View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20655_high_7 (Length: 451)

Name: NF20655_high_7
Description: NF20655
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20655_high_7
NF20655_high_7
[»] chr1 (3 HSPs)
chr1 (18-146)||(43385011-43385139)
chr1 (264-385)||(43384790-43384909)
chr1 (407-439)||(43384672-43384704)
[»] chr6 (6 HSPs)
chr6 (18-148)||(4851992-4852122)
chr6 (18-148)||(11555157-11555287)
chr6 (18-150)||(1601222-1601354)
chr6 (328-385)||(1601781-1601838)
chr6 (328-385)||(4852546-4852603)
chr6 (328-385)||(11554675-11554732)
[»] chr8 (7 HSPs)
chr8 (18-150)||(13758091-13758223)
chr8 (18-150)||(37363765-37363897)
chr8 (18-143)||(21586396-21586519)
chr8 (297-385)||(10899361-10899449)
chr8 (302-385)||(21585912-21585995)
chr8 (328-385)||(37363309-37363366)
chr8 (18-143)||(38292404-38292527)
[»] scaffold0159 (2 HSPs)
scaffold0159 (56-165)||(31329-31437)
scaffold0159 (278-385)||(30856-30961)
[»] chr2 (2 HSPs)
chr2 (56-165)||(5786956-5787064)
chr2 (278-385)||(5786483-5786588)
[»] chr5 (2 HSPs)
chr5 (18-143)||(33011446-33011569)
chr5 (289-385)||(33010086-33010182)
[»] scaffold0380 (1 HSPs)
scaffold0380 (23-108)||(16868-16953)
[»] chr4 (7 HSPs)
chr4 (18-109)||(13233134-13233228)
chr4 (23-128)||(284345-284448)
chr4 (18-143)||(39977259-39977382)
chr4 (32-165)||(12577346-12577477)
chr4 (302-385)||(39977773-39977856)
chr4 (289-385)||(284808-284904)
chr4 (102-165)||(13233612-13233675)
[»] chr3 (2 HSPs)
chr3 (53-143)||(12743862-12743949)
chr3 (289-358)||(12743408-12743477)


Alignment Details
Target: chr1 (Bit Score: 121; Significance: 8e-62; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 121; E-Value: 8e-62
Query Start/End: Original strand, 18 - 146
Target Start/End: Complemental strand, 43385139 - 43385011
Alignment:
Q  18 gaatgacatatatgtgagatgactcatatatacgtgcctagatattttgaaagaagatgtaatattaatttcacttgtgtggtttctcatatagtctaat 117  Q
    |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  43385139 gaataacatatatgtgagatgactcatatatacgtgcctagatattttgaaagaagatgtaatattaatttcacttgtgtggtttctcatatagtctaat 43385040  T
Q  118 acgatgatacaacccaatgtaagctccat 146  Q
    ||||||||||||| |||||||||||||||    
T  43385039 acgatgatacaactcaatgtaagctccat 43385011  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 95; E-Value: 3e-46
Query Start/End: Original strand, 264 - 385
Target Start/End: Complemental strand, 43384909 - 43384790
Alignment:
Q  264 atcaatacaatatttatgaattttattttaataagtgtaatattttggtagtatagttacagactaatctccaactccttcaacaaacccataaaactaa 363  Q
    ||||| ||||||||||||||||||  ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  43384909 atcaagacaatatttatgaatttt--tttaataagtgtaatattttggtagtatagttacagactaatctccaactccttcaacaaacccataaaactaa 43384812  T
Q  364 caacattttattattttccctt 385  Q
    || ||| |||||| ||||||||    
T  43384811 catcatgttattagtttccctt 43384790  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 407 - 439
Target Start/End: Complemental strand, 43384704 - 43384672
Alignment:
Q  407 catccttctttgaaaccactaccaacccaccta 439  Q
    ||||| |||||||||||||||||||||||||||    
