View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20655_high_18 (Length: 240)

Name: NF20655_high_18
Description: NF20655
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20655_high_18
NF20655_high_18
[»] chr3 (5 HSPs)
chr3 (1-238)||(36725159-36725396)
chr3 (18-78)||(44284124-44284184)
chr3 (28-78)||(44374720-44374770)
chr3 (26-78)||(40122826-40122878)
chr3 (34-78)||(42808923-42808967)
[»] chr6 (4 HSPs)
chr6 (21-79)||(2205637-2205695)
chr6 (28-65)||(7713982-7714019)
chr6 (34-111)||(34405017-34405093)
chr6 (34-78)||(21959672-21959716)
[»] chr8 (5 HSPs)
chr8 (34-78)||(11000643-11000687)
chr8 (39-78)||(10218858-10218897)
chr8 (28-78)||(31915345-31915395)
chr8 (28-76)||(787182-787230)
chr8 (32-64)||(8823473-8823505)
[»] chr4 (5 HSPs)
chr4 (34-78)||(34368821-34368865)
chr4 (28-78)||(9680608-9680658)
chr4 (28-78)||(54327525-54327575)
chr4 (19-91)||(51044525-51044597)
chr4 (34-78)||(4500812-4500856)
[»] chr2 (5 HSPs)
chr2 (34-78)||(40758967-40759011)
chr2 (22-78)||(3227731-3227787)
chr2 (28-64)||(11344360-11344396)
chr2 (31-79)||(31461381-31461429)
chr2 (27-79)||(32098383-32098435)
[»] chr1 (5 HSPs)
chr1 (21-64)||(14737774-14737817)
chr1 (76-111)||(40304192-40304227)
chr1 (19-78)||(50319236-50319295)
chr1 (73-118)||(44375472-44375517)
chr1 (34-78)||(36151587-36151631)
[»] chr5 (2 HSPs)
chr5 (30-64)||(39128597-39128631)
chr5 (28-64)||(42181168-42181204)
[»] chr7 (3 HSPs)
chr7 (28-64)||(1417222-1417258)
chr7 (28-64)||(39591543-39591579)
chr7 (24-64)||(44239052-44239092)


Alignment Details
Target: chr3 (Bit Score: 226; Significance: 1e-125; HSPs: 5)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 226; E-Value: 1e-125
Query Start/End: Original strand, 1 - 238
Target Start/End: Original strand, 36725159 - 36725396
Alignment:
Q  1 ctaccggcttaaatgctcaggatagtttatgagaacaatttgactttgttttatcttttgttatggatacagcttatatgataaacacttacagtataag 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  36725159 ctaccggcttaaatgctcaggatagtttatgagaacaatttgactttgttttatcttttgttatggatacagcttatatgataaacacttacagtataag 36725258  T
Q  101 tgcttaattaaactgtttgtctaaagctaatgaatttggacacatgatgtttgcaggtacaagtgatcacaagaaaagtttgtgagccattagaggagga 200  Q
    ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |||||||||||||||||||||||||||||    
T  36725259 tgcttaatttaactgtttgtctaaagctaatgaatttggacacatgatgtttgcaggtacaagtgataactagaaaagtttgtgagccattagaggagga 36725358  T
Q  201 ttcctttagaccaattcttcatcactatgatggtccta 238  Q
    ||||||||||||||||||||||||||||||||||||||    
T  36725359 ttcctttagaccaattcttcatcactatgatggtccta 36725396  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 18 - 78
Target Start/End: Original strand, 44284124 - 44284184
Alignment:
Q  18 caggatagtttatgagaacaatttgactttgttttatcttttgttatggatacagcttata 78  Q
    |||||||| |||||| |||| |||||||||||||||| ||||||||| || | ||||||||    
T  44284124 caggatagcttatgaaaacagtttgactttgttttattttttgttatagaaatagcttata 44284184  T

