View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF20655_low_1 (Length: 889)
Name: NF20655_low_1
Description: NF20655
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20655_low_1 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 274; Significance: 1e-153; HSPs: 21)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 274; E-Value: 1e-153
Query Start/End: Original strand, 1 - 303
Target Start/End: Original strand, 1758238 - 1758540
Alignment:
| Q |
1 |
cttagccgctgtgtctctgatccatgcacctcgccagatcaatccattccggtaaaagggctgtcaactgctttgcagcctctgcctccaatcaggagat |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1758238 |
cttagccgctgtgtctctgatccatgcacctcgccagatcaatccattccggtaaaagggctatcaactgctttgcagcctctgcctccaatcaggagat |
1758337 |
T |
|
| Q |
101 |
gtatatctgaagttattgatccttctgaggttaaagaagcagttgctcgttatttgaactctgctgaaaaaaccacccctgaatctgattcaatggtatg |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1758338 |
gtatatctgaagttattgatccttctgaggttaaagaagcagttgctcgttatttgaactctgctgaaaaaaccacccctgaatctgattcaatggtatg |
1758437 |
T |
|
| Q |
201 |
tgttgaaacttgtgtttcttgctaaaaaagtaatcnnnnnnngatttggaataatgggttttgtttgttatttgtagaggcttaaaaggatgaaggatcg |
300 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
|
|
| T |
1758438 |
tgttgaaacttgtgtttcttgctaaaaaagtaatctttttttgatttggaataatgggttttgtttgttttttgtagaggcttaaaaggatgaaggatcg |
1758537 |
T |
|
| Q |
301 |
gtt |
303 |
Q |
| |
|
||| |
|
|
| T |
1758538 |
gtt |
1758540 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 273; E-Value: 1e-152
Query Start/End: Original strand, 553 - 833
Target Start/End: Original strand, 1758778 - 1759058
Alignment:
| Q |
553 |
gtaaaaatgctaaattttaagacaagaacatactgaagaatgaagatgacatattcaattatagtttcagattaatagtttttatgctgaacaattgatt |
652 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
|
|
| T |
1758778 |
gtaaaaatgctaaattttaagacaagaacatactgaagaatgaagatgacatattcaattatagtttcagattaatagtttttatgctgaacaattcatt |
1758877 |
T |
|
| Q |
653 |
tttgtttttgtaggatgaattggaaaatgattatgaagaagctgttagtgtggagtgggttgataagtgtttaagccttactttcaaatatccatgtggc |
752 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
|
|
| T |
1758878 |
tttgtttttgtaggatgaattggaaaatgattatgaagaagctgttagtgtggagtgggttgataagtgtttaagccttactttcaaatgtccatgtggc |
1758977 |
T |
|
| Q |
753 |
aagggatatgaggttctaatctgtgcaaacaattgttactacaagctgatctagaagaatcagtatgcttaattgattcct |
833 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1758978 |
aagggatatgaggttctaatctgtgcaaacaattgttactacaagctgatctagaagaatcagtatgcttaattgattcct |
1759058 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 226; E-Value: 1e-124
Query Start/End: Original strand, 1 - 303
Target Start/End: Complemental strand, 29568379 - 29568072
Alignment:
| Q |
1 |
cttagccgctgtgtctctgatccatgcacctcgccagatcaatccattccggtaaaagggctgtcaactgctttgcagcctctgcctccaatcaggagat |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||| ||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||| |||| |
|
|
| T |
29568379 |
cttagccgctgtgtctctgatccatgcaccttgccggatcaatccatgccggtaaaagggctgtcaactgctttgcagcctctgcctccgatcagtagat |
29568280 |
T |
|
| Q |
101 |
gtatatctgaagttattgatccttctgaggttaaagaagcagttgctcgttatttgaactctgctgaaaaaaccacccctgaatctgattcaatggtatg |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
|
|
| T |
29568279 |
gtatatctgaagttattgatccttctgaggttaaagaagcagttgctcgttatttgaactctgctgaaaaaaccacccctgaatctgattcattggtatg |
29568180 |
T |
|
| Q |
201 |
tgttgaaacttgtgtttcttgctaaaaaagtaatcnnnnnnnga-tttggaataatgggttttgtttg----ttatttgtagaggcttaaaaggatgaag |
295 |
Q |
| |
|
||||||||| ||||||||||||||||||||||||| | ||||||||||||||||||||||| || ||||||||||||||||||||||||| |
|
|
| T |
29568179 |
tgttgaaacatgtgtttcttgctaaaaaagtaatcttttttttattttggaataatgggttttgtttgttttttctttgtagaggcttaaaaggatgaag |
29568080 |
T |
|
| Q |
296 |
gatcggtt |
303 |
Q |
| |
|
|||||||| |
|
|
| T |
29568079 |
gatcggtt |
29568072 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 195; E-Value: 1e-105
Query Start/End: Original strand, 1 - 303
Target Start/End: Original strand, 29168345 - 29168652
Alignment:
| Q |
1 |
cttagccgctgtgtctctgatccatgcacctcgccagatcaatccattccggtaaaagggctgtcaactgctttgcagcctctgcctccaatcaggagat |
100 |
Q |
| |
|
|||||| |||||||||||||||||||||||| ||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||| |||| |
|
|
| T |
29168345 |
cttagctgctgtgtctctgatccatgcaccttgccggatcaatccatgccggtaaaagggctgtcaactgctttgcagcctctgcctccgatcagtagat |
29168444 |
T |
|
| Q |
101 |
gtatatctgaagttattgatccttctgaggttaaagaagcagttgctcgttatttgaactctgctgaaaaaaccacccctgaatctgattcaatggtatg |
200 |
Q |
| |
|
|||||||||||||||||||||||||| ||||||||||||||||||||| ||||||||||||| |||||| |||||||||||||||||||||||||||||| |
|
|
| T |
29168445 |
gtatatctgaagttattgatccttctaaggttaaagaagcagttgctctttatttgaactcttctgaaagaaccacccctgaatctgattcaatggtatg |
