View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20655_high_19 (Length: 237)
Name: NF20655_high_19
Description: NF20655
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20655_high_19 |
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Alignment Details
Target: chr3 (Bit Score: 180; Significance: 2e-97; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 180; E-Value: 2e-97
Query Start/End: Original strand, 34 - 221
Target Start/End: Complemental strand, 36725138 - 36724951
Alignment:
| Q |
34 |
gataataattggattggagattatacctgagctgggaaacgagattcaccagggcacttcttatcctcccaagctgttggatcaatattacttcctccaa |
133 |
Q |
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| T |
36725138 |
gataataattggattggagattatacctgagcagggaaacgagattcaccagggcacttcttatcctcccaagctgttggatcaatattacttcctccaa |
36725039 |
T |
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| Q |
134 |
aacttgcagcctaaacaaacaccaccaaatattaatattattaccctttgaagattgattcctatttccaattatgatagtagaacat |
221 |
Q |
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| T |
36725038 |
aacttgcagcctaaacaaacaccaccaaatattaatattattaccctttgaagattgattcctatttccaattataatagtagaacat |
36724951 |
T |
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Target: chr8 (Bit Score: 63; Significance: 2e-27; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 56 - 154
Target Start/End: Original strand, 42171430 - 42171528
Alignment:
| Q |
56 |
atacctgagctgggaaacgagattcaccagggcacttcttatcctcccaagctgttggatcaatattacttcctccaaaacttgcagcctaaacaaaca |
154 |
Q |
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|||||||||| |||||||||||||| |||| |||||||| ||||||||||| |||||||||||||| |||| ||||||||||||||||||||||||| |
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| T |
42171430 |
atacctgagcagggaaacgagattcgccagcacacttcttgtcctcccaagccgttggatcaatatttgttccaccaaaacttgcagcctaaacaaaca |
42171528 |
T |
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