517
Alignment:
Q  1 gctccacacatatttgtttacattagtgtga--ttttgtccgaattcacaacaa 52  Q
    ||||||||||| |||||||||||| ||||||  |||| ||||||||||||||||    
T  31071464 gctccacacatctttgtttacattggtgtgagtttttatccgaattcacaacaa 31071517  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 1 - 53
Target Start/End: Complemental strand, 26301009 - 26300956
Alignment:
Q  1 gctccacacatatttgtttacattagtgtga-ttttgtccgaattcacaacaat 53  Q
    ||||||| ||| |||||||||||| |||||| |||| |||||||||||||||||    
T  26301009 gctccacgcatctttgtttacattggtgtgagttttatccgaattcacaacaat 26300956  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 35; Significance: 0.0000000002; HSPs: 11)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 1 - 51
Target Start/End: Original strand, 27986670 - 27986720
Alignment:
Q  1 gctccacacatatttgtttacattagtgtgattttgtccgaattcacaaca 51  Q
    |||||| |||| |||||||||||| |||||| |||||||||||||||||||    
T  27986670 gctccatacatctttgtttacattggtgtgagtttgtccgaattcacaaca 27986720  T

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Target: chr3; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 2 - 52
Target Start/End: Original strand, 33386893 - 33386943
Alignment:
Q  2 ctccacacatatttgtttacattagtgtgattttgtccgaattcacaacaa 52  Q
    |||||||||| |||||||||||| |||||| |||||||| |||||||||||    
T  33386893 ctccacacatctttgtttacattggtgtgagtttgtccggattcacaacaa 33386943  T

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Target: chr3; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 1 - 51
Target Start/End: Complemental strand, 1305812 - 1305761
Alignment:
Q  1 gctccacacatatttgtttacattagtgtga-ttttgtccgaattcacaaca 51  Q
    ||||||||||| |||||||||||| |||||| |||| |||||||||||||||    
T  1305812 gctccacacatctttgtttacattggtgtgagttttatccgaattcacaaca 1305761  T

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Target: chr3; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 1 - 51
Target Start/End: Original strand, 18554512 - 18554563
Alignment:
Q  1 gctccacacatatttgtt-tacattagtgtgattttgtccgaattcacaaca 51  Q
    ||||||||||| |||||| | |||| ||||||||||||||||||||||||||    
T  18554512 gctccacacatctttgttattcattggtgtgattttgtccgaattcacaaca 18554563  T

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Target: chr3; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 1 - 52
Target Start/End: Complemental strand, 27452820 - 27452769
Alignment:
Q  1 gctccacacatatttgtttacattagtgtgattttgtccgaattcacaacaa 52  Q
    ||||||||||| |||||||||||| |||| | ||||||||||||| ||||||    
T  27452820 gctccacacatctttgtttacattggtgttagtttgtccgaattctcaacaa 27452769  T

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Target: chr3; HSP #6
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 1 - 51
Target Start/End: Complemental strand, 32143184 - 32143133
Alignment:
Q  1 gctccacacatatttgtttacattagtgtga-ttttgtccgaattcacaaca 51  Q
    ||||||||||| |||||||||||| |||||| |||| |||||||||||||||    
T  32143184 gctccacacatctttgtttacattggtgtgagttttatccgaattcacaaca 32143133  T

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Target: chr3; HSP #7
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 235 - 281
Target Start/End: Complemental strand, 9557487 - 9557441
Alignment:
Q  235 ccccccgcggtagttaactaccgtttgtcaaaccggcagcagttaac 281  Q
    ||||| ||||||||||||||||||||| |||||||||| || |||||    
T  9557487 cccccggcggtagttaactaccgtttggcaaaccggcaacatttaac 9557441  T

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Target: chr3; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 1 - 49
Target Start/End: Complemental strand, 1309717 - 1309668
Alignment:
Q  1 gctccacacatatttgtttacattagtgtga-ttttgtccgaattcacaa 49  Q
    ||||||||||| |||||||||||| |||||| |||| |||||||||||||    
T  1309717 gctccacacatctttgtttacattggtgtgagttttatccgaattcacaa 1309668  T

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Target: chr3; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 1 - 53
Target Start/End: Original strand, 3323788 - 3323841
Alignment:
Q  1 gctccacacatatttgtt-tacattagtgtgattttgtccgaattcacaacaat 53  Q
    ||||||||||| |||||| | |||| |||||||||||| |||||||||||||||    
T  3323788 gctccacacatctttgttattcattggtgtgattttgtacgaattcacaacaat 3323841  T

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Target: chr3; HSP #10
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 1 - 53
Target Start/End: Original strand, 6794937 - 6794990
Alignment:
Q  1 gctccacacatatttgttta-cattagtgtgattttgtccgaattcacaacaat 53  Q
    |||||||||||  ||||||  |||| ||||||||||||||||||||||||||||    
T  6794937 gctccacacatcgttgtttttcattggtgtgattttgtccgaattcacaacaat 6794990  T

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Target: chr3; HSP #11
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 235 - 280
Target Start/End: Complemental strand, 29774839 - 29774794
Alignment:
Q  235 ccccccgcggtagttaactaccgtttgtcaaaccggcagcagttaa 280  Q
    ||||| ||||||||||||||||||| | | ||||||||||||||||    
T  29774839 cccccagcggtagttaactaccgttgggctaaccggcagcagttaa 29774794  T

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Target: chr6 (Bit Score: 32; Significance: 0.00000001; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 1 - 51
Target Start/End: Original strand, 5572831 - 5572882
Alignment:
Q  1 gctccacacatatttgtt-tacattagtgtgattttgtccgaattcacaaca 51  Q
    ||||||||||| |||||| | |||| ||||||||||||||||||||||||||    
T  5572831 gctccacacatctttgttattcattggtgtgattttgtccgaattcacaaca 5572882  T

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Target: chr6; HSP #2
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 21 - 51
Target Start/End: Original strand, 10077421 - 10077451
Alignment:
Q  21 cattagtgtgattttgtccgaattcacaaca 51  Q
    |||||||||||||||||||||||||||||||    
T  10077421 cattagtgtgattttgtccgaattcacaaca 10077451  T

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Target: scaffold0176 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: scaffold0176
Description:

Target: scaffold0176; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 1 - 53
Target Start/End: Complemental strand, 17128 - 17075
Alignment:
Q  1 gctccacacatatttgtt-tacattagtgtgattttgtccgaattcacaacaat 53  Q
    ||||||||||| |||||| | ||||  |||||||||||||||||||||||||||    
T  17128 gctccacacatctttgttattcattcatgtgattttgtccgaattcacaacaat 17075  T

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