29168544 |
T |
|
| Q |
201 |
tgttgaaacttgtgtttcttgctaaaaaagtaatc-----nnnnnnngatttggaataatgggttttgtttgttatttgtagaggcttaaaaggatgaag |
295 |
Q |
| |
|
|||||||| |||||||||||||||||||||||||| ||||||||| ||| |||| ||| ||||||||||||||||||||||||||| |
|
|
| T |
29168545 |
tgttgaaaattgtgtttcttgctaaaaaagtaatctattttttttttaatttggaatcttggtttttcattgatatttgtagaggcttaaaaggatgaag |
29168644 |
T |
|
| Q |
296 |
gatcggtt |
303 |
Q |
| |
|
|||||||| |
|
|
| T |
29168645 |
gatcggtt |
29168652 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 180; E-Value: 1e-96
Query Start/End: Original strand, 8 - 303
Target Start/End: Original strand, 27918747 - 27919045
Alignment:
| Q |
8 |
gctgtgtctctgatccatgcacctcgccagatcaatccattccggtaaaagggctgtcaactgctttgcagcctctgcctccaatcaggagatgtatatc |
107 |
Q |
| |
|
||||||| || ||||||||||| | ||||||||||||||||||||| |||||| ||| |||||||||| |||||| ||||| ||||||||||||||||| |
|
|
| T |
27918747 |
gctgtgtatccgatccatgcactttgccagatcaatccattccggttaaagggtcgtcgactgctttgccgcctctccctccgatcaggagatgtatatc |
27918846 |
T |
|
| Q |
108 |
tgaagttattgatccttctgaggttaaagaagcagttgctcgttatttgaactctgctgaaaaaaccacccctgaatctgattcaatggtatgtgttgaa |
207 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| || ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
|
|
| T |
27918847 |
tgaagttattgatccttctgaggttaaagaagcagtttcttgttatttgaactctgctgaaaaaaccacccctgaatctgattcaatggtgtgtgttgaa |
27918946 |
T |
|
| Q |
208 |
acttgtgtttcttgctaaaaaagtaatc---nnnnnnngatttggaataatgggttttgtttgttatttgtagaggcttaaaaggatgaaggatcggtt |
303 |
Q |
| |
|
|||||||||||||||||||||||||||| ||||||||| |||| |||| |||| | || |||||||||||||||||||||||||||||| |
|
|
| T |
27918947 |
acttgtgtttcttgctaaaaaagtaatctatttttttttatttggaatcatggtttttctttgattttcgtagaggcttaaaaggatgaaggatcggtt |
27919045 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 170; E-Value: 9e-91
Query Start/End: Original strand, 1 - 303
Target Start/End: Original strand, 29425386 - 29425699
Alignment:
| Q |
1 |
cttagccgctgtgtctctgatccatgcacctcgccagatcaatccattccggtaaaagggctgtcaactgctttgcagcctctgcctccaatcaggagat |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||| ||| |||||||||| ||||||||||||| ||||||||||||||||||||||||||| ||||| |||| |
|
|
| T |
29425386 |
cttagccgctgtgtctctgatccatgcaccttgccgaatcaatccatgccggtaaaagggccgtcaactgctttgcagcctctgcctccgatcagtagat |
29425485 |
T |
|
| Q |
101 |
gtatatctgaagttattgatccttctgaggttaaagaagcagttgctcgttatttgaactctgctgaaaaaaccacccctgaatctgattcaatggtatg |
200 |
Q |
| |
|
|||||| ||||||||||||||||| | ||||||||||||||||| || ||||||||||||||||||||||||| || ||||||||||||||| ||||||| |
|
|
| T |
29425486 |
gtatatatgaagttattgatccttataaggttaaagaagcagtttcttgttatttgaactctgctgaaaaaactacacctgaatctgattcattggtatg |
29425585 |
T |
|
| Q |
201 |
tgt----------tgaaacttgtgtttcttgctaaaaaagtaatcnnnnnnngatttggaataatgggttttgtttg-ttatttgtagaggcttaaaagg |
289 |
Q |
| |
|
||| |||||||||||||||||||||||||||||||| |||||| || |||||||||| ||| || ||||||||||||||||||| |
|
|
| T |
29425586 |
tgttggattattatgaaacttgtgtttcttgctaaaaaagtaatcttttttttatttgggatcatgggttttggttgtttttttgtagaggcttaaaagg |
29425685 |
T |
|
| Q |
290 |
atgaaggatcggtt |
303 |
Q |
| |
|
|||||||||||||| |
|
|
| T |
29425686 |
atgaaggatcggtt |
29425699 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #7
Raw Score: 140; E-Value: 7e-73
Query Start/End: Original strand, 650 - 833
Target Start/End: Complemental strand, 38867046 - 38866863
Alignment:
| Q |
650 |
atttttgtttttgtaggatgaattggaaaatgattatgaagaagctgttagtgtggagtgggttgataagtgtttaagccttactttcaaatatccatgt |
749 |
Q |
| |
|
|||| ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| | ||||||| |
|
|
| T |
38867046 |
atttatgtttttgtaggatgaattgggaaatgattatgaagaagctgttagtgtggagtgggttgataagagtttaagccttactttcaagtgtccatgt |
38866947 |
T |
|
| Q |
750 |
ggcaagggatatgaggttctaatctgtgcaaacaattgttactacaagctgatctagaagaatcagtatgcttaattgattcct |
833 |
Q |
| |
|
||||||||||||||||||||||| |||||||||||||||||||||||| || ||||||||||||| ||| ||||||||||||| |
|
|
| T |
38866946 |
ggcaagggatatgaggttctaatatgtgcaaacaattgttactacaagttggtctagaagaatcaaaatgtttaattgattcct |
38866863 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #8
Raw Score: 136; E-Value: 2e-70
Query Start/End: Original strand, 5 - 235
Target Start/End: Original strand, 38157364 - 38157592
Alignment:
| Q |
5 |
gccgctgtgtctctgatccatgcacctcgccagatcaatccattccggtaaaagggctgtcaactgctttgcagcctctgcctccaatcaggagatgtat |
104 |
Q |
| |
|
||||||||||| ||| |||||| || ||| ||||||||||| ||||| |||||| |||||||| ||||| ||||||||||| ||||||||||||||| |
|
|
| T |
38157364 |
gccgctgtgtcaatgacccatgc--ctggccggatcaatccatgccggttaaagggtcgtcaactggtttgccgcctctgcctctaatcaggagatgtat |
38157461 |
T |
|
| Q |
105 |
atctgaagttattgatccttctgaggttaaagaagcagttgctcgttatttgaactctgctgaaaaaaccacccctgaatctgattcaatggtatgtgtt |
