View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20655_high_8 (Length: 434)

Name: NF20655_high_8
Description: NF20655
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20655_high_8
NF20655_high_8
[»] chr5 (9 HSPs)
chr5 (1-303)||(1758238-1758540)
chr5 (1-303)||(29568072-29568379)
chr5 (1-303)||(29168345-29168652)
chr5 (8-303)||(27918747-27919045)
chr5 (1-303)||(29425386-29425699)
chr5 (5-235)||(38157364-38157592)
chr5 (379-416)||(1758676-1758713)
chr5 (379-416)||(29425844-29425881)
chr5 (379-416)||(29567893-29567930)
[»] chr4 (8 HSPs)
chr4 (1-303)||(27462090-27462392)
chr4 (1-303)||(27521043-27521345)
chr4 (1-303)||(27482229-27482532)
chr4 (1-290)||(18986190-18986480)
chr4 (379-416)||(27482668-27482705)
chr4 (379-416)||(18986615-18986652)
chr4 (379-416)||(27462594-27462631)
chr4 (379-416)||(27520864-27520901)
[»] chr3 (2 HSPs)
chr3 (8-303)||(25518581-25518877)
chr3 (379-416)||(25519019-25519056)


Alignment Details
Target: chr5 (Bit Score: 274; Significance: 1e-153; HSPs: 9)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 274; E-Value: 1e-153
Query Start/End: Original strand, 1 - 303
Target Start/End: Original strand, 1758238 - 1758540
Alignment:
Q  1 cttagccgctgtgtctctgatccatgcacctcgccagatcaatccattccggtaaaagggctgtcaactgctttgcagcctctgcctccaatcaggagat 100  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||    
T  1758238 cttagccgctgtgtctctgatccatgcacctcgccagatcaatccattccggtaaaagggctatcaactgctttgcagcctctgcctccaatcaggagat 1758337  T
Q  101 gtatatctgaagttattgatccttctgaggttaaagaagcagttgctcgttatttgaactctgctgaaaaaaccacccctgaatctgattcaatggtatg 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1758338 gtatatctgaagttattgatccttctgaggttaaagaagcagttgctcgttatttgaactctgctgaaaaaaccacccctgaatctgattcaatggtatg 1758437  T
Q  201 tgttgaaacttgtgtttcttgctaaaaaagtaatcnnnnnnngatttggaataatgggttttgtttgttatttgtagaggcttaaaaggatgaaggatcg 300  Q
    |||||||||||||||||||||||||||||||||||       ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||    
T  1758438 tgttgaaacttgtgtttcttgctaaaaaagtaatctttttttgatttggaataatgggttttgtttgttttttgtagaggcttaaaaggatgaaggatcg 1758537  T
Q  301 gtt 303  Q
    |||    
T  1758538 gtt 1758540  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 226; E-Value: 1e-124
Query Start/End: Original strand, 1 - 303
Target Start/End: Complemental strand, 29568379 - 29568072
Alignment:
Q  1 cttagccgctgtgtctctgatccatgcacctcgccagatcaatccattccggtaaaagggctgtcaactgctttgcagcctctgcctccaatcaggagat 100  Q
    ||||||||||||||||||||||||||||||| ||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||| ||||    
T  29568379 cttagccgctgtgtctctgatccatgcaccttgccggatcaatccatgccggtaaaagggctgtcaactgctttgcagcctctgcctccgatcagtagat 29568280  T
Q  101 gtatatctgaagttattgatccttctgaggttaaagaagcagttgctcgttatttgaactctgctgaaaaaaccacccctgaatctgattcaatggtatg 200  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||    
T  29568279 gtatatctgaagttattgatccttctgaggttaaagaagcagttgctcgttatttgaactctgctgaaaaaaccacccctgaatctgattcattggtatg 29568180  T
Q  201 tgttgaaacttgtgtttcttgctaaaaaagtaatcnnnnnnnga-tttggaataatgggttttgtttg----ttatttgtagaggcttaaaaggatgaag 295  Q
    ||||||||| |||||||||||||||||||||||||        | |||||||||||||||||||||||    || |||||||||||||||||||||||||    
T  29568179 tgttgaaacatgtgtttcttgctaaaaaagtaatcttttttttattttggaataatgggttttgtttgttttttctttgtagaggcttaaaaggatgaag 29568080  T
Q  296 gatcggtt 303  Q
    ||||||||    
T  29568079 gatcggtt 29568072  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 195; E-Value: 1e-106
