View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF20655_high_9 (Length: 391)
Name: NF20655_high_9
Description: NF20655
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20655_high_9 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 347; Significance: 0; HSPs: 10)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 347; E-Value: 0
Query Start/End: Original strand, 1 - 372
Target Start/End: Complemental strand, 1758243 - 1757870
Alignment:
| Q |
1 |
gctaagagcattcccgcggagactgaaaggaagtgtaatggcagagaagccattacgggtgagattgcttgcgtcaaaagaatgcttcttgagtgatggt |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1758243 |
gctaagagcattcccgcggagactgaaaggaagtgtaatggcggagaagccattacgggtgagattgcttgcgtcaaaagaatgcttcttgagtgatggt |
1758144 |
T |
|
| Q |
101 |
tggtgagcagatgatgatgatggtgaacagcgtttgacagagtttttgtgagagtgatgatgaagcattgatgatgttggaataatcatggattgtttct |
200 |
Q |
| |
|
|||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1758143 |
tggtgagcagatgatgatgatggtgaacggcgtttgacagagtttttgtgagagtgatgatgaagcattgatgatgttggaataatcatggattgtttct |
1758044 |
T |
|
| Q |
201 |
gtttgtgagggatcaacaaggattcttgttgaatctgtaaatcacccattcttctgaactcttttc--ttttgtttttagatttgaatttgaactttggt |
298 |
Q |
| |
|
|||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||| |
|
|
| T |
1758043 |
gtttgtgagggatcaacatggattcttgttgaatctgtaaatcacccattcttctgaactgttttcttttttgtttttagatttgaatttgaactttggt |
1757944 |
T |
|
| Q |
299 |
tgtaaagtaagtgtgagtcgcaaagagttatgaacaaagagggatggtttgagtatatatataggagatggtat |
372 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1757943 |
tgtaaagtaagtgtgagtcgcaaagagttatgaacaaagagggatggtttgagtatatatataggagatggtat |
1757870 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 207; E-Value: 1e-113
Query Start/End: Original strand, 1 - 323
Target Start/End: Original strand, 29568374 - 29568707
Alignment:
| Q |
1 |
gctaagagcattcccgcggagactgaaaggaagtgtaatggcagagaagccattacgggtgagattgcttgcgtcaaaagaatgcttcttgagtgatggt |
100 |
Q |
| |
|
||||||||||||||| |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||||| |||| || |
|
|
| T |
29568374 |
gctaagagcattcccacggagactgaaaggaagtgtaatggcggagaagccattacgggtgagattgcttgcgtcgaaagaatgcttcttggatgatagt |
29568473 |
T |
|
| Q |
101 |
tggtgagcagatgatgatgatggtgaacagcgtttgacagagtttttgtgagagtgat---------gatgaagcattgatgatgttggaataatcatgg |
191 |
Q |
| |
|
||||||||||| ||||||||||||||| |||||||| |||||||||||||| ||||| ||||||||||||||||||||||||||||||||| |
|
|
| T |
29568474 |
tggtgagcagaagatgatgatggtgaatggcgtttgaaagagtttttgtgagtgtgatgatgatgatgatgaagcattgatgatgttggaataatcatgg |
29568573 |
T |
|
| Q |
192 |
attgtttctgtttgtgagggatcaacaaggattcttgttgaatctgtaaatcacccattcttctgaactcttttc--ttttgtttttagatttgaatttg |
289 |
Q |
| |
|
||||||||||||||||||||||||||| |||||||||||||||||||| ||||| |||| ||||||| | |||| |||||||||| |||||||||||| |
|
|
| T |
29568574 |
attgtttctgtttgtgagggatcaacatggattcttgttgaatctgtagatcactcatttttctgaattgctttcttttttgtttttggatttgaatttg |
29568673 |
T |
|
| Q |
290 |
aactttggttgtaaagtaagtgtgagtcgcaaag |
323 |
Q |
| |
|
|| |||||||||||||||||||||||| |||||| |
|
|
| T |
29568674 |
aattttggttgtaaagtaagtgtgagtggcaaag |
29568707 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 160; E-Value: 4e-85
Query Start/End: Original strand, 4 - 323
Target Start/End: Original strand, 29569708 - 29570015
Alignment:
| Q |
4 |
aagagcattcccgcggagactgaaaggaagtgtaatggcagagaagccattacgggtgagattgcttgcgtcaaaagaatgcttcttgagtgatggttgg |
103 |
Q |
| |
|