204 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| ||||| || |||||||||||||||||||||||| || |||||||||||||||||||||||||| |
|
|
| T |
38157462 |
atctgaagttattgatccttctgaggttaaagaaacagtttcttgttatttgaactctgctgaaaaaattacatctgaatctgattcaatggtatgtgtt |
38157561 |
T |
|
| Q |
205 |
gaaacttgtgtttcttgctaaaaaagtaatc |
235 |
Q |
| |
|
||||||||| ||||||||||||| ||||||| |
|
|
| T |
38157562 |
gaaacttgtttttcttgctaaaatagtaatc |
38157592 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #9
Raw Score: 135; E-Value: 7e-70
Query Start/End: Original strand, 617 - 819
Target Start/End: Original strand, 29250415 - 29250617
Alignment:
| Q |
617 |
tttcagattaatagtttttatgctgaacaattgatttttgtttttgtaggatgaattggaaaatgattatgaagaagctgttagtgtggagtgggttgat |
716 |
Q |
| |
|
|||||||||||| ||||||||||||||||||| |||| ||||||||||||||||||||| |||||||||| ||||||||||||||||||||||| ||||| |
|
|
| T |
29250415 |
tttcagattaattgtttttatgctgaacaattcatttatgtttttgtaggatgaattgggaaatgattataaagaagctgttagtgtggagtggattgat |
29250514 |
T |
|
| Q |
717 |
aagtgtttaagccttactttcaaatatccatgtggcaagggatatgaggttctaatctgtgcaaacaattgttactacaagctgatctagaagaatcagt |
816 |
Q |
| |
|
|||||||| |||||||||||||| | |||||| ||||||||||||||||||||||| ||||| |||||||| ||||||||| || | || |||||||||| |
|
|
| T |
29250515 |
aagtgtttgagccttactttcaagtgtccatgcggcaagggatatgaggttctaatatgtgctaacaattgctactacaagttggtttacaagaatcagt |
29250614 |
T |
|
| Q |
817 |
atg |
819 |
Q |
| |
|
||| |
|
|
| T |
29250615 |
atg |
29250617 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #10
Raw Score: 121; E-Value: 2e-61
Query Start/End: Original strand, 650 - 814
Target Start/End: Original strand, 29426336 - 29426500
Alignment:
| Q |
650 |
atttttgtttttgtaggatgaattggaaaatgattatgaagaagctgttagtgtggagtgggttgataagtgtttaagccttactttcaaatatccatgt |
749 |
Q |
| |
|
|||| |||||||||||||||||| || ||||||||||||||||||||||||||||||||||||||||||| |||||| |||||||||||| | ||||||| |
|
|
| T |
29426336 |
atttatgtttttgtaggatgaatcgggaaatgattatgaagaagctgttagtgtggagtgggttgataagagtttaaaccttactttcaagtgtccatgt |
29426435 |
T |
|
| Q |
750 |
ggcaagggatatgaggttctaatctgtgcaaacaattgttactacaagctgatctagaagaatca |
814 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||| || | || |||||||| |
|
|
| T |
29426436 |
ggcaagggatatgaggttctaatctgtgcaaacaattgttactacaagttggtgtaaaagaatca |
29426500 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #11
Raw Score: 115; E-Value: 6e-58
Query Start/End: Original strand, 645 - 831
Target Start/End: Original strand, 29169362 - 29169548
Alignment:
| Q |
645 |
aattgatttttgtttttgtaggatgaattggaaaatgattatgaagaagctgttagtgtggagtgggttgataagtgtttaagccttactttcaaatatc |
744 |
Q |
| |
|
|||| |||| || |||||||||||||||||| ||||||||||||||||||||| ||||| || ||| ||||||||||||||||||||||||||| | | |
|
|
| T |
29169362 |
aattcatttatgattttgtaggatgaattgggaaatgattatgaagaagctgtcagtgtagaatggattgataagtgtttaagccttactttcaggtgcc |
29169461 |
T |
|
| Q |
745 |
catgtggcaagggatatgaggttctaatctgtgcaaacaattgttactacaagctgatctagaagaatcagtatgcttaattgattc |
831 |
Q |
| |
|
|||||||||||||||||||| ||||||| |||||||||||||||||||||||| || ||||||||||||| |||| ||||||||||| |
|
|
| T |
29169462 |
catgtggcaagggatatgagattctaatatgtgcaaacaattgttactacaagttggtctagaagaatcattatgtttaattgattc |
29169548 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #12
Raw Score: 115; E-Value: 6e-58
Query Start/End: Original strand, 491 - 621
Target Start/End: Original strand, 29250127 - 29250257
Alignment:
| Q |
491 |
atactcttcctttcaagaattttgtgggcaatatgttagagttagaggctgcatattgaagggtaaaaatgctaaattttaagacaagaacatactgaag |
590 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| | ||||||||||||||||| ||||||||||||| |
|
|
| T |
29250127 |
atactcttcctttcaagaattttgtgggcaatatgttagagttagaggctgcatattaaagggtaagattgctaaattttaagacaggaacatactgaag |
29250226 |
T |
|
| Q |
591 |
aatgaagatgacatattcaattatagtttca |
621 |
Q |
| |
|
||||||||||||||||||||||||||||||| |
|
|
| T |
29250227 |
aatgaagatgacatattcaattatagtttca |
29250257 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #13
Raw Score: 114; E-Value: 2e-57
Query Start/End: Original strand, 645 - 814
Target Start/End: Complemental strand, 29566696 - 29566527
Alignment:
| Q |
645 |
aattgatttttgtttttgtaggatgaattggaaaatgattatgaagaagctgttagtgtggagtgggttgataagtgtttaagccttactttcaaatatc |
744 |
Q |
| |
|
|||| |||| |||||||| |||||||||||| ||||||||||||||||||||||||||| || ||| ||||| |||||||||||||||||||||| | || |
|
|
| T |
29566696 |
aattcatttatgtttttgcaggatgaattgggaaatgattatgaagaagctgttagtgtagaatggattgatgagtgtttaagccttactttcaagtgtc |
29566597 |
T |
|
| Q |
745 |
catgtggcaagggatatgaggttctaatctgtgcaaacaattgttactacaagctgatctagaagaatca |
814 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||| || | || |||||||| |
|
|
| T |
29566596 |
catgtggcaagggatatgaggttctaatctgtgcaaacaattgttactacaagttggtgtaaaagaatca |