Query Start/End: Original strand, 1 - 303
Target Start/End: Original strand, 29168345 - 29168652
Alignment:
Q  1 cttagccgctgtgtctctgatccatgcacctcgccagatcaatccattccggtaaaagggctgtcaactgctttgcagcctctgcctccaatcaggagat 100  Q
    |||||| |||||||||||||||||||||||| ||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||| ||||    
T  29168345 cttagctgctgtgtctctgatccatgcaccttgccggatcaatccatgccggtaaaagggctgtcaactgctttgcagcctctgcctccgatcagtagat 29168444  T
Q  101 gtatatctgaagttattgatccttctgaggttaaagaagcagttgctcgttatttgaactctgctgaaaaaaccacccctgaatctgattcaatggtatg 200  Q
    |||||||||||||||||||||||||| ||||||||||||||||||||| ||||||||||||| |||||| ||||||||||||||||||||||||||||||    
T  29168445 gtatatctgaagttattgatccttctaaggttaaagaagcagttgctctttatttgaactcttctgaaagaaccacccctgaatctgattcaatggtatg 29168544  T
Q  201 tgttgaaacttgtgtttcttgctaaaaaagtaatc-----nnnnnnngatttggaataatgggttttgtttgttatttgtagaggcttaaaaggatgaag 295  Q
    |||||||| ||||||||||||||||||||||||||             |||||||||  ||| ||||  ||| |||||||||||||||||||||||||||    
T  29168545 tgttgaaaattgtgtttcttgctaaaaaagtaatctattttttttttaatttggaatcttggtttttcattgatatttgtagaggcttaaaaggatgaag 29168644  T
Q  296 gatcggtt 303  Q
    ||||||||    
T  29168645 gatcggtt 29168652  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 180; E-Value: 5e-97
Query Start/End: Original strand, 8 - 303
Target Start/End: Original strand, 27918747 - 27919045
Alignment:
Q  8 gctgtgtctctgatccatgcacctcgccagatcaatccattccggtaaaagggctgtcaactgctttgcagcctctgcctccaatcaggagatgtatatc 107  Q
    ||||||| || ||||||||||| | ||||||||||||||||||||| ||||||  ||| |||||||||| |||||| ||||| |||||||||||||||||    
T  27918747 gctgtgtatccgatccatgcactttgccagatcaatccattccggttaaagggtcgtcgactgctttgccgcctctccctccgatcaggagatgtatatc 27918846  T
Q  108 tgaagttattgatccttctgaggttaaagaagcagttgctcgttatttgaactctgctgaaaaaaccacccctgaatctgattcaatggtatgtgttgaa 207  Q
    ||||||||||||||||||||||||||||||||||||| || ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||    
T  27918847 tgaagttattgatccttctgaggttaaagaagcagtttcttgttatttgaactctgctgaaaaaaccacccctgaatctgattcaatggtgtgtgttgaa 27918946  T
Q  208 acttgtgtttcttgctaaaaaagtaatc---nnnnnnngatttggaataatgggttttgtttgttatttgtagaggcttaaaaggatgaaggatcggtt 303  Q
    ||||||||||||||||||||||||||||           ||||||||| |||| |||| |||| | || ||||||||||||||||||||||||||||||    
T  27918947 acttgtgtttcttgctaaaaaagtaatctatttttttttatttggaatcatggtttttctttgattttcgtagaggcttaaaaggatgaaggatcggtt 27919045  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 170; E-Value: 4e-91
Query Start/End: Original strand, 1 - 303
Target Start/End: Original strand, 29425386 - 29425699
Alignment:
Q  1 cttagccgctgtgtctctgatccatgcacctcgccagatcaatccattccggtaaaagggctgtcaactgctttgcagcctctgcctccaatcaggagat 100  Q
    ||||||||||||||||||||||||||||||| |||  |||||||||| ||||||||||||| ||||||||||||||||||||||||||| ||||| ||||    
T  29425386 cttagccgctgtgtctctgatccatgcaccttgccgaatcaatccatgccggtaaaagggccgtcaactgctttgcagcctctgcctccgatcagtagat 29425485  T
Q  101 gtatatctgaagttattgatccttctgaggttaaagaagcagttgctcgttatttgaactctgctgaaaaaaccacccctgaatctgattcaatggtatg 200  Q
    |||||| ||||||||||||||||| | ||||||||||||||||| || ||||||||||||||||||||||||| || ||||||||||||||| |||||||    
T  29425486 gtatatatgaagttattgatccttataaggttaaagaagcagtttcttgttatttgaactctgctgaaaaaactacacctgaatctgattcattggtatg 29425585  T
Q  201 tgt----------tgaaacttgtgtttcttgctaaaaaagtaatcnnnnnnngatttggaataatgggttttgtttg-ttatttgtagaggcttaaaagg 289  Q