||||||||| || |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |||||||||||||| |||| ||||| |
|
|
| T |
29569708 |
aagagcattgccacggagactgaaaggaagtgtaatggcggagaagccattacgggtgagattgcttgcgtcggaagaatgcttcttggatgatagttgg |
29569807 |
T |
|
| Q |
104 |
tgagcagatgatgatgatggtgaacagcgtttgacagagtttttgtgagagtgatgatgaagcattgatgatgttggaataatcatggattgtttctgtt |
203 |
Q |
| |
|
||||||||||||||||||||||||| ||||||||||||||| ||||||| | |||||||||||||||||||||||||||||| |||| |
|
|
| T |
29569808 |
tgagcagatgatgatgatggtgaacggcgtttgacagagttgttgtgagtg--------------tgatgatgttggaataatcatggattgtttgtgtt |
29569893 |
T |
|
| Q |
204 |
tgtgagggatcaacaaggattcttgttgaatctgtaaatcacccattcttctgaactcttttc--ttttgtttttagatttgaatttgaactttggttgt |
301 |
Q |
| |
|
||||||||||||| | |||||||||||||||||||| | ||| | ||||||| | | ||||| |||||||||| ||||||||||||||||||||| || |
|
|
| T |
29569894 |
tgtgagggatcaaaatggattcttgttgaatctgtagaccactcgttcttctagattgttttcttttttgtttttggatttgaatttgaactttggtagt |
29569993 |
T |
|
| Q |
302 |
aaagtaagtgtgagtcgcaaag |
323 |
Q |
| |
|
||||| ||||||||| |||||| |
|
|
| T |
29569994 |
aaagttagtgtgagtggcaaag |
29570015 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 132; E-Value: 2e-68
Query Start/End: Original strand, 1 - 207
Target Start/End: Complemental strand, 29168350 - 29168141
Alignment:
| Q |
1 |
gctaagagcattcccgcggagactgaaaggaagtgtaatggcagagaagccattacgggtgagattgcttgcgtcaaaagaatgcttcttgagtgatggt |
100 |
Q |
| |
|
||||||||||||||| ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| ||||||||||| ||| |||| || |
|
|
| T |
29168350 |
gctaagagcattcccacggagactgaaaggaagtgtaatggtggagaagccattacgggtgagattgcttgcgttgaaagaatgcttattggatgatagt |
29168251 |
T |
|
| Q |
101 |
tggtgagcagatgatgatgatggtgaacagcgtttgacagagtttttgtgagag---tgatgatgaagcattgatgatgttggaataatcatggattgtt |
197 |
Q |
| |
|
||||||||||| |||||||||||||||| |||||||||||||| ||||||| | |||||||||||||||||||||||||||||||||||| ||||| |
|
|
| T |
29168250 |
tggtgagcagaagatgatgatggtgaacgacgtttgacagagttgttgtgagtgtgatgatgatgaagcattgatgatgttggaataatcatgctttgtt |
29168151 |
T |
|
| Q |
198 |
tctgtttgtg |
207 |
Q |
| |
|
|||||||||| |
|
|
| T |
29168150 |
tctgtttgtg |
29168141 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 114; E-Value: 1e-57
Query Start/End: Original strand, 1 - 157
Target Start/End: Complemental strand, 29425391 - 29425232
Alignment:
| Q |
1 |
gctaagagcattcccgcggagactgaaaggaagtgtaatggcagagaagccattacgggtgagattgcttgcgtcaaaagaatgcttcttgagtgatggt |
100 |
Q |
| |
|
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||| |
|
|
| T |
29425391 |
gctaagagcattcccacggagactgaaaggaagtgtaatggcagagaagccattacgcatgagattgcttgcgtcaaaagaatgcttcttggatgatggt |
29425292 |
T |
|
| Q |
101 |
tggtgagcagatgatgatgat---ggtgaacagcgtttgacagagtttttgtgagagtga |
157 |
Q |
| |
|
||||||||||||||||||||| ||||||| ||||||||||||||| ||||||| |||| |
|
|
| T |
29425291 |
tggtgagcagatgatgatgatggtggtgaacggcgtttgacagagttgttgtgagtgtga |
29425232 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 108; E-Value: 4e-54
Query Start/End: Original strand, 4 - 163
Target Start/End: Complemental strand, 27918742 - 27918583
Alignment:
| Q |
4 |
aagagcattcccgcggagactgaaaggaagtgtaatggcagagaagccattacgggtgagattgcttgcgtcaaaagaatgcttcttgagtgatggttgg |
103 |
Q |
| |
|
|||||| || || |||||||||||||||||||||||||| |||||||||||||||||||||||||||||| || |||||||||||||| |||| ||||| |
|
|
| T |
27918742 |
aagagcgttgccacggagactgaaaggaagtgtaatggcggagaagccattacgggtgagattgcttgcgccagaagaatgcttcttggatgatagttgg |
27918643 |
T |
|
| Q |
104 |
