View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20655_low_10 (Length: 389)
Name: NF20655_low_10
Description: NF20655
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20655_low_10 |
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Alignment Details
Target: chr5 (Bit Score: 289; Significance: 1e-162; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 289; E-Value: 1e-162
Query Start/End: Original strand, 20 - 374
Target Start/End: Complemental strand, 3523114 - 3522764
Alignment:
| Q |
20 |
cggttctcaaatcagaaggttcatgacttcatcttccatcgactataagacaagaggtcttcatgtatttttctaaacctttctcttatgtcaactgaga |
119 |
Q |
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| T |
3523114 |
cggttctcaaatcagaaggttcatgacttcatctttcatcgactataagacaagaggtcttcatgtatttttctaaacctttctcttatgtcaactgaga |
3523015 |
T |
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| Q |
120 |
aatacctacttttgacatagtaatctttgcttctttgaatgaggttcaaaatactcttctttcnnnnnnntcttggacgaggaaatcttcaaggtagtcc |
219 |
Q |
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|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| ||||||| ||||||||| |||||||||||| |
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| T |
3523014 |
aatacctacttttgacatagtagtctttgcttctttgaatgaggttcaaaatactcttctttcaaaaaaatcttggaggaggaaatcatcaaggtagtcc |
3522915 |
T |
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| Q |
220 |
atatataattccaaaggaaacaaaagttcaggcccgaatggtttcaactgtgaattttttaagcctcttttgaggtctcctcaaggtggaaagtgttggt |
319 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
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| T |
3522914 |
----ataattccaaaggaaacaaaagttcaggcccgaatggtttcaactgtgaattttttaagccttttttgaggtctcctcaaggtggaaagtgttggt |
3522819 |
T |
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| Q |
320 |
aatgttcgaccaattcaatcaaaatgaatgtcttccaaactatttttccttctat |
374 |
Q |
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|||||| || ||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3522818 |
aatgttggatcaattcaatcaaaatgaatgtcttccaaactatttttccttctat |
3522764 |
T |
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