    |||          ||||||||||||||||||||||||||||||||        |||||| || |||||||||| ||| || |||||||||||||||||||    
T  29425586 tgttggattattatgaaacttgtgtttcttgctaaaaaagtaatcttttttttatttgggatcatgggttttggttgtttttttgtagaggcttaaaagg 29425685  T
Q  290 atgaaggatcggtt 303  Q
    ||||||||||||||    
T  29425686 atgaaggatcggtt 29425699  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 136; E-Value: 8e-71
Query Start/End: Original strand, 5 - 235
Target Start/End: Original strand, 38157364 - 38157592
Alignment:
Q  5 gccgctgtgtctctgatccatgcacctcgccagatcaatccattccggtaaaagggctgtcaactgctttgcagcctctgcctccaatcaggagatgtat 104  Q
    |||||||||||  ||| ||||||  || ||| ||||||||||| ||||| ||||||  |||||||| ||||| ||||||||||| |||||||||||||||    
T  38157364 gccgctgtgtcaatgacccatgc--ctggccggatcaatccatgccggttaaagggtcgtcaactggtttgccgcctctgcctctaatcaggagatgtat 38157461  T
Q  105 atctgaagttattgatccttctgaggttaaagaagcagttgctcgttatttgaactctgctgaaaaaaccacccctgaatctgattcaatggtatgtgtt 204  Q
    |||||||||||||||||||||||||||||||||| ||||| || ||||||||||||||||||||||||  ||  ||||||||||||||||||||||||||    
T  38157462 atctgaagttattgatccttctgaggttaaagaaacagtttcttgttatttgaactctgctgaaaaaattacatctgaatctgattcaatggtatgtgtt 38157561  T
Q  205 gaaacttgtgtttcttgctaaaaaagtaatc 235  Q
    ||||||||| ||||||||||||| |||||||    
T  38157562 gaaacttgtttttcttgctaaaatagtaatc 38157592  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 379 - 416
Target Start/End: Original strand, 1758676 - 1758713
Alignment:
Q  379 ctcttttgttgctgaagacgaaaaagtcatatctcagg 416  Q
    |||||||||||||||||| |||||||||||||||||||    
T  1758676 ctcttttgttgctgaagatgaaaaagtcatatctcagg 1758713  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 379 - 416
Target Start/End: Original strand, 29425844 - 29425881
Alignment:
Q  379 ctcttttgttgctgaagacgaaaaagtcatatctcagg 416  Q
    ||||||||||||||| || |||||||||||||||||||    
T  29425844 ctcttttgttgctgatgatgaaaaagtcatatctcagg 29425881  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 379 - 416
Target Start/End: Complemental strand, 29567930 - 29567893
Alignment:
Q  379 ctcttttgttgctgaagacgaaaaagtcatatctcagg 416  Q
    |||| ||||||||||||| |||||||||||||||||||    
T  29567930 ctctcttgttgctgaagatgaaaaagtcatatctcagg 29567893  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 230; Significance: 1e-127; HSPs: 8)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 230; E-Value: 1e-127
Query Start/End: Original strand, 1 - 303
Target Start/End: Original strand, 27462090 - 27462392
Alignment:
Q  1 cttagccgctgtgtctctgatccatgcacctcgccagatcaatccattccggtaaaagggctgtcaactgctttgcagcctctgcctccaatcaggagat 100  Q
    |||||||||||||||||||||||||||||||  || ||||||||||| ||||||||||||| ||||||||||||||||||||||||||| ||||| ||||    
T  27462090 cttagccgctgtgtctctgatccatgcacctttccggatcaatccatgccggtaaaagggccgtcaactgctttgcagcctctgcctccgatcagcagat 27462189  T
Q  101 gtatatctgaagttattgatccttctgaggttaaagaagcagttgctcgttatttgaactctgctgaaaaaaccacccctgaatctgattcaatggtatg 200  Q
    ||||||||||||||||||||||| ||||||||||||||||||| |||||||||||||||| |||||||||||||||||||||||||||||||||||||||    
T  27462190 gtatatctgaagttattgatcctactgaggttaaagaagcagtagctcgttatttgaactgtgctgaaaaaaccacccctgaatctgattcaatggtatg 27462289  T
Q  201 tgttgaaacttgtgtttcttgctaaaaaagtaatcnnnnnnngatttggaataatgggttttgtttgttatttgtagaggcttaaaaggatgaaggatcg 300  Q
    ||||||||||||||||||||||||||||||||| |       ||||||||||| ||||||||||||||| ||||||||||||||||||||||||||||||    