tgagcagatgatgatgatggtgaacagcgtttgacagagtttttgtgagagtgatgatga |
163 |
Q |
| |
|
|||||||| |||||||||||||||| ||||||||||||||| ||||||| |||||||||| |
|
|
| T |
27918642 |
tgagcagaagatgatgatggtgaactgcgtttgacagagttgttgtgagtgtgatgatga |
27918583 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #7
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 215 - 332
Target Start/End: Complemental strand, 27918573 - 27918459
Alignment:
| Q |
215 |
aacaaggattcttgttgaatctgtaaatcacccattcttctgaactcttttcttttgtttttagatttgaatttgaactttggttgtaaagtaagtgtga |
314 |
Q |
| |
|
|||| |||||||||||||||||||| ||||| |||||| ||||| | ||| || || |||| ||||||||||||||||||||||| ||||||||| ||| |
|
|
| T |
27918573 |
aacatggattcttgttgaatctgtagatcactcattctgctgaattgttt-ctgtt--ttttggatttgaatttgaactttggttgcaaagtaagtctga |
27918477 |
T |
|
| Q |
315 |
gtcgcaaagagttatgaa |
332 |
Q |
| |
|
|| ||||||||||||||| |
|
|
| T |
27918476 |
gtggcaaagagttatgaa |
27918459 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #8
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 201 - 359
Target Start/End: Complemental strand, 29166929 - 29166788
Alignment:
| Q |
201 |
gtttgtgagggatcaacaaggattcttgttgaatctgtaaatcacccattcttctgaactcttttcttttgtttttagatttgaatttgaactttggttg |
300 |
Q |
| |
|
||||||||||||||| || |||||||||||||||||||| ||||| ||||||||| || | ||||||||| | || |||||||| |
|
|
| T |
29166929 |
gtttgtgagggatcatcatggattcttgttgaatctgtagatcactcattcttctcaattgttttcttttttgtt-----------------tttggttg |
29166847 |
T |
|
| Q |
301 |
taaagtaagtgtgagtcgcaaagagttatgaacaaagagggatggtttgagtatatata |
359 |
Q |
| |
|
|||||||||||||||| ||||||||||||||| ||||||||| |||| ||||||||||| |
|
|
| T |
29166846 |
taaagtaagtgtgagtggcaaagagttatgaaaaaagagggaaggttggagtatatata |
29166788 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #9
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 204 - 258
Target Start/End: Complemental strand, 29425236 - 29425182
Alignment:
| Q |
204 |
tgtgagggatcaacaaggattcttgttgaatctgtaaatcacccattcttctgaa |
258 |
Q |
| |
|
||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
29425236 |
tgtgagggatcaacatggattcttgttgaatctgtaaatcacccattcttctgaa |
29425182 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #10
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 293 - 361
Target Start/End: Complemental strand, 29425176 - 29425109
Alignment:
| Q |
293 |
tttggttgtaaagtaagtgtgagtcgcaaagagttatgaacaaagagggatggtttgagtatatatata |
361 |
Q |
| |
|
|||||||||||||||||||||||| ||||||||||||||| ||||||||| ||||||| |||||||||| |
|
|
| T |
29425176 |
tttggttgtaaagtaagtgtgagtggcaaagagttatgaa-aaagagggaaggtttgattatatatata |
29425109 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 285; Significance: 1e-160; HSPs: 5)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 285; E-Value: 1e-160
Query Start/End: Original strand, 1 - 366
Target Start/End: Complemental strand, 27482234 - 27481867
Alignment:
| Q |
1 |
gctaagagcattcccgcggagactgaaaggaagtgtaatggcagagaagccattacgggtgagattgcttgcgtcaaaagaatgcttcttgagtgatggt |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
|
|
| T |
27482234 |
gctaagagcattcccgcggagactgaaaggaattgtaatggcagagaagccattacgggtgagattgcttgcgtcaaaagaatgcttcttggatgatggt |
27482135 |
T |
|
| Q |
101 |
tggtgagcagatgatgatgatggtgaacagcgtttgacagagtttttgtgagagtgatgatgaagcattgatgatgttggaataatcatggattgtttct |
200 |
Q |
| |
|
|||||| |||||||||||||||||||| ||||||||||| ||| ||||||| |||||||||| |||||||||||||||||||||||||||||||||||| |
|
|
| T |
27482134 |