29566527 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #14
Raw Score: 102; E-Value: 3e-50
Query Start/End: Original strand, 379 - 484
Target Start/End: Original strand, 1758676 - 1758781
Alignment:
| Q |
379 |
ctcttttgttgctgaagatgaaaaagtcatatctcaggtgcatgtcttgaatcttcaactgtgattgtctttttcctttggtttttaatttacagaatct |
478 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
|
|
| T |
1758676 |
ctcttttgttgctgaagatgaaaaagtcatatctcaggtgcatgtcttgaatcttcaactgtgattgtctttttcctttggtttataatttacagaatct |
1758775 |
T |
|
| Q |
479 |
atgtaa |
484 |
Q |
| |
|
|||||| |
|
|
| T |
1758776 |
atgtaa |
1758781 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #15
Raw Score: 94; E-Value: 2e-45
Query Start/End: Original strand, 645 - 818
Target Start/End: Original strand, 32432111 - 32432284
Alignment:
| Q |
645 |
aattgatttttgtttttgtaggatgaattggaaaatgattatgaagaagctgttagtgtggagtgggttgataagtgtttaagccttactttcaaatatc |
744 |
Q |
| |
|
|||| |||||||| ||||||||||| |||| | | ||||||||||||||||||||||| |||||| |||| |||||||||||||||| ||| | | || |
|
|
| T |
32432111 |
aattcatttttgtgtttgtaggatggtttggcagaagattatgaagaagctgttagtgtagagtggattgaaaagtgtttaagccttatttttaggtgtc |
32432210 |
T |
|
| Q |
745 |
catgtggcaagggatatgaggttctaatctgtgcaaacaattgttactacaagctgatctagaagaatcagtat |
818 |
Q |
| |
|
||||||||||||| |||||||||||||| |||||||||||||||||||||||| || | ||||||||||||||| |
|
|
| T |
32432211 |
catgtggcaaggggtatgaggttctaatatgtgcaaacaattgttactacaagttggtgtagaagaatcagtat |
32432284 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #16
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 379 - 451
Target Start/End: Original strand, 29425844 - 29425916
Alignment:
| Q |
379 |
ctcttttgttgctgaagatgaaaaagtcatatctcaggtgcatgtcttgaatcttcaactgtgattgtctttt |
451 |
Q |
| |
|
||||||||||||||| ||||||||||||||||||||||| |||||||||||| |||| ||||||||||||||| |
|
|
| T |
29425844 |
ctcttttgttgctgatgatgaaaaagtcatatctcaggtacatgtcttgaatattcagctgtgattgtctttt |
29425916 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #17
Raw Score: 53; E-Value: 6e-21
Query Start/End: Original strand, 379 - 451
Target Start/End: Original strand, 27919187 - 27919259
Alignment:
| Q |
379 |
ctcttttgttgctgaagatgaaaaagtcatatctcaggtgcatgtcttgaatcttcaactgtgattgtctttt |
451 |
Q |
| |
|
||||||| || |||||||||||||||||||||||||||| |||||||||||||||| |||||||||| ||||| |
|
|
| T |
27919187 |
ctcttttattactgaagatgaaaaagtcatatctcaggtacatgtcttgaatcttcgactgtgattgactttt |
27919259 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #18
Raw Score: 53; E-Value: 6e-21
Query Start/End: Original strand, 379 - 451
Target Start/End: Original strand, 29168743 - 29168815
Alignment:
| Q |
379 |
ctcttttgttgctgaagatgaaaaagtcatatctcaggtgcatgtcttgaatcttcaactgtgattgtctttt |
451 |
Q |
| |
|
|||| ||||||||||||||||||| |||||||||||||| ||||||||||||||| |||||||||||||||| |
|
|
| T |
29168743 |
ctctcttgttgctgaagatgaaaatgtcatatctcaggtatatgtcttgaatcttcgactgtgattgtctttt |
29168815 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #19
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 379 - 451
Target Start/End: Complemental strand, 29567930 - 29567858
Alignment:
| Q |
379 |
ctcttttgttgctgaagatgaaaaagtcatatctcaggtgcatgtcttgaatcttcaactgtgattgtctttt |
451 |
Q |
| |
|
|||| |||||||||||||||||||||||||||||||||| |||||||||||||| ||||||| |||||||| |
|
|
| T |
29567930 |
ctctcttgttgctgaagatgaaaaagtcatatctcaggtatatgtcttgaatcttggactgtgactgtctttt |
29567858 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #20
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 826 - 877
Target Start/End: Original strand, 1759281 - 1759332
Alignment:
| Q |
826 |
tgattcctgtatcatatttaaaccaaacatcattccaagaattatttagcca |
877 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||| || ||||| |
|
|
| T |
1759281 |
tgattcctgtatcatatttaaaccaaacatcattccaagaattgttgagcca |
1759332 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #21
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 448 - 515
Target Start/End: Complemental strand, 29567281 - 29567215
Alignment:
| Q |
448 |
tttttcctttggtttttaatttacagaatctatgtaagaataaatactcttcctttcaagaattttgt |
515 |
Q |
| |
|
|||||||||| ||||||| ||||| | ||||| ||||||||||||||||||||||||||||||||||| |
|
|
| T |
29567281 |
tttttccttttgttttta-tttaccggatctaggtaagaataaatactcttcctttcaagaattttgt |
29567215 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 230; Significance: 1e-126; HSPs: 20)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 230; E-Value: 1e-126
Query Start/End: Original strand, 1 - 303
Target Start/End: Original strand, 27462090 - 27462392
Alignment:
| Q |
1 |
cttagccgctgtgtctctgatccatgcacctcgccagatcaatccattccggtaaaagggctgtcaactgctttgcagcctctgcctccaatcaggagat |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||| || ||||||||||| ||||||||||||| ||||||||||||||||||||||||||| ||||| |||| |
