View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20655_low_4 (Length: 520)

Name: NF20655_low_4
Description: NF20655
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20655_low_4
NF20655_low_4
[»] chr2 (4 HSPs)
chr2 (89-400)||(3716313-3716624)
chr2 (19-93)||(3716189-3716262)
chr2 (454-508)||(3716678-3716732)
chr2 (340-396)||(10618869-10618925)
[»] chr6 (1 HSPs)
chr6 (331-392)||(9505884-9505945)
[»] chr4 (1 HSPs)
chr4 (331-399)||(48575491-48575559)
[»] chr7 (2 HSPs)
chr7 (340-399)||(597862-597921)
chr7 (340-396)||(40491688-40491744)
[»] chr5 (2 HSPs)
chr5 (341-400)||(35138943-35139002)
chr5 (340-396)||(14299436-14299492)
[»] chr3 (1 HSPs)
chr3 (339-396)||(584711-584768)


Alignment Details
Target: chr2 (Bit Score: 300; Significance: 1e-168; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 300; E-Value: 1e-168
Query Start/End: Original strand, 89 - 400
Target Start/End: Original strand, 3716313 - 3716624
Alignment:
Q  89 agtcaaatcactcaaatataacctcaagttcatcgcattctcaaactttaatagtaaatcggataagtacaaacataatatactattcaagtgctatata 188  Q
    |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||    
T  3716313 agtcaaatcactcaaatataacctcaagttcatcacattctcaaactttaatagtaaatcggataagtacaaacataatatattattcaagtgctatata 3716412  T
Q  189 ttctacttatatgtggtggaaagctggaaagaagtgggagtagctgttgcaacaacaaattctttaatcataatcataacctaaacaaagtggaagaatg 288  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  3716413 ttctacttatatgtggtggaaagctggaaagaagtgggagtagctgttgcaacaacaaattctttaatcataatcataacctaaacaaagtggaagaatg 3716512  T
Q  289 tgctttaaagtatgttcaatgtgtgttttgttgttcactcataaaaattagttttgagtgaattgattatctaaagtttattttagctaaaaatgagttg 388  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||    
T  3716513 tgctttaaagtatgttcaatgtgtgttttgttgttcactcataaaaattagttttgagtgaattgattatctaaagtttattttagttaaaaatgagttg 3716612  T
Q  389 aaggtaaaatga 400  Q
    ||||||||||||    
T  3716613 aaggtaaaatga 3716624  T

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Target: chr2; HSP #2
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 19 - 93
Target Start/End: Original strand, 3716189 - 3716262
Alignment:
Q  19 aggggtgcctgttataaaagagtctcatattgcacatgtttttaaaaacgaggttagtgattaccttacaagtca 93  Q
    |||| ||||||||||||||||||||||||||||||||| ||||||||| ||||||| |||| |||||||||||||    
T  3716189 agggatgcctgttataaaagagtctcatattgcacatg-ttttaaaaatgaggttaatgatcaccttacaagtca 3716262  T

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Target: chr2; HSP #3
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 454 - 508
Target Start/End: Original strand, 3716678 - 3716732
Alignment:
Q  454 gtgtaaaaattaattttagaatcaaaagtttcaatttacaatttcaagctagaat 508  Q
    ||||||||||||||||||||||||||| ||| ||||||||| |||||||||||||    
T  3716678 gtgtaaaaattaattttagaatcaaaaattttaatttacaacttcaagctagaat 3716732  T

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Target: chr2; HSP #4
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 340 - 396
Target Start/End: Original strand, 10618869 - 10618925
Alignment:
Q  340 ttttgagtgaattgattatctaaagtttattttagctaaaaatgagttgaaggtaaa 396  Q
    |||| |||||||||||| | |||| || ||| ||||||||||||| |||||||||||    
T  10618869 tttttagtgaattgattttgtaaaattgattctagctaaaaatgaattgaaggtaaa 10618925  T

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Target: chr6 (Bit Score: 34; Significance: 0.0000000008; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 331 - 392
Target Start/End: Complemental strand, 9505945 - 9505884
Alignment:
Q  331 aaaaattagttttgagtgaattgattatctaaagtttattttagctaaaaatgagttgaagg 392  Q
    |||||||  |||||| |||||||||| | ||||||||||||| ||||||| |||||||||||    
T  9505945 aaaaattgattttgaatgaattgattctgtaaagtttattttggctaaaattgagttgaagg 9505884  T

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Target: chr4 (Bit Score: 33; Significance: 0.000000003; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 331 - 399
Target Start/End: Complemental strand, 48575559 - 48575491
Alignment:
Q  331 aaaaattagttttgagtgaattgattatctaaagtttattttagctaaaaatgagttgaaggtaaaatg 399  Q
    |||||||| |||||| |||||||||| | |||| || ||||| | ||||||||||||||| ||||||||    
T  48575559 aaaaattaattttgaatgaattgattttgtaaaattgatttttgataaaaatgagttgaatgtaaaatg 48575491  T

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Target: chr7 (Bit Score: 32; Significance: 0.00000001; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 340 - 399
Target Start/End: Original strand, 597862 - 597921
Alignment:
Q  340 ttttgagtgaattgattatctaaagtttattttagctaaaaatgagttgaaggtaaaatg 399  Q
    |||| |||||||||| ||| |||| || ||||| ||||||| ||||||||||||||||||    
T  597862 tttttagtgaattgagtatgtaaaattgattttggctaaaactgagttgaaggtaaaatg 597921  T

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Target: chr7; HSP #2
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 340 - 396
Target Start/End: Complemental strand, 40491744 - 40491688
Alignment:
Q  340 ttttgagtgaattgattatctaaagtttattttagctaaaaatgagttgaaggtaaa 396  Q
    ||||||||||||||||| | |||| || |||||  |||||| |||||||||||||||    
T  40491744 ttttgagtgaattgattctgtaaaattgattttgactaaaagtgagttgaaggtaaa 40491688  T

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Target: chr5 (Bit Score: 32; Significance: 0.00000001; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 341 - 400
Target Start/End: Original strand, 35138943 - 35139002
Alignment:
Q  341 tttgagtgaattgattatctaaagtttattttagctaaaaatgagttgaaggtaaaatga 400  Q
    |||||||||||||||||| |||| || ||| |  |||||| |||||||||||||||||||    
T  35138943 tttgagtgaattgattatgtaaacttgattctgtctaaaattgagttgaaggtaaaatga 35139002  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 340 - 396
Target Start/End: Complemental strand, 14299492 - 14299436
Alignment:
Q  340 ttttgagtgaattgattatctaaagtttattttagctaaaaatgagttgaaggtaaa 396  Q
    ||||||||||||||||| | |||| || ||| ||| ||||| |||||||||||||||    
T  14299492 ttttgagtgaattgattgtgtaaaattgattctagataaaagtgagttgaaggtaaa 14299436  T

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Target: chr3 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 339 - 396
Target Start/End: Original strand, 584711 - 584768
Alignment:
Q  339 gttttgagtgaattgattatctaaagtttattttagctaaaaatgagttgaaggtaaa 396  Q
    |||||||||||||||||| | |||| || ||||||||||||| | |||||||| ||||    
T  584711 gttttgagtgaattgattttgtaaaattgattttagctaaaattaagttgaagctaaa 584768  T

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