tggtgataagatgatgatgatggtgaacggcgtttgacagtgttgttgtgagtgtgatgatgaggcattgatgatgttggaataatcatggattgtttct |
27482035 |
T |
|
| Q |
201 |
gtttgtgagggatcaacaaggattcttgttgaatctgtaaatcacccattcttctgaactcttt--tcttttgtttttagatttgaatttgaactttggt |
298 |
Q |
| |
|
|||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| | ||| | |||||||||||||||||||||||| ||||||| |
|
|
| T |
27482034 |
gtttgtgagggatcaacatggattcttgttgaatctgtaaatcacccattcttctgaattgttttgttttttgtttttagatttgaatttgagctttggt |
27481935 |
T |
|
| Q |
299 |
tgtaaagtaagtgtgagtcgcaaagagttatgaacaaagagggatggtttgagtatatatataggaga |
366 |
Q |
| |
|
|||||||||||||||||| ||||||||||||||| ||||||| ||||||||||||||||||||||||| |
|
|
| T |
27481934 |
tgtaaagtaagtgtgagtggcaaagagttatgaaaaaagaggtatggtttgagtatatatataggaga |
27481867 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 284; E-Value: 1e-159
Query Start/End: Original strand, 1 - 361
Target Start/End: Complemental strand, 27462095 - 27461733
Alignment:
| Q |
1 |
gctaagagcattcccgcggagactgaaaggaagtgtaatggcagagaagccattacgggtgagattgcttgcgtcaaaagaatgcttcttgagtgatggt |
100 |
Q |
| |
|
|||||||||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
|
|
| T |
27462095 |
gctaagagcatttccacggagactgaaaggaagtgtaatggcagagaagccattacgggtgagattgcttgcgtcaaaagaatgcttcttggatgatggt |
27461996 |
T |
|
| Q |
101 |
tggtgagcagatgatgatgatggtgaacagcgtttgacagagtttttgtgagagtgatgatgaagcattgatgatgttggaataatcatggattgtttct |
200 |
Q |
| |
|
|||||| |||||||||||||||||||| ||||||||||| ||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
27461995 |
tggtgataagatgatgatgatggtgaacggcgtttgacagtgttgttgtgagtgtgatgatgaagcattgatgatgttggaataatcatggattgtttct |
27461896 |
T |
|
| Q |
201 |
gtttgtgagggatcaacaaggattcttgttgaatctgtaaatcacccattcttctgaactcttt--tcttttgtttttagatttgaatttgaactttggt |
298 |
Q |
| |
|
|||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| | ||| |||||||||||||||||||||||||||||||| | |
|
|
| T |
27461895 |
gtttgtgagggatcaacatggattcttgttgaatctgtaaatcacccattcttctgaattgttttctcttttgtttttagatttgaatttgaactttgat |
27461796 |
T |
|
| Q |
299 |
tgtaaagtaagtgtgagtcgcaaagagttatgaacaaagagggatggtttgagtatatatata |
361 |
Q |
| |
|
|||||||||||||||||| ||||||||||||||| ||||||||||||||||||| |||||||| |
|
|
| T |
27461795 |
tgtaaagtaagtgtgagtggcaaagagttatgaaaaaagagggatggtttgagtgtatatata |
27461733 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 237; E-Value: 1e-131
Query Start/End: Original strand, 1 - 322
Target Start/End: Complemental strand, 18986195 - 18985872
Alignment:
| Q |
1 |
gctaagagcattcccgcggagactgaaaggaagtgtaatggcagagaagccattacgggtgagattgcttgcgtcaaaagaatgcttcttgagtgatggt |
100 |
Q |
| |
|
|||||||| |||||| ||||||||||||| |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| ||| ||| |
|
|
| T |
18986195 |
gctaagagtattcccacggagactgaaagaaagtgtaatggcggagaagccattacgggtgagattgcttgcgtcaaaagaatgcttcttggatgacggt |
18986096 |
T |
|
| Q |
101 |
tggtgagcagatgatgatgatggtgaacagcgtttgacagagtttttgtgagagtgatgatgaagcattgatgatgttggaataatcatggattgtttct |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||| ||||||||| ||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
18986095 |
tggtgagcagatgatgatgatggtgaacagagtttgacagtgttgttgtgagggtgatgatgaagcattgatgatgttggaataatcatggattgtttct |
18985996 |
T |
|
| Q |
201 |
gtttgtgagggatcaacaaggattcttgttgaatctgtaaatcacccattcttctgaactcttttc--ttttgtttttagatttgaatttgaactttggt |
298 |
Q |
| |
|
||||||||||||||| || ||||||||||||||| ||||||||||||||||||||||| | ||||| |||| ||||||||||||||||||||||||||| |
|
|
| T |
18985995 |
