View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20655_low_12 (Length: 358)

Name: NF20655_low_12
Description: NF20655
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20655_low_12
NF20655_low_12
[»] chr2 (4 HSPs)
chr2 (5-348)||(3716720-3717063)
chr2 (38-127)||(7629740-7629829)
chr2 (37-95)||(44439160-44439218)
chr2 (41-110)||(33047673-33047742)
[»] chr4 (8 HSPs)
chr4 (28-83)||(49138943-49138998)
chr4 (41-112)||(43075956-43076027)
chr4 (37-83)||(16551879-16551925)
chr4 (35-80)||(21691335-21691380)
chr4 (37-96)||(1099745-1099804)
chr4 (49-112)||(33843584-33843647)
chr4 (28-83)||(46344939-46344994)
chr4 (33-85)||(29114695-29114747)
[»] scaffold0168 (1 HSPs)
scaffold0168 (35-83)||(31748-31796)
[»] chr3 (7 HSPs)
chr3 (37-112)||(7262791-7262866)
chr3 (38-96)||(3776448-3776506)
chr3 (37-117)||(52925728-52925808)
chr3 (28-83)||(54596740-54596795)
chr3 (46-112)||(40339078-40339144)
chr3 (33-83)||(50321871-50321921)
chr3 (35-83)||(21356789-21356837)
[»] chr1 (5 HSPs)
chr1 (37-112)||(15478118-15478193)
chr1 (41-117)||(36529393-36529469)
chr1 (33-66)||(28084001-28084034)
chr1 (38-111)||(35681824-35681897)
chr1 (40-87)||(3808805-3808850)
[»] chr8 (7 HSPs)
chr8 (35-80)||(13384769-13384814)
chr8 (27-83)||(3120510-3120566)
chr8 (35-111)||(11038076-11038152)
chr8 (37-85)||(41318896-41318944)
chr8 (38-112)||(4554399-4554473)
chr8 (62-112)||(35775149-35775199)
chr8 (38-110)||(39648263-39648335)
[»] chr5 (4 HSPs)
chr5 (35-96)||(29922803-29922864)
chr5 (33-83)||(6949604-6949654)
chr5 (33-71)||(14299264-14299302)
chr5 (37-81)||(39097188-39097232)
[»] scaffold0314 (1 HSPs)
scaffold0314 (38-83)||(17348-17393)
[»] chr7 (2 HSPs)
chr7 (38-83)||(45004907-45004952)
chr7 (46-82)||(29842031-29842067)