T  43384704 catccctctttgaaaccactaccaacccaccta 43384672  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 83; Significance: 4e-39; HSPs: 6)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 83; E-Value: 4e-39
Query Start/End: Original strand, 18 - 148
Target Start/End: Original strand, 4851992 - 4852122
Alignment:
Q  18 gaatgacatatatgtgagatgactcatatatacgtgcctagatattttgaaagaagatgtaatattaatttcacttgtgtggtttctcatatagtctaat 117  Q
    |||| ||||||| ||||||||||||||||||   |||||||||||||||||  |||||||||||||||| ||||||||||||||| ||||||||||||||    
T  4851992 gaataacatatacgtgagatgactcatatatgtatgcctagatattttgaataaagatgtaatattaatctcacttgtgtggtttgtcatatagtctaat 4852091  T
Q  118 acgatgatacaacccaatgtaagctccatga 148  Q
    | | |||||||| ||||||||||||||||||    
T  4852092 atgttgatacaatccaatgtaagctccatga 4852122  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 83; E-Value: 4e-39
Query Start/End: Original strand, 18 - 148
Target Start/End: Complemental strand, 11555287 - 11555157
Alignment:
Q  18 gaatgacatatatgtgagatgactcatatatacgtgcctagatattttgaaagaagatgtaatattaatttcacttgtgtggtttctcatatagtctaat 117  Q
    |||| ||||||| ||||||||||||||||||   |||||||||||||||||  |||||||||||||||| ||||||||||||||| ||||||||||||||    
T  11555287 gaataacatatacgtgagatgactcatatatgtatgcctagatattttgaataaagatgtaatattaatctcacttgtgtggtttgtcatatagtctaat 11555188  T
Q  118 acgatgatacaacccaatgtaagctccatga 148  Q
    | | |||||||| ||||||||||||||||||    
T  11555187 atgttgatacaatccaatgtaagctccatga 11555157  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 18 - 150
Target Start/End: Original strand, 1601222 - 1601354
Alignment:
Q  18 gaatgacatatatgtgagatgactcatatatacgtgcctagatattttgaaagaagatgtaatattaatttcacttgtgtggtttctcatatagtctaat 117  Q
    |||| ||||||| ||||||||||| ||||||   |||||||||||||||||  |||||||||||||||| |||||||| |||||| | ||||||||||||    
T  1601222 gaataacatatacgtgagatgacttatatatgtatgcctagatattttgaataaagatgtaatattaatctcacttgtttggtttgttatatagtctaat 1601321  T
Q  118 acgatgatacaacccaatgtaagctccatgaga 150  Q
    | | |||||||| ||||||||||||||||||||    
T  1601322 atgttgatacaatccaatgtaagctccatgaga 1601354  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 328 - 385
Target Start/End: Original strand, 1601781 - 1601838
Alignment:
Q  328 taatctccaactccttcaacaaacccataaaactaacaacattttattattttccctt 385  Q
    ||||||| |||||||||||||||||||||||| ||||||||  |||||||||||||||    
T  1601781 taatctcaaactccttcaacaaacccataaaattaacaacaacttattattttccctt 1601838  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 328 - 385
Target Start/End: Original strand, 4852546 - 4852603
Alignment:
Q  328 taatctccaactccttcaacaaacccataaaactaacaacattttattattttccctt 385  Q
    ||||||| |||||||||||||||||||||||| ||||||||  |||||||||||||||    
T  4852546 taatctcaaactccttcaacaaacccataaaattaacaacaacttattattttccctt 4852603  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 328 - 385
Target Start/End: Complemental strand, 11554732 - 11554675
Alignment:
Q  328 taatctccaactccttcaacaaacccataaaactaacaacattttattattttccctt 385  Q
    ||||||| |||||||||||||||||||||||| ||||||||  |||||||||||||||    
T  11554732 taatctcaaactccttcaacaaacccataaaattaacaacaacttattattttccctt 11554675  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 77; Significance: 1e-35; HSPs: 7)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 18 - 150