|
|
| T |
27462090 |
cttagccgctgtgtctctgatccatgcacctttccggatcaatccatgccggtaaaagggccgtcaactgctttgcagcctctgcctccgatcagcagat |
27462189 |
T |
|
| Q |
101 |
gtatatctgaagttattgatccttctgaggttaaagaagcagttgctcgttatttgaactctgctgaaaaaaccacccctgaatctgattcaatggtatg |
200 |
Q |
| |
|
||||||||||||||||||||||| ||||||||||||||||||| |||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
27462190 |
gtatatctgaagttattgatcctactgaggttaaagaagcagtagctcgttatttgaactgtgctgaaaaaaccacccctgaatctgattcaatggtatg |
27462289 |
T |
|
| Q |
201 |
tgttgaaacttgtgtttcttgctaaaaaagtaatcnnnnnnngatttggaataatgggttttgtttgttatttgtagaggcttaaaaggatgaaggatcg |
300 |
Q |
| |
|
||||||||||||||||||||||||||||||||| | ||||||||||| ||||||||||||||| |||||||||||||||||||||||||||||| |
|
|
| T |
27462290 |
tgttgaaacttgtgtttcttgctaaaaaagtaaactttttttgatttggaatattgggttttgtttgttttttgtagaggcttaaaaggatgaaggatcg |
27462389 |
T |
|
| Q |
301 |
gtt |
303 |
Q |
| |
|
||| |
|
|
| T |
27462390 |
gtt |
27462392 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 222; E-Value: 1e-122
Query Start/End: Original strand, 1 - 303
Target Start/End: Complemental strand, 27521345 - 27521043
Alignment:
| Q |
1 |
cttagccgctgtgtctctgatccatgcacctcgccagatcaatccattccggtaaaagggctgtcaactgctttgcagcctctgcctccaatcaggagat |
100 |
Q |
| |
|
||||||||||||||||||||||| ||||||| ||| ||||||||||| ||||||||||||| |||||||||||||||||||| |||||| ||||| |||| |
|
|
| T |
27521345 |
cttagccgctgtgtctctgatccttgcaccttgccggatcaatccatgccggtaaaagggccgtcaactgctttgcagcctcagcctccgatcagcagat |
27521246 |
T |
|
| Q |
101 |
gtatatctgaagttattgatccttctgaggttaaagaagcagttgctcgttatttgaactctgctgaaaaaaccacccctgaatctgattcaatggtatg |
200 |
Q |
| |
|
|||||||||||||||||||||||| |||||||||||||||||| ||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
|
|
| T |
27521245 |
gtatatctgaagttattgatccttttgaggttaaagaagcagtagctcgttatttgaactctgctaaaaaaaccacccctgaatctgattcaatggtatg |
27521146 |
T |
|
| Q |
201 |
tgttgaaacttgtgtttcttgctaaaaaagtaatcnnnnnnngatttggaataatgggttttgtttgttatttgtagaggcttaaaaggatgaaggatcg |
300 |
Q |
| |
|
||||||||||||||||||||| |||||||||| || ||||||||||||||||||||||||||| || ||||||||||||||||||||||||||| |
|
|
| T |
27521145 |
tgttgaaacttgtgtttcttgataaaaaagtactctttttttgatttggaataatgggttttgtttgtttttcgtagaggcttaaaaggatgaaggatcg |
27521046 |
T |
|
| Q |
301 |
gtt |
303 |
Q |
| |
|
||| |
|
|
| T |
27521045 |
gtt |
27521043 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 219; E-Value: 1e-120
Query Start/End: Original strand, 1 - 303
Target Start/End: Original strand, 27482229 - 27482532
Alignment:
| Q |
1 |
cttagccgctgtgtctctgatccatgcacctcgccagatcaatccattccggtaaaagggctgtcaactgctttgcagcctctgcctccaatcaggagat |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||| || ||||||||||| || |||||||||| ||||||||||||||||||||||||||| ||||| |||| |
|
|
| T |
27482229 |
cttagccgctgtgtctctgatccatgcacctttccggatcaatccatgccagtaaaagggccgtcaactgctttgcagcctctgcctccgatcagcagat |
27482328 |
T |
|
| Q |
101 |
gtatatctgaagttattgatccttctgaggttaaagaagcagttgctcgttatttgaactctgctgaaaaaaccacccctgaatctgattcaatggtatg |
200 |
Q |
| |
|
|||||||||||||||| |||||| ||||||||||||||||||| |||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
27482329 |
gtatatctgaagttatcgatcctactgaggttaaagaagcagtagctcgttatttgaactgtgctgaaaaaaccacccctgaatctgattcaatggtatg |
27482428 |
T |
|
| Q |
201 |
tgttgaaacttgtgtttcttgctaaaaaagtaatc-nnnnnnngatttggaataatgggttttgtttgttatttgtagaggcttaaaaggatgaaggatc |
299 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
|
|
| T |
27482429 |
tgttgaaacttgtgtttcttgctaaaaaagtaatcttttttttaatttggaataatgggttttgtttgttttttgtagaggcttaaaaggatgaaggatc |
27482528 |
T |
|
| Q |
300 |
ggtt |
303 |
Q |
| |
|
|||| |
|
|
| T |
27482529 |
ggtt |
27482532 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 218; E-Value: 1e-119
Query Start/End: Original strand, 1 - 290
Target Start/End: Original strand, 18986190 - 18986480
Alignment:
| Q |
1 |
cttagccgctgtgtctctgatccatgcacctcgccagatcaatccattccggtaaaagggctgtcaactgctttgcagcctctgcctccaatcaggagat |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||| ||| ||||||||||| ||||||||||||| |||||||||||||||||||||||||||||||||||||| |
|
|
| T |
18986190 |
cttagccgctgtgtctctgatccatgcaccttgccggatcaatccatgccggtaaaagggccgtcaactgctttgcagcctctgcctccaatcaggagat |
18986289 |
T |
|
| Q |
101 |
gtatatctgaagttattgatccttctgaggttaaagaagcagttgctcgttatttgaactctgctgaaaaaaccacccctgaatctgattcaatggtatg |
200 |
Q |
| |
|
|||||||||||||||||||||| ||||| |||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
|
|
| T |
18986290 |
gtatatctgaagttattgatccgtctgatgttaaagaagcagttgatcgttatttgaactctgctgaaaaaaccacccttgaatctgattcaatggtatg |
18986389 |
T |
|
| Q |
201 |
tgttgaaacttgtgtttcttgctaaaaaagtaatc-nnnnnnngatttggaataatgggttttgtttgttatttgtagaggcttaaaagga |