Alignment Details
Target: chr2 (Bit Score: 324; Significance: 0; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 324; E-Value: 0
Query Start/End: Original strand, 5 - 348
Target Start/End: Original strand, 3716720 - 3717063
Alignment:
Q  5 ttcaagctagaatcaattagtcaactttaaaacaaccaaatatgtcagaattaattctacacctctaaaatcaattttgtctcctcaaaaagctaaacca 104  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| ||||||||||||||||||    
T  3716720 ttcaagctagaatcaattagtcaactttaaaacaaccaaatatgtcagaattaattctatacctctaaaatcaattttgtcccctcaaaaagctaaacca 3716819  T
Q  105 aacatacattaaaacttagagaagattgatgactccacatacaacacttattccatgaaaggaaatatttttcatgtaagtatttatacccgttaatcca 204  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||    
T  3716820 aacatacattaaaacttagagaagattgatgactccacatacaacacttattccatgaaaggaaatatttttcatgtaagtatttattcccgttaatcca 3716919  T
Q  205 taaaaacaaattcaacagaagagcacataaaagactaattggatgataaaaaccaatagaattgagagagagaaaacactttttattgtggttggtccag 304  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||     
T  3716920 taaaaacaaattcaacagaagagcacataaaagactaattggatgataaaaaccaatagaattgagagagagaaaacactttttattgtggttggtccat 3717019  T
Q  305 atgactatgacaccttaagctagtcgtcaaatgtttgatctctg 348  Q
    |||| |||||||||||||||||||||||||||||||||||||||    
T  3717020 atgattatgacaccttaagctagtcgtcaaatgtttgatctctg 3717063  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 38 - 127
Target Start/End: Complemental strand, 7629829 - 7629740
Alignment:
Q  38 aaccaaatatgtcagaattaattctacacctctaaaatcaattttgtctcctcaaaaagctaaaccaaacatacattaaaacttagagaa 127  Q
    ||||||| ||| || ||| ||||||||||||||| ||||||| ||| |||||| |||||   ||||||||||||| ||||| | ||||||    
T  7629829 aaccaaacatgacaaaatcaattctacacctctagaatcaatcttggctcctccaaaagtggaaccaaacatacactaaaaatgagagaa 7629740  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 37 - 95
Target Start/End: Complemental strand, 44439218 - 44439160
Alignment:
Q  37 caaccaaatatgtcagaattaattctacacctctaaaatcaattttgtctcctcaaaaa 95  Q
    |||||||| |||||| ||||||||| |||||| || ||||||||||| |||||| ||||    
T  44439218 caaccaaacatgtcaaaattaattcaacacctttagaatcaattttggctcctctaaaa 44439160  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 41 - 110
Target Start/End: Original strand, 33047673 - 33047742
Alignment:
Q  41 caaatatgtcagaattaattctacacctctaaaatcaattttgtctcctcaaaaagctaaaccaaacata 110  Q
    |||| |||| ||||| ||||||||||||| |||||||||||||   |||| | |||| ||||||||||||    
T  33047673 caaacatgtgagaatcaattctacacctccaaaatcaattttggtccctctagaagcgaaaccaaacata 33047742  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 8)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 28 - 83
Target Start/End: Original strand, 49138943 - 49138998
Alignment:
Q  28 actttaaaacaaccaaatatgtcagaattaattctacacctctaaaatcaattttg 83  Q
    |||| |||||||||||| |||||||||| ||||||||||||||| |||||||||||    
T  49138943 acttgaaaacaaccaaacatgtcagaatcaattctacacctctagaatcaattttg 49138998  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 41 - 112
Target Start/End: Complemental strand, 43076027 - 43075956
Alignment:
Q  41 caaatatgtcagaattaattctacacctctaaaatcaattttgtctcctcaaaaagctaaaccaaacataca 112  Q
    ||||||||| | ||| |||||| |||||||| ||||||||||| |||||| ||||||  |||||||||||||    
T  43076027 caaatatgttaaaatcaattctgcacctctagaatcaattttgcctcctccaaaagcagaaccaaacataca 43075956  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 37 - 83
Target Start/End: Complemental strand, 16551925 - 16551879
Alignment:
Q  37 caaccaaatatgtcagaattaattctacacctctaaaatcaattttg 83  Q
    |||||| | |||||||||| |||||||||||||||||||||||||||    
T  16551925 caaccatacatgtcagaatcaattctacacctctaaaatcaattttg 16551879  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 35 - 80
Target Start/End: Original strand, 21691335 - 21691380
Alignment:
Q  35 aacaaccaaatatgtcagaattaattctacacctctaaaatcaatt 80  Q
    ||||||||||||||||||||| ||||||||||||| | ||||||||    
T  21691335 aacaaccaaatatgtcagaatcaattctacacctccagaatcaatt 21691380  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 37 - 96
Target Start/End: Complemental strand, 1099804 - 1099745
Alignment:
Q  37 caaccaaatatgtcagaattaattctacacctctaaaatcaattttgtctcctcaaaaag 96  Q
    ||||||||||| ||| ||| |||||| || ||||| |||||||||||||||||| |||||    
T  1099804 caaccaaatatttcaaaatcaattctgcatctctagaatcaattttgtctcctccaaaag 1099745  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 49 - 112
Target Start/End: Complemental strand, 33843647 - 33843584
Alignment:
Q  49 tcagaattaattctacacctctaaaatcaattttgtctcctcaaaaagctaaaccaaacataca 112  Q
    ||||||||||||||||||||||| |||||||||||   |||| | |||  ||||||||||||||    
T  33843647 tcagaattaattctacacctctagaatcaattttggaccctctagaagtgaaaccaaacataca 33843584  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 28 - 83
Target Start/End: Original strand, 46344939 - 46344994
Alignment:
Q  28 actttaaaacaaccaaatatgtcagaattaattctacacctctaaaatcaattttg 83  Q
    |||| ||| |||||||| ||||||||||||||| |||||||| | |||||||||||    
T  46344939 acttgaaagcaaccaaacatgtcagaattaattatacacctccataatcaattttg 46344994  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 33 - 85
Target Start/End: Complemental strand, 29114747 - 29114695
Alignment:
Q  33 aaaacaaccaaatatgtcagaattaattctacacctctaaaatcaattttgtc 85  Q
    ||||||||| || |||| ||||| |||||||||| |||| |||||||||||||    
T  29114747 aaaacaacctaacatgttagaatcaattctacacttctagaatcaattttgtc 29114695  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0168 (Bit Score: 37; Significance: 0.000000000008; HSPs: 1)
Name: scaffold0168
Description:

Target: scaffold0168; HSP #1
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 35 - 83
Target Start/End: Complemental strand, 31796 - 31748
Alignment:
Q  35 aacaaccaaatatgtcagaattaattctacacctctaaaatcaattttg 83  Q
    |||||||||| |||||||||| ||||||||||||||| |||||||||||    
T  31796 aacaaccaaacatgtcagaatcaattctacacctctagaatcaattttg 31748  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 36; Significance: 0.00000000003; HSPs: 7)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 37 - 112
Target Start/End: Complemental strand, 7262866 - 7262791
Alignment:
Q  37 caaccaaatatgtcagaattaattctacacctctaaaatcaattttgtctcctcaaaaagctaaaccaaacataca 112  Q
    |||||||| |||||||||| |||||| |||||||||||||||||||| | | || || ||  ||||||||||||||    
T  7262866 caaccaaacatgtcagaatcaattcttcacctctaaaatcaattttggcccatctaatagtgaaaccaaacataca 7262791  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 38 - 96
Target Start/End: Complemental strand, 3776506 - 3776448
Alignment:
Q  38 aaccaaatatgtcagaattaattctacacctctaaaatcaattttgtctcctcaaaaag 96  Q
    ||||||| |||||| ||| ||||||||||||||| || ||||||||||||||| |||||    
T  3776506 aaccaaacatgtcaaaatcaattctacacctctataaccaattttgtctcctccaaaag 3776448  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 37 - 117
Target Start/End: Original strand, 52925728 - 52925808
Alignment:
Q  37 caaccaaatatgtcagaattaattctacacctctaaaatcaattttgtctcctcaaaaagctaaaccaaacatacattaaa 117  Q
    |||||||| |||||| ||| |||| |||||||||| ||||||||||| |||||| |||||   |||| |||||||| ||||    
T  52925728 caaccaaacatgtcaaaatcaattatacacctctagaatcaattttgactcctccaaaagtggaaccgaacatacactaaa 52925808  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 28 - 83
Target Start/End: Complemental strand, 54596795 - 54596740
Alignment:
Q  28 actttaaaacaaccaaatatgtcagaattaattctacacctctaaaatcaattttg 83  Q
    |||| |||||||||||| |||||| ||| |||| |||||||||||||| |||||||    
T  54596795 acttgaaaacaaccaaacatgtcataatcaattttacacctctaaaattaattttg 54596740  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 46 - 112
Target Start/End: Complemental strand, 40339144 - 40339078
Alignment:
Q  46 atgtcagaattaattctacacctctaaaatcaattttgtctcctcaaaaagctaaaccaaacataca 112  Q
    |||||| ||| |||| ||| |||||||||||||||||| | | || ||||| |||||||||||||||    
T  40339144 atgtcaaaatcaattatactcctctaaaatcaattttggcccttccaaaagttaaaccaaacataca 40339078  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 33 - 83
Target Start/End: Original strand, 50321871 - 50321921
Alignment:
Q  33 aaaacaaccaaatatgtcagaattaattctacacctctaaaatcaattttg 83  Q
    |||||||||||| ||||||||||||||||||||  ||  ||||||||||||    
T  50321871 aaaacaaccaaacatgtcagaattaattctacatatccgaaatcaattttg 50321921  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 35 - 83
Target Start/End: Complemental strand, 21356837 - 21356789
Alignment:
Q  35 aacaaccaaatatgtcagaattaattctacacctctaaaatcaattttg 83  Q
    ||||||||||||||||| |||||||| ||||  |||| |||||||||||    
T  21356837 aacaaccaaatatgtcaaaattaattttacatttctataatcaattttg 21356789  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 36; Significance: 0.00000000003; HSPs: 5)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 37 - 112
Target Start/End: Original strand, 15478118 - 15478193
Alignment:
Q  37 caaccaaatatgtcagaattaattctacacctctaaaatcaattttgtctcctcaaaaagctaaaccaaacataca 112  Q
    |||||||| |||||| ||| ||||||||||| |||||||||| |||| |||||| |||||   |||||||||||||    
T  15478118 caaccaaacatgtcaaaatcaattctacaccgctaaaatcaagtttggctcctccaaaagtggaaccaaacataca 15478193  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 41 - 117
Target Start/End: Complemental strand, 36529469 - 36529393
Alignment:
Q  41 caaatatgtcagaattaattctacacctctaaaatcaattttgtctcctcaaaaagctaaaccaaacatacattaaa 117  Q