gtttgtgagggatcaccatggattcttgttgaatttgtaaatcacccattcttctgaattgttttcttttttctttttagatttgaatttgaactttggt |
18985896 |
T |
|
| Q |
299 |
tgtaaagtaagtgtgagtcgcaaa |
322 |
Q |
| |
|
||||||||||||||||| ||||| |
|
|
| T |
18985895 |
cgtaaagtaagtgtgagtggcaaa |
18985872 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 234; E-Value: 1e-129
Query Start/End: Original strand, 1 - 270
Target Start/End: Original strand, 27521340 - 27521609
Alignment:
| Q |
1 |
gctaagagcattcccgcggagactgaaaggaagtgtaatggcagagaagccattacgggtgagattgcttgcgtcaaaagaatgcttcttgagtgatggt |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
|
|
| T |
27521340 |
gctaagagcattcccgcggagactgaaaggaagtgtaatggcagagaagccattacgggtgagattgcttgcgtcaaaagaatgcttcttggatgatggt |
27521439 |
T |
|
| Q |
101 |
tggtgagcagatgatgatgatggtgaacagcgtttgacagagtttttgtgagagtgatgatgaagcattgatgatgttggaataatcatggattgtttct |
200 |
Q |
| |
|
||||| |||||||||||||||||||||| ||||||||||||||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
27521440 |
tggtgggcagatgatgatgatggtgaacggcgtttgacagagttgttgtgagtgtgatgatgaagcattgatgatgttggaataatcatggattgtttct |
27521539 |
T |
|
| Q |
201 |
gtttgtgagggatcaacaaggattcttgttgaatctgtaaatcacccattcttctgaactcttttctttt |
270 |
Q |
| |
|
|||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| | ||||||||| |
|
|
| T |
27521540 |
gtttgtgagggatcaacatggattcttgttgaatctgtaaatcacccattcttctgaattgttttctttt |
27521609 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 293 - 355
Target Start/End: Original strand, 27521609 - 27521671
Alignment:
| Q |
293 |
tttggttgtaaagtaagtgtgagtcgcaaagagttatgaacaaagagggatggtttgagtata |
355 |
Q |
| |
|
|||| ||||||||||||||||||| ||||||||||||||| |||||||||||||||||||||| |
|
|
| T |
27521609 |
tttgattgtaaagtaagtgtgagtggcaaagagttatgaaaaaagagggatggtttgagtata |
27521671 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 168; Significance: 6e-90; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 168; E-Value: 6e-90
Query Start/End: Original strand, 4 - 234
Target Start/End: Complemental strand, 25518576 - 25518343
Alignment:
| Q |
4 |
aagagcattcccgcggagactgaaaggaagtgtaatggcagagaagccattacgggtgagattgcttgcgtcaaaagaatgcttcttgagtgatggttgg |
103 |
Q |
| |
|
||||||||| || || ||||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||||| |||||||||| |
|
|
| T |
25518576 |
aagagcattaccacgaagactgaaaggaagtgtaatggcggagaagccattacgggtgagattgcttgcgtcgaaagaatgcttcttggatgatggttgg |
25518477 |
T |
|
| Q |
104 |
tgagcagatgatgatgatggtgaacagcgtttgacagagtttttgtgagagtgatgatg---aagcattgatgatgttggaataatcatggattgtttct |
200 |
Q |
| |
|
|||| ||| |||||||||||||||| ||||||||||||||| ||||||| ||||||||| |||||||||||||||||||||||||||||||||||||| |
|
|
| T |
25518476 |
tgaggagaagatgatgatggtgaacggcgtttgacagagttgttgtgagtgtgatgatgaccaagcattgatgatgttggaataatcatggattgtttct |
25518377 |
T |
|
| Q |
201 |
gtttgtgagggatcaacaaggattcttgttgaat |
234 |
Q |
| |
|
|||||||||||||||||| ||||||||||||||| |
|
|
| T |
25518376 |
gtttgtgagggatcaacatggattcttgttgaat |
25518343 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 279 - 359
Target Start/End: Complemental strand, 25518344 - 25518264
Alignment:
| Q |
279 |
atttgaatttgaactttggttgtaaagtaagtgtgagtcgcaaagagttatgaacaaagagggatggtttgagtatatata |
359 |
Q |
| |
|
||||||||||||| ||| |||||||||||||||||||| |||||||||| |||| ||||||||| |||||||||||||||| |
|
|
| T |
25518344 |
atttgaatttgaatttttgttgtaaagtaagtgtgagtggcaaagagttgtgaaaaaagagggaaggtttgagtatatata |
25518264 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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