Target Start/End: Original strand, 13758091 - 13758223
Alignment:
Q  18 gaatgacatatatgtgagatgactcatatatacgtgcctagatattttgaaagaagatgtaatattaatttcacttgtgtggtttctcatatagtctaat 117  Q
    |||| ||||||| ||||||||||||||||||   |||||||||||||| ||  |||||||||||||||| ||||||||||||||| ||||||||||||||    
T  13758091 gaataacatatacgtgagatgactcatatatgtatgcctagatattttaaataaagatgtaatattaatctcacttgtgtggtttgtcatatagtctaat 13758190  T
Q  118 acgatgatacaacccaatgtaagctccatgaga 150  Q
    | | |||||||| |||||||||| |||||||||    
T  13758191 atgttgatacaatccaatgtaagttccatgaga 13758223  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 69; E-Value: 8e-31
Query Start/End: Original strand, 18 - 150
Target Start/End: Complemental strand, 37363897 - 37363765
Alignment:
Q  18 gaatgacatatatgtgagatgactcatatatacgtgcctagatattttgaaagaagatgtaatattaatttcacttgtgtggtttctcatatagtctaat 117  Q
    |||| ||||||| |||| |||||| ||||||   |||||||||||||||||  |||||||||||||||| |||||||| |||||| ||||||||||||||    
T  37363897 gaataacatatacgtgaaatgactaatatatgtatgcctagatattttgaataaagatgtaatattaatctcacttgtatggtttgtcatatagtctaat 37363798  T
Q  118 acgatgatacaacccaatgtaagctccatgaga 150  Q
    | | |||||||| | ||||||||||||||||||    
T  37363797 atgttgatacaatcaaatgtaagctccatgaga 37363765  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 18 - 143
Target Start/End: Complemental strand, 21586519 - 21586396
Alignment:
Q  18 gaatgacatatatgtgagatgactcatatatacgtgcctagatattttgaaagaagatgtaatattaatttcacttgtgtggtttctcatatagtctaat 117  Q
    |||| ||||||| |||||||||| || ||||| ||||| ||||| |||||| |||||| |||||||||| |||| |||||  ||||||| |  |||||||    
T  21586519 gaataacatataagtgagatgacacacatatatgtgccaagataatttgaatgaagatataatattaatctcacgtgtgtcatttctcaca--gtctaat 21586422  T
Q  118 acgatgatacaacccaatgtaagctc 143  Q
    ||||||||||||||||||| ||||||    
T  21586421 acgatgatacaacccaatgcaagctc 21586396  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 297 - 385
Target Start/End: Complemental strand, 10899449 - 10899361
Alignment:
Q  297 agtgtaatattttggtagtatagttacagactaatctccaactccttcaacaaacccataaaactaacaacattttattattttccctt 385  Q
    |||||||||||||||||||||||||||  | |||||||||||||  |||| |||  ||||||||||||  ||  |||||||||||||||    
T  10899449 agtgtaatattttggtagtatagttacccagtaatctccaactctgtcaaaaaagtcataaaactaaccgcaagttattattttccctt 10899361  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 302 - 385
Target Start/End: Complemental strand, 21585995 - 21585912
Alignment:
Q  302 aatattttggtagtatagttacagactaatctccaactccttcaacaaacccataaaactaacaacattttattattttccctt 385  Q
    ||||||||||||||||| ||||  |   |||||||||| ||||||||||||||||||| ||||| ||  |||||||||||||||    
T  21585995 aatattttggtagtataattacctagatatctccaacttcttcaacaaacccataaaattaacatcaacttattattttccctt 21585912  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 328 - 385
Target Start/End: Complemental strand, 37363366 - 37363309
Alignment:
Q  328 taatctccaactccttcaacaaacccataaaactaacaacattttattattttccctt 385  Q
    ||||||| |||||||||||||||||||||||| ||||||||   ||||||||||||||    