    |||| |||||| |||||||||||||  |||||||| ||||||| | |||| |||||  ||| |||||||||||||||    
T  36529469 caaacatgtcaaaattaattctacatttctaaaattaattttggcacctctaaaagtgaaatcaaacatacattaaa 36529393  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 33 - 66
Target Start/End: Original strand, 28084001 - 28084034
Alignment:
Q  33 aaaacaaccaaatatgtcagaattaattctacac 66  Q
    ||||||||||||||||||||||| ||||||||||    
T  28084001 aaaacaaccaaatatgtcagaatcaattctacac 28084034  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 38 - 111
Target Start/End: Complemental strand, 35681897 - 35681824
Alignment:
Q  38 aaccaaatatgtcagaattaattctacacctctaaaatcaattttgtctcctcaaaaagctaaaccaaacatac 111  Q
    ||||||| |||||||||| |||  ||||| ||||||||||| |||| | |||| |||||  |||||||||||||    
T  35681897 aaccaaacatgtcagaatcaatgttacacatctaaaatcaactttgacccctctaaaagtgaaaccaaacatac 35681824  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 40 - 87
Target Start/End: Original strand, 3808805 - 3808850
Alignment:
Q  40 ccaaatatgtcagaattaattctacacctctaaaatcaattttgtctc 87  Q
    ||||||||||||  ||||||| || |||||||||||||||||||||||    
T  3808805 ccaaatatgtca--attaattatatacctctaaaatcaattttgtctc 3808850  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 34; Significance: 0.0000000005; HSPs: 7)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 35 - 80
Target Start/End: Original strand, 13384769 - 13384814
Alignment:
Q  35 aacaaccaaatatgtcagaattaattctacacctctaaaatcaatt 80  Q
    |||||||||| |||||||||| ||||||||||||| ||||||||||    
T  13384769 aacaaccaaacatgtcagaatcaattctacacctccaaaatcaatt 13384814  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 27 - 83
Target Start/End: Original strand, 3120510 - 3120566
Alignment:
Q  27 aactttaaaacaaccaaatatgtcagaattaattctacacctctaaaatcaattttg 83  Q
    ||||| ||| |||||||| || | |||| ||||||||||||||||||||||||||||    
T  3120510 aacttaaaagcaaccaaacatattagaactaattctacacctctaaaatcaattttg 3120566  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 35 - 111
Target Start/End: Complemental strand, 11038152 - 11038076
Alignment:
Q  35 aacaaccaaatatgtcagaattaattctacacctctaaaatcaattttgtctcctcaaaaagctaaaccaaacatac 111  Q
    |||| ||||| |||||| ||| |||| || ||||||| ||||||||||||||| |||||||| |||| |||| ||||    
T  11038152 aacatccaaacatgtcaaaatcaattatatacctctagaatcaattttgtctcgtcaaaaagttaaaacaaatatac 11038076  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 37 - 85
Target Start/End: Original strand, 41318896 - 41318944
Alignment:
Q  37 caaccaaatatgtcagaattaattctacacctctaaaatcaattttgtc 85  Q
    ||||||||||||| |||||||||||| |||||  |||||||||||||||    
T  41318896 caaccaaatatgttagaattaattctccaccttcaaaatcaattttgtc 41318944  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 38 - 112
Target Start/End: Complemental strand, 4554473 - 4554399
Alignment:
Q  38 aaccaaatatgtcagaattaattctacacctctaaaatcaattttgtctcctcaaaaagctaaaccaaacataca 112  Q
    |||||||| ||||| ||| |||||||||| |||| ||||||||| | |||||| |||||  | ||||||||||||    
T  4554473 aaccaaatctgtcaaaatgaattctacacttctagaatcaatttgggctcctccaaaagtgataccaaacataca 4554399  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 62 - 112
Target Start/End: Complemental strand, 35775199 - 35775149
Alignment:
Q  62 tacacctctaaaatcaattttgtctcctcaaaaagctaaaccaaacataca 112  Q
    ||||||||||||||||||||| ||||||| |||||  ||||||| ||||||    
T  35775199 tacacctctaaaatcaattttatctcctccaaaagtgaaaccaagcataca 35775149  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 38 - 110
Target Start/End: Original strand, 39648263 - 39648335
Alignment:
Q  38 aaccaaatatgtcagaattaattctacacctctaaaatcaattttgtctcctcaaaaagctaaaccaaacata 110  Q
    ||||||| |||||| ||| |||| |||| ||||| ||||||||||| |||||| |||||   |||||||||||    
T  39648263 aaccaaacatgtcaaaatcaattatacatctctagaatcaattttgactcctctaaaagtgtaaccaaacata 39648335  T