290 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| || |||||||||||||||||||||||| |||||| ||||||||||||| |
|
|
| T |
18986390 |
tgttgaaacttgtgtttcttgctaaaaaagtaatcttttttttgacttggaataatgggttttgtttgttttttgtataggcttaaaagga |
18986480 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 186; E-Value: 1e-100
Query Start/End: Original strand, 618 - 823
Target Start/End: Original strand, 27463021 - 27463226
Alignment:
| Q |
618 |
ttcagattaatagtttttatgctgaacaattgatttttgtttttgtaggatgaattggaaaatgattatgaagaagctgttagtgtggagtgggttgata |
717 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
27463021 |
ttcagattaatagtttttatgctgaacaattgatttttgtttttgtaggatgaattgggaaatgattatgaagaagctgttagtgtggagtgggttgata |
27463120 |
T |
|
| Q |
718 |
agtgtttaagccttactttcaaatatccatgtggcaagggatatgaggttctaatctgtgcaaacaattgttactacaagctgatctagaagaatcagta |
817 |
Q |
| |
|
|||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |||||||||||||||| |
|
|
| T |
27463121 |
agtgtttaagccttactttcaagtgtccatgtggcaagggatatgaggttctaatctgtgcaaacaattgttactacaagttggtctagaagaatcagta |
27463220 |
T |
|
| Q |
818 |
tgctta |
823 |
Q |
| |
|
|||||| |
|
|
| T |
27463221 |
tgctta |
27463226 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 183; E-Value: 2e-98
Query Start/End: Original strand, 621 - 823
Target Start/End: Original strand, 27483396 - 27483598
Alignment:
| Q |
621 |
agattaatagtttttatgctgaacaattgatttttgtttttgtaggatgaattggaaaatgattatgaagaagctgttagtgtggagtgggttgataagt |
720 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
27483396 |
agattaatagtttttatgctgaacaattgatttttgtttttgtaggatgaattgggaaatgattatgaagaagctgttagtgtggagtgggttgataagt |
27483495 |
T |
|
| Q |
721 |
gtttaagccttactttcaaatatccatgtggcaagggatatgaggttctaatctgtgcaaacaattgttactacaagctgatctagaagaatcagtatgc |
820 |
Q |
| |
|
||||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||||||||||||||||| |
|
|
| T |
27483496 |
gtttaagccttactttcaagtgtccatgtggcaagggatatgaggttctaatctgtgcaaacaattgttactacaagttggtctagaagaatcagtatgc |
27483595 |
T |
|
| Q |
821 |
tta |
823 |
Q |
| |
|
||| |
|
|
| T |
27483596 |
tta |
27483598 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #7
Raw Score: 181; E-Value: 2e-97
Query Start/End: Original strand, 615 - 831
Target Start/End: Original strand, 18987740 - 18987956
Alignment:
| Q |
615 |
agtttcagattaatagtttttatgctgaacaattgatttttgtttttgtaggatgaattggaaaatgattatgaagaagctgttagtgtggagtgggttg |
714 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| |||||||||||||||||| |||||| |||||||||||||||||||||||||||||||||| ||| |
|
|
| T |
18987740 |
agtttcagattaatagtttttatgctgaacaattgttttttgtttttgtaggatcaattgggaaatgattatgaagaagctgttagtgtggagtggattg |
18987839 |
T |
|
| Q |
715 |
ataagtgtttaagccttactttcaaatatccatgtggcaagggatatgaggttctaatctgtgcaaacaattgttactacaagctgatctagaagaatca |
814 |
Q |
| |
|
||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||||||||||| |
|
|
| T |
18987840 |
ataagtgtttaagccttactttcaagtgtccatgtggcaagggatatgaggttctaatctgtgcaaacaattgttactacaagttggtctagaagaatca |
18987939 |
T |
|
| Q |
815 |
gtatgcttaattgattc |
831 |
Q |
| |
|
||||||||||| ||||| |
|
|
| T |
18987940 |
gtatgcttaatagattc |
18987956 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #8
Raw Score: 179; E-Value: 4e-96
Query Start/End: Original strand, 621 - 823
Target Start/End: Original strand, 27471623 - 27471825
Alignment:
| Q |
621 |
agattaatagtttttatgctgaacaattgatttttgtttttgtaggatgaattggaaaatgattatgaagaagctgttagtgtggagtgggttgataagt |
720 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
27471623 |
agattaatagtttttatgctgaacaattgatttttatttttgtaggatgaattgggaaatgattatgaagaagctgttagtgtggagtgggttgataagt |
27471722 |
T |
|
| Q |
721 |
gtttaagccttactttcaaatatccatgtggcaagggatatgaggttctaatctgtgcaaacaattgttactacaagctgatctagaagaatcagtatgc |
820 |
Q |
| |
|
||||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||||||||||||||||| |
|
|
| T |
27471723 |
gtttaagccttactttcaagtgtccatgtggcaagggatatgaggttctaatctgtgcaaacaattgttactacaagttggtctagaagaatcagtatgc |
27471822 |
T |
|
| Q |
821 |
tta |
823 |
Q |
| |
|
||| |
|
|
| T |
27471823 |
tta |
27471825 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #9
Raw Score: 179; E-Value: 4e-96
Query Start/End: Original strand, 617 - 823
Target Start/End: Complemental strand, 27520004 - 27519798
Alignment:
| Q |
617 |
tttcagattaatagtttttatgctgaacaattgatttttgtttttgtaggatgaattggaaaatgattatgaagaagctgttagtgtggagtgggttgat |
716 |
Q |
| |
|
||||||||||||||||||||||||||||| || |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
27520004 |
tttcagattaatagtttttatgctgaacagttcatttttgtttttgtaggatgaattgggaaatgattatgaagaagctgttagtgtggagtgggttgat |
27519905 |
T |
|
| Q |
717 |
aagtgtttaagccttactttcaaatatccatgtggcaagggatatgaggttctaatctgtgcaaacaattgttactacaagctgatctagaagaatcagt |