T  37363366 taatctcaaactccttcaacaaacccataaaattaacaacaacatattattttccctt 37363309  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 18 - 143
Target Start/End: Original strand, 38292404 - 38292527
Alignment:
Q  18 gaatgacatatatgtgagatgactcatatatacgtgcctagatattttgaaagaagatgtaatattaatttcacttgtgtggtttctcatatagtctaat 117  Q
    |||| |||||||  |||||||||||||||||| || |||| | |||||| | ||| |||| || | ||| | | ||||||||||| || ||  |||||||    
T  38292404 gaataacatataaatgagatgactcatatatatgttcctaaagattttggatgaaaatgtgatgtcaatcttatttgtgtggtttatccta--gtctaat 38292501  T
Q  118 acgatgatacaacccaatgtaagctc 143  Q
     | |||||||||||||||||||||||    
T  38292502 gcaatgatacaacccaatgtaagctc 38292527  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0159 (Bit Score: 70; Significance: 2e-31; HSPs: 2)
Name: scaffold0159
Description:

Target: scaffold0159; HSP #1
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 56 - 165
Target Start/End: Complemental strand, 31437 - 31329
Alignment:
Q  56 tagatattttgaaagaagatgtaatattaatttcacttgtgtggtttctcatatagtctaatacgatgatacaacccaatgtaagctccatgagaattgc 155  Q
    ||||||||||||| ||||||||||||||||| ||| |||| |||||| ||||||||||||||||||||||||||| |||||||||||| ||||||| | |    
T  31437 tagatattttgaatgaagatgtaatattaatctcaattgtatggttt-tcatatagtctaatacgatgatacaactcaatgtaagctcaatgagaagtac 31339  T
Q  156 caacattata 165  Q
    ||||||||||    
T  31338 caacattata 31329  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0159; HSP #2
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 278 - 385
Target Start/End: Complemental strand, 30961 - 30856
Alignment:
Q  278 tatgaattttattttaataagtgtaatattttggtagtatagttacagactaatctccaactccttcaacaaacccataaaactaacaacattttattat 377  Q
    |||||||||| ||||||||||| |||||||||||||||||| ||||  | ||||| |||||| ||||||||||| ||||||||||||||||  || ||||    
T  30961 tatgaatttt-ttttaataagtctaatattttggtagtata-ttacccagtaatccccaacttcttcaacaaactcataaaactaacaacaacttgttat 30864  T
Q  378 tttccctt 385  Q
    ||||||||    
T  30863 tttccctt 30856  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 70; Significance: 2e-31; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 56 - 165
Target Start/End: Complemental strand, 5787064 - 5786956
Alignment:
Q  56 tagatattttgaaagaagatgtaatattaatttcacttgtgtggtttctcatatagtctaatacgatgatacaacccaatgtaagctccatgagaattgc 155  Q
    ||||||||||||| ||||||||||||||||| ||| |||| |||||| ||||||||||||||||||||||||||| |||||||||||| ||||||| | |    
T  5787064 tagatattttgaatgaagatgtaatattaatctcaattgtatggttt-tcatatagtctaatacgatgatacaactcaatgtaagctcaatgagaagtac 5786966  T
Q  156 caacattata 165  Q
    ||||||||||    
T  5786965 caacattata 5786956  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 278 - 385
Target Start/End: Complemental strand, 5786588 - 5786483
Alignment:
Q  278 tatgaattttattttaataagtgtaatattttggtagtatagttacagactaatctccaactccttcaacaaacccataaaactaacaacattttattat 377  Q
    |||||||||| ||||||||||| |||||||||||||||||| ||||  | ||||| |||||| ||||||||||| ||||||||||||||||  || ||||    
T  5786588 tatgaatttt-ttttaataagtctaatattttggtagtata-ttacccagtaatccccaacttcttcaacaaactcataaaactaacaacaacttgttat 5786491  T
Q  378 tttccctt 385  Q
    ||||||||    