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Target: chr5 (Bit Score: 34; Significance: 0.0000000005; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 35 - 96
Target Start/End: Complemental strand, 29922864 - 29922803
Alignment:
Q  35 aacaaccaaatatgtcagaattaattctacacctctaaaatcaattttgtctcctcaaaaag 96  Q
    |||||||||| |||||| ||| ||||||||||  ||| ||||||||||| ||||||||||||    
T  29922864 aacaaccaaacatgtcaaaatcaattctacactactagaatcaattttgactcctcaaaaag 29922803  T

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Target: chr5; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 33 - 83
Target Start/End: Complemental strand, 6949654 - 6949604
Alignment:
Q  33 aaaacaaccaaatatgtcagaattaattctacacctctaaaatcaattttg 83  Q
    ||||||||||||  ||||||||||||||||||  ||| |||||||||||||    
T  6949654 aaaacaaccaaagttgtcagaattaattctactactccaaaatcaattttg 6949604  T

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Target: chr5; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 33 - 71
Target Start/End: Complemental strand, 14299302 - 14299264
Alignment:
Q  33 aaaacaaccaaatatgtcagaattaattctacacctcta 71  Q
    |||||||||||||||| |||||| |||||||||||||||    
T  14299302 aaaacaaccaaatatgccagaatcaattctacacctcta 14299264  T

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Target: chr5; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 37 - 81
Target Start/End: Complemental strand, 39097232 - 39097188
Alignment:
Q  37 caaccaaatatgtcagaattaattctacacctctaaaatcaattt 81  Q
    |||||||| |||||| ||| ||||||||||||||| |||||||||    
T  39097232 caaccaaacatgtcaaaatcaattctacacctctataatcaattt 39097188  T

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Target: scaffold0314 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold0314
Description:

Target: scaffold0314; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 38 - 83
Target Start/End: Complemental strand, 17393 - 17348
Alignment:
Q  38 aaccaaatatgtcagaattaattctacacctctaaaatcaattttg 83  Q
    |||||||||||||| ||| ||||||||||||| | |||||||||||    
T  17393 aaccaaatatgtcataatcaattctacacctccagaatcaattttg 17348  T

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Target: chr7 (Bit Score: 30; Significance: 0.0000001; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 38 - 83
Target Start/End: Complemental strand, 45004952 - 45004907
Alignment:
Q  38 aaccaaatatgtcagaattaattctacacctctaaaatcaattttg 83  Q
    ||||||| |||||| ||| ||||||||||||||| |||||||||||    
T  45004952 aaccaaacatgtcaaaatcaattctacacctctagaatcaattttg 45004907  T

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Target: chr7; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 46 - 82
Target Start/End: Complemental strand, 29842067 - 29842031
Alignment:
Q  46 atgtcagaattaattctacacctctaaaatcaatttt 82  Q
    ||||||||||| |||||||||||||| ||||||||||    
T  29842067 atgtcagaattgattctacacctctagaatcaatttt 29842031  T

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