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Target: chr3; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 28 - 78
Target Start/End: Original strand, 44374720 - 44374770
Alignment:
Q  28 tatgagaacaatttgactttgttttatcttttgttatggatacagcttata 78  Q
    ||||| |||||||||||||| |||||||||||||||  |||| ||||||||    
T  44374720 tatgaaaacaatttgactttattttatcttttgttaaagatatagcttata 44374770  T

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Target: chr3; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 26 - 78
Target Start/End: Original strand, 40122826 - 40122878
Alignment:
Q  26 tttatgagaacaatttgactttgttttatcttttgttatggatacagcttata 78  Q
    ||||||| |||| ||||||||| |||||||||||||||| || | ||||||||    
T  40122826 tttatgaaaacagtttgactttattttatcttttgttattgaaatagcttata 40122878  T

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Target: chr3; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 34 - 78
Target Start/End: Complemental strand, 42808967 - 42808923
Alignment:
Q  34 aacaatttgactttgttttatcttttgttatggatacagcttata 78  Q
    |||||||| ||||| |||||||||||||||| || ||||||||||    
T  42808967 aacaatttaactttattttatcttttgttatagaaacagcttata 42808923  T

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Target: chr6 (Bit Score: 35; Significance: 0.00000000008; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 21 - 79
Target Start/End: Original strand, 2205637 - 2205695
Alignment:
Q  21 gatagtttatgagaacaatttgactttgttttatcttttgttatggatacagcttatat 79  Q
    ||||| |||||| ||||||||||||||||||||||||||||| | || | |||||||||    
T  2205637 gatagcttatgaaaacaatttgactttgttttatcttttgttttagaaatagcttatat 2205695  T

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Target: chr6; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 28 - 65
Target Start/End: Complemental strand, 7714019 - 7713982
Alignment:
Q  28 tatgagaacaatttgactttgttttatcttttgttatg 65  Q
    ||||| |||||||||||||| |||||||||||||||||    
T  7714019 tatgaaaacaatttgactttattttatcttttgttatg 7713982  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 34 - 111
Target Start/End: Complemental strand, 34405093 - 34405017
Alignment:
Q  34 aacaatttgactttgttttatcttttgttatggatacagcttatatgataaacacttacagtataagtgcttaattaa 111  Q
    |||||||||||||| ||||| ||||| |||| || | |||||||| |||||||||||| |  |||||| |||||||||    
T  34405093 aacaatttgactttattttaacttttattatagaaatagcttata-gataaacacttatatcataagtccttaattaa 34405017  T

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Target: chr6; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 34 - 78
Target Start/End: Complemental strand, 21959716 - 21959672
Alignment:
Q  34 aacaatttgactttgttttatcttttgttatggatacagcttata 78  Q
    ||||| |||||||| ||||||||||||||||||| | ||||||||    
T  21959716 aacaaattgactttattttatcttttgttatggaaatagcttata 21959672  T

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Target: chr8 (Bit Score: 33; Significance: 0.000000001; HSPs: 5)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 34 - 78
Target Start/End: Original strand, 11000643 - 11000687
Alignment:
Q  34 aacaatttgactttgttttatcttttgttatggatacagcttata 78  Q
    |||||||||||||| ||||||||||||||||||| | ||||||||    
T  11000643 aacaatttgactttattttatcttttgttatggaaatagcttata 11000687  T

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Target: chr8; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 39 - 78
Target Start/End: Complemental strand, 10218897 - 10218858
Alignment:
Q  39 tttgactttgttttatcttttgttatggatacagcttata 78  Q
    ||||||||| ||||||||||||||||||| ||||||||||    
T  10218897 tttgactttattttatcttttgttatggaaacagcttata 10218858  T

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Target: chr8; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 28 - 78
Target Start/End: Original strand, 31915345 - 31915395
Alignment:
Q  28 tatgagaacaatttgactttgttttatcttttgttatggatacagcttata 78  Q
    ||||| |||||||||||||| || ||||||||||||| |||| ||||||||    
T  31915345 tatgaaaacaatttgactttattctatcttttgttatagatatagcttata 31915395  T