T  5786490 tttccctt 5786483  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 59; Significance: 8e-25; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 59; E-Value: 8e-25
Query Start/End: Original strand, 18 - 143
Target Start/End: Complemental strand, 33011569 - 33011446
Alignment:
Q  18 gaatgacatatatgtgagatgactcatatatacgtgcctagatattttgaaagaagatgtaatattaatttcacttgtgtggtttctcatatagtctaat 117  Q
    |||| |||||||||||||||||| |  |||||   |||||||||||||||| |||||| |||||||||| |||| |||||| ||||||  ||||||||||    
T  33011569 gaataacatatatgtgagatgacacgcatatatacgcctagatattttgaatgaagatataatattaatctcacgtgtgtgatttctc--atagtctaat 33011472  T
Q  118 acgatgatacaacccaatgtaagctc 143  Q
    ||||||| ||||||||||| ||||||    
T  33011471 acgatgagacaacccaatgcaagctc 33011446  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 289 - 385
Target Start/End: Complemental strand, 33010182 - 33010086
Alignment:
Q  289 ttttaataagtgtaatattttggtagtatagttacagactaatctccaactccttcaacaaacccataaaactaacaacattttattattttccctt 385  Q
    ||||||||| | |||||||||||||||||| ||||  |  ||||||||||| |||||| |||||||||||| ||||| ||  |||||||||||||||    
T  33010182 ttttaataactctaatattttggtagtataattacccataaatctccaacttcttcaataaacccataaaattaacatcaacttattattttccctt 33010086  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0380 (Bit Score: 54; Significance: 8e-22; HSPs: 1)
Name: scaffold0380
Description:

Target: scaffold0380; HSP #1
Raw Score: 54; E-Value: 8e-22
Query Start/End: Original strand, 23 - 108
Target Start/End: Original strand, 16868 - 16953
Alignment:
Q  23 acatatatgtgagatgactcatatatacgtgcctagatattttgaaagaagatgtaatattaatttcacttgtgtggtttctcata 108  Q
    |||||||||||||||||| |||||||| ||||||| |||||||||| || || ||||||||||| || ||||||||||||||||||    
T  16868 acatatatgtgagatgacccatatatatgtgcctaaatattttgaatgatgaagtaatattaatctctcttgtgtggtttctcata 16953  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 52; Significance: 1e-20; HSPs: 7)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 18 - 109
Target Start/End: Original strand, 13233134 - 13233228
Alignment:
Q  18 gaatgacatatatgtgagatgactcatatatacgtgcctagatattttgaaagaagatgtaatattaat-ttc--acttgtgtggtttctcatat 109  Q
    |||| ||||||||| |||||||| ||||||||||||||||||||||||||| |||||| |||||||||| |||  |||||| |||||||||||||    
T  13233134 gaataacatatatgggagatgacccatatatacgtgcctagatattttgaatgaagatctaatattaatattcttacttgtctggtttctcatat 13233228  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 23 - 128
Target Start/End: Original strand, 284345 - 284448
Alignment:
Q  23 acatatatgtgagatgactcatatatacgtgcctagatattttgaaagaagatgtaatattaatttcacttgtgtggtttctcatatagtctaatacgat 122  Q
    |||||||||||||||||| || ||||| | |||||||||||||||| |||||| |||||||||| |||| |||||| ||| ||  || ||||||||||||    
T  284345 acatatatgtgagatgacacacatatatgcgcctagatattttgaatgaagatataatattaatctcacatgtgtgatttttc--attgtctaatacgat 284442  T
Q  123 gataca 128  Q
    ||||||    
T  284443 gataca 284448  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 18 - 143
Target Start/End: Original strand, 39977259 - 39977382
Alignment:
Q  18 gaatgacatatatgtgagatgactcatatatacgtgcctagatattttgaaagaagatgtaatattaatttcacttgtgtggtttctcatatagtctaat 117  Q