T  27462290 tgttgaaacttgtgtttcttgctaaaaaagtaaactttttttgatttggaatattgggttttgtttgttttttgtagaggcttaaaaggatgaaggatcg 27462389  T
Q  301 gtt 303  Q
    |||    
T  27462390 gtt 27462392  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 222; E-Value: 1e-122
Query Start/End: Original strand, 1 - 303
Target Start/End: Complemental strand, 27521345 - 27521043
Alignment:
Q  1 cttagccgctgtgtctctgatccatgcacctcgccagatcaatccattccggtaaaagggctgtcaactgctttgcagcctctgcctccaatcaggagat 100  Q
    ||||||||||||||||||||||| ||||||| ||| ||||||||||| ||||||||||||| |||||||||||||||||||| |||||| ||||| ||||    
T  27521345 cttagccgctgtgtctctgatccttgcaccttgccggatcaatccatgccggtaaaagggccgtcaactgctttgcagcctcagcctccgatcagcagat 27521246  T
Q  101 gtatatctgaagttattgatccttctgaggttaaagaagcagttgctcgttatttgaactctgctgaaaaaaccacccctgaatctgattcaatggtatg 200  Q
    |||||||||||||||||||||||| |||||||||||||||||| ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||    
T  27521245 gtatatctgaagttattgatccttttgaggttaaagaagcagtagctcgttatttgaactctgctaaaaaaaccacccctgaatctgattcaatggtatg 27521146  T
Q  201 tgttgaaacttgtgtttcttgctaaaaaagtaatcnnnnnnngatttggaataatgggttttgtttgttatttgtagaggcttaaaaggatgaaggatcg 300  Q
    ||||||||||||||||||||| |||||||||| ||       ||||||||||||||||||||||||||| || |||||||||||||||||||||||||||    
T  27521145 tgttgaaacttgtgtttcttgataaaaaagtactctttttttgatttggaataatgggttttgtttgtttttcgtagaggcttaaaaggatgaaggatcg 27521046  T
Q  301 gtt 303  Q
    |||    
T  27521045 gtt 27521043  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 219; E-Value: 1e-120
Query Start/End: Original strand, 1 - 303
Target Start/End: Original strand, 27482229 - 27482532
Alignment:
Q  1 cttagccgctgtgtctctgatccatgcacctcgccagatcaatccattccggtaaaagggctgtcaactgctttgcagcctctgcctccaatcaggagat 100  Q
    |||||||||||||||||||||||||||||||  || ||||||||||| || |||||||||| ||||||||||||||||||||||||||| ||||| ||||    
T  27482229 cttagccgctgtgtctctgatccatgcacctttccggatcaatccatgccagtaaaagggccgtcaactgctttgcagcctctgcctccgatcagcagat 27482328  T
Q  101 gtatatctgaagttattgatccttctgaggttaaagaagcagttgctcgttatttgaactctgctgaaaaaaccacccctgaatctgattcaatggtatg 200  Q
    |||||||||||||||| |||||| ||||||||||||||||||| |||||||||||||||| |||||||||||||||||||||||||||||||||||||||    
T  27482329 gtatatctgaagttatcgatcctactgaggttaaagaagcagtagctcgttatttgaactgtgctgaaaaaaccacccctgaatctgattcaatggtatg 27482428  T
Q  201 tgttgaaacttgtgtttcttgctaaaaaagtaatc-nnnnnnngatttggaataatgggttttgtttgttatttgtagaggcttaaaaggatgaaggatc 299  Q
    |||||||||||||||||||||||||||||||||||         |||||||||||||||||||||||||| |||||||||||||||||||||||||||||    
T  27482429 tgttgaaacttgtgtttcttgctaaaaaagtaatcttttttttaatttggaataatgggttttgtttgttttttgtagaggcttaaaaggatgaaggatc 27482528  T
Q  300 ggtt 303  Q
    ||||    
T  27482529 ggtt 27482532  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 218; E-Value: 1e-119
Query Start/End: Original strand, 1 - 290
Target Start/End: Original strand, 18986190 - 18986480
Alignment:
Q  1 cttagccgctgtgtctctgatccatgcacctcgccagatcaatccattccggtaaaagggctgtcaactgctttgcagcctctgcctccaatcaggagat 100  Q
    ||||||||||||||||||||||||||||||| ||| ||||||||||| ||||||||||||| ||||||||||||||||||||||||||||||||||||||    
T  18986190 cttagccgctgtgtctctgatccatgcaccttgccggatcaatccatgccggtaaaagggccgtcaactgctttgcagcctctgcctccaatcaggagat 18986289  T
Q  101 gtatatctgaagttattgatccttctgaggttaaagaagcagttgctcgttatttgaactctgctgaaaaaaccacccctgaatctgattcaatggtatg 200  Q
