View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20655_low_3 (Length: 556)
Name: NF20655_low_3
Description: NF20655
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20655_low_3 |
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Alignment Details
Target: chr2 (Bit Score: 362; Significance: 0; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 362; E-Value: 0
Query Start/End: Original strand, 154 - 539
Target Start/End: Original strand, 15790239 - 15790624
Alignment:
| Q |
154 |
agtggaagaaaccgtccaactgaactcttaaatgtccacgagcttacacgtcgaattgaaaaagtgttgcgactaccagcacaataacggtcaccctaga |
253 |
Q |
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| T |
15790239 |
agtggaagaaaccgtccaactgaactcttaaatgtccacgagcttacacgtcgaatttaaaaagtgttgcgacttccagcacaataacggtcaccctaga |
15790338 |
T |
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| Q |
254 |
gttacagttatccccagtccacatgtgaaaatacagttatcaagaaatttcatcaaataatttcaaatgattatacattaaaattaagggtattttcgta |
353 |
Q |
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| T |
15790339 |
gttacagttatcaccagtccacatgtgaaaatacagttatcaagaaatttcatcaaataatttcaaatgattatatattaaaattaagggtattttcgta |
15790438 |
T |
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| Q |
354 |
taaaagaggtgtaactgaacattcgcctaatgtaacaagaacaaatcatgttcttatgtttatttttaatcaatctggaccctcaccgaagtcatcatga |
453 |
Q |
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| T |
15790439 |
taaaagaggtgtaattgaacattcgcctaatgtaacaagaacaaatcatgttcttatgtttatttttcatcaatctggaccctcaccgaagtcatcatga |
15790538 |
T |
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| Q |
454 |
aattattatactagtacataatattttcaacaaaaaattgcactaaatccaaataacaattttcatgacctaagatccaaacgaac |
539 |
Q |
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| T |
15790539 |
aattattatactagtacataatattttcaacaaaaaattgcactaaatccaaataacaattttcatgacctaagatccaaacgaac |
15790624 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 1 - 70
Target Start/End: Complemental strand, 15789712 - 15789643
Alignment:
| Q |
1 |
accatggaattcttgtagcacaagtttttgttttctcaatacaactatgatacgttttagagcatgtttg |
70 |
Q |
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| T |
15789712 |
accatggaattcttgtagcacaagtttttgttttctcaatacaactatgatacattttagcgcatgtttg |
15789643 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 56; E-Value: 6e-23
Query Start/End: Original strand, 67 - 155
Target Start/End: Original strand, 15789790 - 15789892
Alignment:
| Q |
67 |
tttggattcctgtcatttaattccaaaacaaattaaccttaac--------------caactggttggttaatgcgatccaccaaaggacgaatcattcg |
152 |
Q |
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| T |
15789790 |
tttggattcctgtcatttaattccaaaacaaattaaccttaaccaagtggttgggctcaactggttggttaatgcgatccaccaaaggacgaatcattcg |
15789889 |
T |
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| Q |
153 |
cag |
155 |
Q |
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| T |
15789890 |
cag |
15789892 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 69; Significance: 1e-30; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 69; E-Value: 1e-30
Query Start/End: Original strand, 398 - 529
Target Start/End: Complemental strand, 26757970 - 26757833
Alignment:
| Q |
398 |
atcatgttcttatgtttatttttaatcaatctggaccctcaccgaagtcatcatgaaattattatacta-gta--cataatatttt---caacaaaaaat |
491 |
Q |
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| T |
26757970 |
atcatgttcttatgtttatttttaatcaatctggaccctcactgaagtcatcatgaaattcttatactacgtaatcaaaaaattatggaaaataaaaaat |
26757871 |
T |
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| Q |
492 |
tgcactaaatccaaataacaattttcatgacctaagat |
529 |
Q |
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| T |
26757870 |
tgcactaaatccaaataacaattttcatagcctaagat |
26757833 |
T |
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