    |||| ||||||| |||||||||| || ||||| || || ||||| |||||| |||||| |||||||||| |||| |||||  |||||||||  |||||||    
T  39977259 gaataacatataagtgagatgacacacatatatgtcccaagataatttgaatgaagatataatattaatctcacgtgtgtcatttctcata--gtctaat 39977356  T
Q  118 acgatgatacaacccaatgtaagctc 143  Q
    | ||||||||||||||||| ||||||    
T  39977357 aggatgatacaacccaatgcaagctc 39977382  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 32 - 165
Target Start/End: Complemental strand, 12577477 - 12577346
Alignment:
Q  32 tgagatgactcatatatacgtgcctagatattttgaaagaagatgtaatattaatttcacttgtgtggtttctcatatagtctaatacgatgatacaacc 131  Q
    |||||||||||||||||| ||||||  ||||| |||| || |||||||||||||| || |||||||||||||||  |||||| |||| |||||||| | |    
T  12577477 tgagatgactcatatatatgtgcctgaatattctgaatgatgatgtaatattaatctcgcttgtgtggtttctc--atagtcgaatatgatgatactatc 12577380  T
Q  132 caatgtaagctccatgagaattgccaacattata 165  Q
    |||  || ||||||||  || | |||||||||||    
T  12577379 caacttaggctccatggaaagtaccaacattata 12577346  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 302 - 385
Target Start/End: Original strand, 39977773 - 39977856
Alignment:
Q  302 aatattttggtagtatagttacagactaatctccaactccttcaacaaacccataaaactaacaacattttattattttccctt 385  Q
    ||||||||||||||||| ||||  |  ||||| ||||| ||||||||||||||||||| ||||| ||  |||||||||| ||||    
T  39977773 aatattttggtagtataattactcaaaaatctacaacttcttcaacaaacccataaaattaacatcaacttattattttacctt 39977856  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 289 - 385
Target Start/End: Original strand, 284808 - 284904
Alignment:
Q  289 ttttaataagtgtaatattttggtagtatagttacagactaatctccaactccttcaacaaacccataaaactaacaacattttattattttccctt 385  Q
    ||||||||| | |||||||||||||||||| |||   |  ||||||||||| ||||||||||| ||||| | ||| | ||  |||||||||||||||    
T  284808 ttttaataactctaatattttggtagtataattatccataaatctccaacttcttcaacaaactcataatattaatatcaacttattattttccctt 284904  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 102 - 165
Target Start/End: Original strand, 13233612 - 13233675
Alignment:
Q  102 tctcatatagtctaatacgatgatacaacccaatgtaagctccatgagaattgccaacattata 165  Q
    |||||||||||||||||| |||| | |||| ||| ||||||||||||||| | |||| ||||||    
T  13233612 tctcatatagtctaatacaatgagaaaacctaatataagctccatgagaagtaccaaaattata 13233675  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 53 - 143
Target Start/End: Complemental strand, 12743949 - 12743862
Alignment:
Q  53 gcctagatattttgaaagaagatgtaatattaatttcacttgtgtggtttctcatatagtctaatacgatgatacaacccaatgtaagctc 143  Q
    |||||||||||||||| || ||| ||||| |||| |||| ||||||  ||||||||  ||||||||||||||||||| |||||||||||||    
T  12743949 gcctagatattttgaatgatgatataatactaatctcacgtgtgtgacttctcata--gtctaatacgatgatacaa-ccaatgtaagctc 12743862  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 289 - 358
Target Start/End: Complemental strand, 12743477 - 12743408
Alignment:
Q  289 ttttaataagtgtaatattttggtagtatagttacagactaatctccaactccttcaacaaacccataaa 358  Q
    ||||||||| | |||||||||||||||||| |||  ||  ||||||||||| ||||||||||||||||||    
T  12743477 ttttaataactctaatattttggtagtataattagcgagaaatctccaacttcttcaacaaacccataaa 12743408  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University