View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20655_high_11 (Length: 380)
Name: NF20655_high_11
Description: NF20655
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20655_high_11 |
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Alignment Details
Target: chr3 (Bit Score: 203; Significance: 1e-111; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 203; E-Value: 1e-111
Query Start/End: Original strand, 67 - 319
Target Start/End: Complemental strand, 850897 - 850644
Alignment:
| Q |
67 |
taataaataaggataagattatgaaaca--attatccataaagtttgtgtnnnnnnntaaaataaatttatccataaagttcgtactaactttttggtgg |
164 |
Q |
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| T |
850897 |
taataaataag-ataaaataatgaaacataattattcataaagtttgtgtaaaaaaataaaataaatttatccataaagttcgtactaactttttggtgg |
850799 |
T |
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| Q |
165 |
ttgaaatactaaattcttgtctaaactctacaaattgactcccgtatccgtatcctgcagctacgatggtccacacatgaagatgccatcgagacaaaag |
264 |
Q |
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| T |
850798 |
ttgaaatactaaattcttgtctaaactctacaaattgactcccgtatccgtatcctgcagctacgatggtccacacatgaagatgccatcgagacaaaag |
850699 |
T |
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| Q |
265 |
taaaagaaatcaacactctcatctcatctcatttctaaacgcataaaacccaaac |
319 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
850698 |
taaaagaaatcaacactctcatctcatctcatttctaaacgcataaaacccaaac |
850644 |
T |
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