View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20654_low_9 (Length: 471)
Name: NF20654_low_9
Description: NF20654
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20654_low_9 |
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| [»] chr7 (4 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 455; Significance: 0; HSPs: 4)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 455; E-Value: 0
Query Start/End: Original strand, 1 - 471
Target Start/End: Complemental strand, 30116245 - 30115775
Alignment:
| Q |
1 |
ttggcactatagttattgtctaggagtatgttacttggttttatgtctctatggaagattggaatagaagctgagaaatgcatatatgtcactgctccgg |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
30116245 |
ttggcactatagttattgtctaggagtatgttacttggttttatgtctctatggaagattggaatagaagctgagaaatgcatatatgtcactgctccgg |
30116146 |
T |
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| Q |
101 |
caacctcacatgcaattctaaggcgactttcccatgaaagggatgaatcacggtctttcccatggatatgttgggaaagagttccgttgtgaatgtattc |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
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| T |
30116145 |
caacctcacatgcaattctaaggcgactttcccatgaaagggatgaatcacggtctttcccatggatatgttgggaaagagttccgctgtgaatgtattc |
30116046 |
T |
|
| Q |
201 |
atagacaagtaatggagtttctgtctcaagacaacaacctaaaagcttgacaatgttcctgtggttgatctgagataagatgactacttcgttgacaaac |
300 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
30116045 |
atagacaagtaatggagtttctgtctcaagacaacaacctaaaagtttgacaatgttcctgtggttgatctgagataagatgactacttcgttgacaaac |
30115946 |
T |
|
| Q |
301 |
gtttctatttggtttctgtcaaggtgttttgactttttaaccgcgactatggttccatctggtagcattcctttgtacactgtaccatagccgccttgac |
400 |
Q |
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||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
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| T |
30115945 |
gtttctatttggtttctgtcaaggtgttttgactttttaactgcgactatggttccatctggtagcattcctttgtacactgtgccatagccgccttgac |
30115846 |
T |
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| Q |
401 |
caagaaacctactttggttgtagtcatctgttgctctttggagctcctctgctgtaaaaagctttgccatt |
471 |
Q |
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| T |
30115845 |
caagaaacctactttggttgtagtcatctgttgctctttggagctcctctgctgtaaaaagctttgccatt |
30115775 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 243; E-Value: 1e-134
Query Start/End: Original strand, 1 - 471
Target Start/End: Complemental strand, 30106154 - 30105684
Alignment:
| Q |
1 |
ttggcactatagttattgtctaggagtatgttacttggttttatgtctctatggaagattggaatagaagctgagaaatgcatatatgtcactgctccgg |
100 |
Q |
| |
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||||||||| ||||| ||||||| |||||||| | |||||||||||||| |||||||||||||||||||| || ||||||||||||| ||||||||| | |
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| T |
30106154 |
ttggcactaaagttactgtctagtagtatgtttgtgggttttatgtctctgtggaagattggaatagaagccgaaaaatgcatatatgccactgctccag |
30106055 |
T |
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| Q |
101 |
caacctcacatgcaattctaaggcgactttcccatgaaagggatgaatcacggtctttcccatggatatgttgggaaagagttccgttgtgaatgtattc |
200 |
Q |
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|||| |||||||||||||| ||||| |||||||||||||||| || || |||||||| ||| |||||||||||||||||||||||| |||| |||| |
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| T |
30106054 |
caacttcacatgcaattcttaggcggttttcccatgaaagggaggactcttggtctttcatatgtatatgttgggaaagagttccgttgggaataaattc |
30105955 |
T |
|
| Q |
201 |
atagacaagtaatggagtttctgtctcaagacaacaacctaaaagcttgacaatgttcctgtggttgatctgagataagatgactacttcgttgacaaac |
300 |
Q |
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||| || ||||||||||||||||| ||||||||||| ||||| || |||||||| ||||||||||||||||| || |||||||| ||||| |||||||| |
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| T |
30105954 |
ataaactagtaatggagtttctgtttcaagacaacagcctaagagtttgacaatattcctgtggttgatctgtgacaagatgaccacttcattgacaaaa |
30105855 |
T |
|
| Q |
301 |
gtttctatttggtttctgtcaaggtgttttgactttttaaccgcgactatggttccatctggtagcattcctttgtacactgtaccatagccgccttgac |
400 |
Q |
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|| ||||| ||||| || || || | ||||||||||||||| || ||||||||||||||||||| ||||||||||||||| || |||||||| ||||||| |
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| T |
30105854 |
gtctctatctggttcctttctagttcttttgactttttaactgcaactatggttccatctggtaacattcctttgtacaccgtgccatagccaccttgac |
30105755 |
T |
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| Q |
401 |
caagaaacctactttggttgtagtcatctgttgctctttggagctcctctgctgtaaaaagctttgccatt |
471 |
Q |
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| T |
30105754 |
caagaaatctactccggttgtagttatctgttgctctttgcagctcttctgccgtaaaaagctttgccatt |
30105684 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 264 - 356
Target Start/End: Original strand, 30122921 - 30123010
Alignment:
| Q |
264 |
gttgatctgagataagatgactacttcgttgacaaacgtttctatttggtttctgtcaaggtgttttgactttttaaccgcgactatggttcc |
356 |
Q |
| |
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|||||||||||||||||||| ||||| ||||||| | |||||||||||| |||||||| ||||| ||||||||||| || | ||||||||| |
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| T |
30122921 |
gttgatctgagataagatgaatactt---tgacaaaagcttctatttggttcctgtcaagctgtttcgactttttaactgcaattatggttcc |
30123010 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 415 - 468
Target Start/End: Original strand, 30123049 - 30123102
Alignment:
| Q |
415 |
tggttgtagtcatctgttgctctttggagctcctctgctgtaaaaagctttgcc |
468 |
Q |
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| T |
30123049 |
tggttgtagctatctgttgctctttgcagttcctctgctataaaaagttttgcc |
30123102 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 316 - 467
Target Start/End: Original strand, 21428189 - 21428340
Alignment:
| Q |
316 |
ctgtcaaggtgttttgactttttaaccgcgactatggttccatctggtagcattcctttgtacactgtaccatagccgccttgaccaagaaacctacttt |
415 |
Q |
| |
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||||||| ||||||||||||||||| | || |||||||||||| || | ||||||||||||| | ||||| || |||||| || |||||| | | |
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| T |
21428189 |
ctgtcaaactgttttgactttttaactgtgattatggttccatccggcgacgttcctttgtacaccatgccataaccctcttgactgaggaacctattct |
21428288 |
T |
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| Q |
416 |
ggttgtagtcatctgttgctctttggagctcctctgctgtaaaaagctttgc |
467 |
Q |
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||||||| ||||| ||||||||| ||||| | |||||||||||||||| |
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| T |
21428289 |
cgttgtagatatctgctgctctttgcagctctatttctgtaaaaagctttgc |
21428340 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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