816 |
Q |
| |
|
||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||||||||||||| |
|
|
| T |
27519904 |
aagtgtttaagccttactttcaagtgtccatgtggcaagggatatgaggttctaatctgtgcaaacaattgttactacaagttggtctagaagaatcagt |
27519805 |
T |
|
| Q |
817 |
atgctta |
823 |
Q |
| |
|
||||||| |
|
|
| T |
27519804 |
atgctta |
27519798 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #10
Raw Score: 138; E-Value: 1e-71
Query Start/End: Original strand, 448 - 621
Target Start/End: Complemental strand, 27520553 - 27520380
Alignment:
| Q |
448 |
tttttcctttggtttttaatttacagaatctatgtaagaataaatactcttcctttcaagaattttgtgggcaatatgttagagttagaggctgcatatt |
547 |
Q |
| |
|
|||||||||||||||||||||||| ||||||| ||||||||||| ||||||| |||||||||||||||||||||||||||||||||||||| | |||| |
|
|
| T |
27520553 |
tttttcctttggtttttaatttaccgaatctaggtaagaataaacactcttcttttcaagaattttgtgggcaatatgttagagttagaggttttatatc |
27520454 |
T |
|
| Q |
548 |
gaagggtaaaaatgctaaattttaagacaagaacatactgaagaatgaagatgacatattcaattatagtttca |
621 |
Q |
| |
|
||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
27520453 |
gaagggtaaaaatgctaaattttaagacaggaacatactgaagaatgaagatgacatattcaattatagtttca |
27520380 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #11
Raw Score: 137; E-Value: 4e-71
Query Start/End: Original strand, 448 - 621
Target Start/End: Original strand, 18987200 - 18987369
Alignment:
| Q |
448 |
tttttcctttggtttttaatttacagaatctatgtaagaataaatactcttcctttcaagaattttgtgggcaatatgttagagttagaggctgcatatt |
547 |
Q |
| |
|
|||||||||||||||||||||||| ||||||| |||||||||||||||||||||||||||||||||||||| | |||||||||||||||||||||||||| |
|
|
| T |
18987200 |
tttttcctttggtttttaatttaccgaatctaggtaagaataaatactcttcctttcaagaattttgtgggaagtatgttagagttagaggctgcatatt |
18987299 |
T |
|
| Q |
548 |
gaagggtaaaaatgctaaattttaagacaagaacatactgaagaatgaagatgacatattcaattatagtttca |
621 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||| |
|
|
| T |
18987300 |
gaagggtaaaaatgctaaattttaagacaagaacatactgaa----gaagatgatatattcaattatagtttca |
18987369 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #12
Raw Score: 65; E-Value: 4e-28
Query Start/End: Original strand, 379 - 451
Target Start/End: Original strand, 18986615 - 18986687
Alignment:
| Q |
379 |
ctcttttgttgctgaagatgaaaaagtcatatctcaggtgcatgtcttgaatcttcaactgtgattgtctttt |
451 |
Q |
| |
|
||||||||||||| ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
|
|
| T |
18986615 |
ctcttttgttgctaaagatgaaaaagtcatatctcaggtacatgtcttgaatcttcaactgtgattgtctttt |
18986687 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #13
Raw Score: 65; E-Value: 4e-28
Query Start/End: Original strand, 379 - 451
Target Start/End: Complemental strand, 27520901 - 27520829
Alignment:
| Q |
379 |
ctcttttgttgctgaagatgaaaaagtcatatctcaggtgcatgtcttgaatcttcaactgtgattgtctttt |
451 |
Q |
| |
|
||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||| |
|
|
| T |
27520901 |
ctcttttgttgctgaagatgaaaaagtcatatcgcaggtacatgtcttgaatcttcaactgtgattgtctttt |
27520829 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #14
Raw Score: 64; E-Value: 2e-27
Query Start/End: Original strand, 448 - 527
Target Start/End: Original strand, 27471494 - 27471573
Alignment:
| Q |
448 |
tttttcctttggtttttaatttacagaatctatgtaagaataaatactcttcctttcaagaattttgtgggcaatatgtt |
527 |
Q |
| |
|
|||||| ||||||||||||||||| ||||||| ||||||||||||||||||||||||| ||||||||||||||||||||| |
|
|
| T |
27471494 |
tttttcgtttggtttttaatttactgaatctaggtaagaataaatactcttcctttcatgaattttgtgggcaatatgtt |
27471573 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #15
Raw Score: 53; E-Value: 6e-21
Query Start/End: Original strand, 379 - 451
Target Start/End: Original strand, 27482668 - 27482740
Alignment:
| Q |
379 |
ctcttttgttgctgaagatgaaaaagtcatatctcaggtgcatgtcttgaatcttcaactgtgattgtctttt |
451 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| ||| ||||||||||| ||| |||||||| |||| |
|
|
| T |
27482668 |
ctcttttgttgctgaagatgaaaaagtcatatctcaggtacatatcttgaatctttaacggtgattgtgtttt |
27482740 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #16
Raw Score: 51; E-Value: 9e-20
Query Start/End: Original strand, 379 - 445
Target Start/End: Original strand, 27462594 - 27462660
Alignment:
| Q |
379 |
ctcttttgttgctgaagatgaaaaagtcatatctcaggtgcatgtcttgaatcttcaactgtgattg |
445 |
Q |
| |
|
|||||||||| |||||||||||||||||||||||||||| ||| |||||||| |||||||||||||| |
|
|
| T |
27462594 |
ctcttttgtttctgaagatgaaaaagtcatatctcaggtacatatcttgaatattcaactgtgattg |
27462660 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #17
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 826 - 868
Target Start/End: Complemental strand, 27523510 - 27523468
Alignment:
| Q |
826 |
tgattcctgtatcatatttaaaccaaacatcattccaagaatt |
868 |
Q |
| |
|
||||||||||||||||||| |||||||| |||||||||||||| |