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Target: chr8; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 28 - 76
Target Start/End: Original strand, 787182 - 787230
Alignment:
Q  28 tatgagaacaatttgactttgttttatcttttgttatggatacagctta 76  Q
    ||||| |||||||||||||| ||||||||| ||||| ||| ||||||||    
T  787182 tatgataacaatttgactttattttatcttatgttacggaaacagctta 787230  T

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Target: chr8; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 32 - 64
Target Start/End: Original strand, 8823473 - 8823505
Alignment:
Q  32 agaacaatttgactttgttttatcttttgttat 64  Q
    |||||||| ||||||||||||||||||||||||    
T  8823473 agaacaatctgactttgttttatcttttgttat 8823505  T

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Target: chr4 (Bit Score: 33; Significance: 0.000000001; HSPs: 5)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 34 - 78
Target Start/End: Complemental strand, 34368865 - 34368821
Alignment:
Q  34 aacaatttgactttgttttatcttttgttatggatacagcttata 78  Q
    ||||||||||||||||||||||||||||||| || | ||||||||    
T  34368865 aacaatttgactttgttttatcttttgttatagaaatagcttata 34368821  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 28 - 78
Target Start/End: Complemental strand, 9680658 - 9680608
Alignment:
Q  28 tatgagaacaatttgactttgttttatcttttgttatggatacagcttata 78  Q
    |||||||||||||||||||| ||||||||||| |||| || | ||||||||    
T  9680658 tatgagaacaatttgactttattttatcttttattatcgaaatagcttata 9680608  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 28 - 78
Target Start/End: Original strand, 54327525 - 54327575
Alignment:
Q  28 tatgagaacaatttgactttgttttatcttttgttatggatacagcttata 78  Q
    ||||| |||| |||||||||||||||||||||||||| || ||| ||||||    
T  54327525 tatgaaaacagtttgactttgttttatcttttgttatagaaacaacttata 54327575  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 19 - 91
Target Start/End: Original strand, 51044525 - 51044597
Alignment:
Q  19 aggatagtttatgagaacaa-tttgactttgttttatcttttgttatggatacagcttatatgataaacactta 91  Q
    ||||||| |||||| ||||| ||||||||| |||||||||||||||| || | ||||||||  |||||||||||    
T  51044525 aggatagcttatgaaaacaagtttgactttattttatcttttgttatagaaatagcttata-cataaacactta 51044597  T

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Target: chr4; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 34 - 78
Target Start/End: Complemental strand, 4500856 - 4500812
Alignment:
Q  34 aacaatttgactttgttttatcttttgttatggatacagcttata 78  Q
    |||||||| |||||||||||| |||| |||| |||||||||||||    
T  4500856 aacaatttaactttgttttattttttattatagatacagcttata 4500812  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 33; Significance: 0.000000001; HSPs: 5)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 34 - 78
Target Start/End: Complemental strand, 40759011 - 40758967
Alignment:
Q  34 aacaatttgactttgttttatcttttgttatggatacagcttata 78  Q
    |||||||||||||| ||||||||||||||||||| | ||||||||    
T  40759011 aacaatttgactttattttatcttttgttatggaaatagcttata 40758967  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 22 - 78
Target Start/End: Original strand, 3227731 - 3227787
Alignment:
Q  22 atagtttatgagaacaatttgactttgttttatcttttgttatggatacagcttata 78  Q
    |||| |||||| |||||||| |||||||||||| |||| |||| || ||||||||||    
T  3227731 atagcttatgaaaacaatttaactttgttttattttttattatagaaacagcttata 3227787  T

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Target: chr2; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 28 - 64
Target Start/End: Original strand, 11344360 - 11344396
Alignment:
Q  28 tatgagaacaatttgactttgttttatcttttgttat 64  Q
    ||||| |||||||||||||| ||||||||||||||||    
T  11344360 tatgaaaacaatttgactttcttttatcttttgttat 11344396  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 31 - 79
Target Start/End: Complemental strand, 31461429 - 31461381
Alignment:
Q  31 gagaacaatttgactttgttttatcttttgttatggatacagcttatat 79  Q
    ||||| ||||||||||| |||||||||||||||| || | |||||||||    
T  31461429 gagaataatttgactttattttatcttttgttatagaaatagcttatat 31461381  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 27 - 79
Target Start/End: Original strand, 32098383 - 32098435
Alignment:
Q  27 ttatgagaacaatttgactttgttttatcttttgttatggatacagcttatat 79  Q
    |||||| |||| ||||||||| |||||||||||||||| || | |||||||||    
T  32098383 ttatgaaaacactttgactttattttatcttttgttatagaaatagcttatat 32098435  T

