View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20655_high_13 (Length: 331)
Name: NF20655_high_13
Description: NF20655
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20655_high_13 |
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Alignment Details
Target: chr5 (Bit Score: 250; Significance: 1e-139; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 250; E-Value: 1e-139
Query Start/End: Original strand, 15 - 322
Target Start/End: Original strand, 8841938 - 8842243
Alignment:
| Q |
15 |
caggaagcacacatcaccaccaccataatctacactcttccctctctcgccgcgacaaatcacgcctttctcattcctcctcctccacttcaaccactgc |
114 |
Q |
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| T |
8841938 |
caggaagcacacatcaccaccaccataatctacactcttccctctctcgccgcgacaaaccacgcctttctcattcctcgtcctccacttcaaccactgc |
8842037 |
T |
|
| Q |
115 |
ccctcgaagaccgcatcaccacccgccaatgcgaaaaccaaaccctccatgtcaaccaacgtcttgccacaactcacctcgccctcaaacaagacctctc |
214 |
Q |
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| T |
8842038 |
cc-tcgaagaccgcatcaccacccgccaatgcgaaaaccaaaccctccatgtcaaccaacgtcttgccacaactcacctcgccctcaaacaagacctctc |
8842136 |
T |
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| Q |
215 |
cgccacacaacaagagcttcgtcagctctctaccgacgatgtcaaagtcgaacgagacgcaaatccnnnnnnnnnnnccttcttcgatttgttttgtgtg |
314 |
Q |
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| T |
8842137 |
cgccacacaacaagagcttcgtcatctctctaccgacgatgtcaaagtcgaacgagacgcaaatcc-ttttttttttccttcttcgatttgttttgtgtg |
8842235 |
T |
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| Q |
315 |
gttctgtg |
322 |
Q |
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|||||||| |
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| T |
8842236 |
gttctgtg |
8842243 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 113; E-Value: 3e-57
Query Start/End: Original strand, 15 - 274
Target Start/End: Original strand, 30972505 - 30972775
Alignment:
| Q |
15 |
caggaagcacacatcaccaccaccataatctacactcttccctctctcgccgcgacaaatcacgcctttctcattcctcctcctcc---acttcaaccac |
111 |
Q |
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| T |
30972505 |
caggacgcaaacatcaccaccaccataatcttcactcttctctctcccgccgcgacgagccacgtctctctcattcctcctcctcctccacctcaaccac |
30972604 |
T |
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| Q |
112 |
tgcccctcgaagaccgcatcaccacccgccaatgcgaaaaccaaaccctcc---atgtcaaccaacgtcttgccacaactcacctcgccctcaaacaaga |
208 |
Q |
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| T |
30972605 |
cgccc-tcgaagaccgcatcaccacccgccaccgcgaaatccaaaccctcctccacgacaaccaacgtctcgccacaactcacctcgccttaaaacaaga |
30972703 |
T |
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| Q |
209 |
cctctccgccacacaacaagagcttcgtcagctct------ctaccgacgatgtcaaagtcgaacgagacgc |
274 |
Q |
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|||| ||||||| |||||||||||||||||||||| || ||| ||||||||||| |||||||||||| |
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| T |
30972704 |
cctcaccgccactcaacaagagcttcgtcagctctccgccgctgccgccgatgtcaaagccgaacgagacgc |
30972775 |
T |
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