View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20655_low_17 (Length: 246)
Name: NF20655_low_17
Description: NF20655
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20655_low_17 |
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Alignment Details
Target: chr4 (Bit Score: 190; Significance: 1e-103; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 190; E-Value: 1e-103
Query Start/End: Original strand, 9 - 230
Target Start/End: Complemental strand, 11142867 - 11142643
Alignment:
| Q |
9 |
aatgtgatttgtgtttaccaagttcagtaaaatttctgccaatctttcaagttcttgcattgcatcatatgatttgatgtacaaaaattctcacattaat |
108 |
Q |
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| T |
11142867 |
aatgtgatttgtgtttaccaagttcagtaaaatttctgccaatctttcaagttcttgcaatgcatcatatgatttgatgtagaaaaattctcacattaat |
11142768 |
T |
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| Q |
109 |
gcatttcc--agagtctaaaag-caaaaaatagtaggcataaataaagtacactgctcaataaagtattcaacgctgttccttactctgagtagtgtatt |
205 |
Q |
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|||||||| |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |||| |
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| T |
11142767 |
gcatttccagagagtctaaaagacaaaaaatagtaggcataaataaagtacactgctcaataaagtattcaacgttgttccttactctgagtagtatatt |
11142668 |
T |
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| Q |
206 |
tcatgtagaaacgacaggccatcca |
230 |
Q |
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||||||||||||||||||||||||| |
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| T |
11142667 |
tcatgtagaaacgacaggccatcca |
11142643 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 56; Significance: 3e-23; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 9 - 115
Target Start/End: Original strand, 46709747 - 46709854
Alignment:
| Q |
9 |
aatgtgatttgtgttt-accaagttcagtaaaatttctgccaatctttcaagttcttgcattgcatcatatgatttgatgtacaaaaattctcacattaa |
107 |
Q |
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| T |
46709747 |
aatgtgattcgtgttttaccaagttcagtaaactttctgccaatcttccaagttattgcatcacatcgtatcatttgaaatacaaaaattctcacattaa |
46709846 |
T |
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| Q |
108 |
tgcatttc |
115 |
Q |
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|| ||||| |
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| T |
46709847 |
tgtatttc |
46709854 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 182 - 230
Target Start/End: Original strand, 46709908 - 46709956
Alignment:
| Q |
182 |
gttccttactctgagtagtgtatttcatgtagaaacgacaggccatcca |
230 |
Q |
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| T |
46709908 |
gttccttactctgagtaatatatctcatgtagaaacaacaggccatcca |
46709956 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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