    |||||||||||||||||||||| ||||| |||||||||||||||| |||||||||||||||||||||||||||||||| |||||||||||||||||||||    
T  18986290 gtatatctgaagttattgatccgtctgatgttaaagaagcagttgatcgttatttgaactctgctgaaaaaaccacccttgaatctgattcaatggtatg 18986389  T
Q  201 tgttgaaacttgtgtttcttgctaaaaaagtaatc-nnnnnnngatttggaataatgggttttgtttgttatttgtagaggcttaaaagga 290  Q
    |||||||||||||||||||||||||||||||||||        || |||||||||||||||||||||||| |||||| |||||||||||||    
T  18986390 tgttgaaacttgtgtttcttgctaaaaaagtaatcttttttttgacttggaataatgggttttgtttgttttttgtataggcttaaaagga 18986480  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 379 - 416
Target Start/End: Original strand, 27482668 - 27482705
Alignment:
Q  379 ctcttttgttgctgaagacgaaaaagtcatatctcagg 416  Q
    |||||||||||||||||| |||||||||||||||||||    
T  27482668 ctcttttgttgctgaagatgaaaaagtcatatctcagg 27482705  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 379 - 416
Target Start/End: Original strand, 18986615 - 18986652
Alignment:
Q  379 ctcttttgttgctgaagacgaaaaagtcatatctcagg 416  Q
    ||||||||||||| |||| |||||||||||||||||||    
T  18986615 ctcttttgttgctaaagatgaaaaagtcatatctcagg 18986652  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 379 - 416
Target Start/End: Original strand, 27462594 - 27462631
Alignment:
Q  379 ctcttttgttgctgaagacgaaaaagtcatatctcagg 416  Q
    |||||||||| ||||||| |||||||||||||||||||    
T  27462594 ctcttttgtttctgaagatgaaaaagtcatatctcagg 27462631  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 379 - 416
Target Start/End: Complemental strand, 27520901 - 27520864
Alignment:
Q  379 ctcttttgttgctgaagacgaaaaagtcatatctcagg 416  Q
    |||||||||||||||||| |||||||||||||| ||||    
T  27520901 ctcttttgttgctgaagatgaaaaagtcatatcgcagg 27520864  T

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Target: chr3 (Bit Score: 196; Significance: 1e-106; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 196; E-Value: 1e-106
Query Start/End: Original strand, 8 - 303
Target Start/End: Original strand, 25518581 - 25518877
Alignment:
Q  8 gctgtgtctctgatccatgcacctcgccagatcaatccattccggtaaaagggctgtcaactgctttgcagcctctgcctccaatcaggagatgtatatc 107  Q
    |||||||| ||||||||||||||| ||| |||||| | || ||||| ||||||  ||| |||||||||| |||||||||||| |||||||||||||||||    
T  25518581 gctgtgtcgctgatccatgcaccttgccggatcaagctatgccggttaaagggtcgtcgactgctttgccgcctctgcctccgatcaggagatgtatatc 25518680  T
Q  108 tgaagttattgatccttctgaggttaaagaagcagttgctcgttatttgaactctgctgaaaaaaccacccctgaatctgattcaatggtatgtgttgaa 207  Q
    |||||||||||||||||  ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  25518681 tgaagttattgatcctttggaggttaaagaagcagttgcttgttatttgaactctgctgaaaaaaccacccctgaatctgattcaatggtatgtgttgaa 25518780  T
Q  208 acttgtgtttcttgctaaaaaagtaatc-nnnnnnngatttggaataatgggttttgtttgttatttgtagaggcttaaaaggatgaaggatcggtt 303  Q
    ||||||||||||||||||||||||||||         ||||||||| |||||||||||||||| |||||||||||||||||||||||||||||||||    
T  25518781 acttgtgtttcttgctaaaaaagtaatctttttttatatttggaatcatgggttttgtttgttttttgtagaggcttaaaaggatgaaggatcggtt 25518877  T

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Target: chr3; HSP #2
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 379 - 416
Target Start/End: Original strand, 25519019 - 25519056
Alignment:
Q  379 ctcttttgttgctgaagacgaaaaagtcatatctcagg 416  Q
    |||||||||||||||||| |||||||||||||||||||    
T  25519019 ctcttttgttgctgaagatgaaaaagtcatatctcagg 25519056  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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