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Target: chr1 (Bit Score: 32; Significance: 0.000000005; HSPs: 5)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 21 - 64
Target Start/End: Original strand, 14737774 - 14737817
Alignment:
Q  21 gatagtttatgagaacaatttgactttgttttatcttttgttat 64  Q
    ||||| |||||| |||||||||||||| ||||||||||||||||    
T  14737774 gatagcttatgaaaacaatttgactttattttatcttttgttat 14737817  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 76 - 111
Target Start/End: Original strand, 40304192 - 40304227
Alignment:
Q  76 atatgataaacacttacagtataagtgcttaattaa 111  Q
    |||||||||||||||||| |||||||||||||||||    
T  40304192 atatgataaacacttacactataagtgcttaattaa 40304227  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 19 - 78
Target Start/End: Complemental strand, 50319295 - 50319236
Alignment:
Q  19 aggatagtttatgagaacaatttgactttgttttatcttttgttatggatacagcttata 78  Q
    ||||||| |||||| ||||| |||||||| |||||||||||||||| || | ||||||||    
T  50319295 aggatagcttatgaaaacaacttgactttattttatcttttgttatagaaatagcttata 50319236  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 73 - 118
Target Start/End: Original strand, 44375472 - 44375517
Alignment:
Q  73 cttatatgataaacacttacagtataagtgcttaattaaactgttt 118  Q
    |||||| ||||||||||||   ||||||||||||||||||||||||    
T  44375472 cttataagataaacacttaggttataagtgcttaattaaactgttt 44375517  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 34 - 78
Target Start/End: Original strand, 36151587 - 36151631
Alignment:
Q  34 aacaatttgactttgttttatcttttgttatggatacagcttata 78  Q
    |||||||||||||| |||||||||||||||| || | ||||||||    
T  36151587 aacaatttgactttattttatcttttgttattgaaatagcttata 36151631  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 31; Significance: 0.00000002; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 30 - 64
Target Start/End: Complemental strand, 39128631 - 39128597
Alignment:
Q  30 tgagaacaatttgactttgttttatcttttgttat 64  Q
    |||||||||||||||||| ||||||||||||||||    
T  39128631 tgagaacaatttgactttattttatcttttgttat 39128597  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 28 - 64
Target Start/End: Original strand, 42181168 - 42181204
Alignment:
Q  28 tatgagaacaatttgactttgttttatcttttgttat 64  Q
    ||||| ||| |||||||||||||||||||||||||||    
T  42181168 tatgaaaaccatttgactttgttttatcttttgttat 42181204  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 29; Significance: 0.0000003; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 28 - 64
Target Start/End: Complemental strand, 1417258 - 1417222
Alignment:
Q  28 tatgagaacaatttgactttgttttatcttttgttat 64  Q
    ||||| |||||||||||||| ||||||||||||||||    
T  1417258 tatgaaaacaatttgactttattttatcttttgttat 1417222  T

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Target: chr7; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 28 - 64
Target Start/End: Original strand, 39591543 - 39591579
Alignment:
Q  28 tatgagaacaatttgactttgttttatcttttgttat 64  Q
    ||||| |||||||||||||| ||||||||||||||||    
T  39591543 tatgaaaacaatttgactttattttatcttttgttat 39591579  T

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Target: chr7; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 24 - 64
Target Start/End: Original strand, 44239052 - 44239092
Alignment:
Q  24 agtttatgagaacaatttgactttgttttatcttttgttat 64  Q
    ||||||||| |||| ||||||||| ||||||||||||||||    
T  44239052 agtttatgaaaacattttgactttattttatcttttgttat 44239092  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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