View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20655_low_15 (Length: 286)
Name: NF20655_low_15
Description: NF20655
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20655_low_15 |
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Alignment Details
Target: chr1 (Bit Score: 101; Significance: 4e-50; HSPs: 5)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 101; E-Value: 4e-50
Query Start/End: Original strand, 112 - 212
Target Start/End: Original strand, 12175694 - 12175794
Alignment:
| Q |
112 |
aggtaaagaaaatgggatagacgaaagcaagtatggctattatggaggttggggttacggcggtccatggcgtggaggttggggttatggcggtccatgg |
211 |
Q |
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| T |
12175694 |
aggtaaagaaaatgggatagacgaaagcaagtatggctattatggaggttggggttacggcggtccatggcgtggaggttggggttatggcggtccatgg |
12175793 |
T |
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| Q |
212 |
c |
212 |
Q |
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| T |
12175794 |
c |
12175794 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 110 - 212
Target Start/End: Original strand, 12183197 - 12183299
Alignment:
| Q |
110 |
gtaggtaaagaaaatgggatagacgaaagcaagtatggctattatggaggttggggttacggcggtccatggcgtggaggttggggttatggcggtccat |
209 |
Q |
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| T |
12183197 |
gtagataaagcaaatggggtcgatgaaagcaaatatgactatgatggaggtttgggttacggtggtccatggcgtggaggttggggttacggtgatccat |
12183296 |
T |
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| Q |
210 |
ggc |
212 |
Q |
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||| |
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| T |
12183297 |
ggc |
12183299 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 115 - 212
Target Start/End: Original strand, 12188930 - 12189030
Alignment:
| Q |
115 |
taaagaaaatgggatagacgaaagcaagtatggctattatggaggttggggttacggcggtccatggcgtgg------aggttggggttatggcggtcca |
208 |
Q |
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| T |
12188930 |
taaagcaaatggggtagatgaaagcaaatatggctat---ggaggttggggttacggtggtccttggcgtggcggctatggttggggttacggcggtcca |
12189026 |
T |
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| Q |
209 |
tggc |
212 |
Q |
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|||| |
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| T |
12189027 |
tggc |
12189030 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 154 - 189
Target Start/End: Original strand, 12175766 - 12175801
Alignment:
| Q |
154 |
tggaggttggggttacggcggtccatggcgtggagg |
189 |
Q |
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| T |
12175766 |
tggaggttggggttatggcggtccatggcgtggagg |
12175801 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 158 - 186
Target Start/End: Original strand, 12189006 - 12189034
Alignment:
| Q |
158 |
ggttggggttacggcggtccatggcgtgg |
186 |
Q |
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| T |
12189006 |
ggttggggttacggcggtccatggcgtgg |
12189034 |
T |
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