|
|
| T |
27523510 |
tgattcctgtatcatatttgaaccaaacttcattccaagaatt |
27523468 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #18
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 826 - 877
Target Start/End: Complemental strand, 27526219 - 27526168
Alignment:
| Q |
826 |
tgattcctgtatcatatttaaaccaaacatcattccaagaattatttagcca |
877 |
Q |
| |
|
|||||||||||||||| || |||||||| |||||||||||||| || ||||| |
|
|
| T |
27526219 |
tgattcctgtatcatacttgaaccaaacctcattccaagaattgttgagcca |
27526168 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #19
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 826 - 868
Target Start/End: Complemental strand, 27505809 - 27505767
Alignment:
| Q |
826 |
tgattcctgtatcatatttaaaccaaacatcattccaagaatt |
868 |
Q |
| |
|
|||||||||||||||| || |||||||| |||||||||||||| |
|
|
| T |
27505809 |
tgattcctgtatcatacttgaaccaaacctcattccaagaatt |
27505767 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #20
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 826 - 863
Target Start/End: Original strand, 27479934 - 27479971
Alignment:
| Q |
826 |
tgattcctgtatcatatttaaaccaaacatcattccaa |
863 |
Q |
| |
|
|||||||||||||||| || |||||||||||||||||| |
|
|
| T |
27479934 |
tgattcctgtatcatacttgaaccaaacatcattccaa |
27479971 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 196; Significance: 1e-106; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 196; E-Value: 1e-106
Query Start/End: Original strand, 8 - 303
Target Start/End: Original strand, 25518581 - 25518877
Alignment:
| Q |
8 |
gctgtgtctctgatccatgcacctcgccagatcaatccattccggtaaaagggctgtcaactgctttgcagcctctgcctccaatcaggagatgtatatc |
107 |
Q |
| |
|
|||||||| ||||||||||||||| ||| |||||| | || ||||| |||||| ||| |||||||||| |||||||||||| ||||||||||||||||| |
|
|
| T |
25518581 |
gctgtgtcgctgatccatgcaccttgccggatcaagctatgccggttaaagggtcgtcgactgctttgccgcctctgcctccgatcaggagatgtatatc |
25518680 |
T |
|
| Q |
108 |
tgaagttattgatccttctgaggttaaagaagcagttgctcgttatttgaactctgctgaaaaaaccacccctgaatctgattcaatggtatgtgttgaa |
207 |
Q |
| |
|
||||||||||||||||| ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
25518681 |
tgaagttattgatcctttggaggttaaagaagcagttgcttgttatttgaactctgctgaaaaaaccacccctgaatctgattcaatggtatgtgttgaa |
25518780 |
T |
|
| Q |
208 |
acttgtgtttcttgctaaaaaagtaatc-nnnnnnngatttggaataatgggttttgtttgttatttgtagaggcttaaaaggatgaaggatcggtt |
303 |
Q |
| |
|
|||||||||||||||||||||||||||| ||||||||| |||||||||||||||| ||||||||||||||||||||||||||||||||| |
|
|
| T |
25518781 |
acttgtgtttcttgctaaaaaagtaatctttttttatatttggaatcatgggttttgtttgttttttgtagaggcttaaaaggatgaaggatcggtt |
25518877 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 130; E-Value: 7e-67
Query Start/End: Original strand, 650 - 819
Target Start/End: Original strand, 25520054 - 25520223
Alignment:
| Q |
650 |
atttttgtttttgtaggatgaattggaaaatgattatgaagaagctgttagtgtggagtgggttgataagtgtttaagccttactttcaaatatccatgt |
749 |
Q |
| |
|
|||| ||||||||||||||||||||| ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| | ||||||| |
|
|
| T |
25520054 |
atttatgtttttgtaggatgaattgggaaatgattatgaagaagctgttagtgtagagtgggttgataagtgtttaagccttactttcaagtgtccatgt |
25520153 |
T |
|
| Q |
750 |
ggcaagggatatgaggttctaatctgtgcaaacaattgttactacaagctgatctagaagaatcagtatg |
819 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||| || | ||||||||||| |||| |
|
|
| T |
25520154 |
agcaagggatatgaggttctaatctgtgcaaacaattgttactacaagttggtgtagaagaatcactatg |
25520223 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 379 - 451
Target Start/End: Original strand, 25519019 - 25519091
Alignment:
| Q |
379 |
ctcttttgttgctgaagatgaaaaagtcatatctcaggtgcatgtcttgaatcttcaactgtgattgtctttt |
451 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| |||||||||||||| |||||||||||||||| |
|
|
| T |
25519019 |
ctcttttgttgctgaagatgaaaaagtcatatctcaggtatatgtcttgaatcttggactgtgattgtctttt |
25519091 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 51; Significance: 9e-20; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 51; E-Value: 9e-20
Query Start/End: Original strand, 681 - 807
Target Start/End: Complemental strand, 1700074 - 1699948
Alignment:
| Q |
681 |
gattatgaagaagctgttagtgtggagtgggttgataagtgtttaagccttactttcaaatatccatgtggcaagggatatgaggttctaatctgtgcaa |
780 |
Q |
| |
|
|||| |||||||||||| ||||| ||||||| ||| || || |||||||||||||||| | ||||||||||||||| ||||||||||| || | || | |
|
|
| T |
1700074 |
gattttgaagaagctgtgagtgtagagtgggctgaaaaatgcataagccttactttcaagtgtccatgtggcaagggctatgaggttcttatatcagcca |
1699975 |
T |
|
| Q |
781 |
acaattgttactacaagctgatctaga |
807 |
Q |
| |
|
|||||||||| |||||| || |||||| |
|
|
| T |
1699974 |
acaattgttattacaagttggtctaga |
1699948 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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