View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF20655_low_5 (Length: 506)
Name: NF20655_low_5
Description: NF20655
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20655_low_5 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 372; Significance: 0; HSPs: 5)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 372; E-Value: 0
Query Start/End: Original strand, 1 - 491
Target Start/End: Original strand, 54792826 - 54793314
Alignment:
| Q |
1 |
agagaaaaaggttttcactctatttattctcgtttataaaaagacaacactacaacagcgnnnnnnnnnnnnnaatcccttatcaatgttatcatccatt |
100 |
Q |
| |
|
|||| ||||||||| | ||||||||| ||||||||||||||||||||||||||||||||| |||| |||||||||||||||||||||| |
|
|
| T |
54792826 |
agagcaaaaggtttgccctctatttactctcgtttataaaaagacaacactacaacagcgtatgtttttttttaatcacttatcaatgttatcatccatt |
54792925 |
T |
|
| Q |
101 |
gcgaatgtcttctgctgatttggatttccaaactaccagagagaaaaagaagaggccttaaacaagatccttcaattggaaaagcaactagatgccaagc |
200 |
Q |
| |
|
|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
54792926 |
gcgagtgtcttctgctgatttggatttccaaactaccagagagaaaaagaagaggccttaaacaagatccttcaattggaaaagcaactagatgccaagc |
54793025 |
T |
|
| Q |
201 |
aaaaattagaaatggagattgaggaactaaaagggaaattgcaagttatgaaacatcttggagatcaagatgatgaagctattaagnnnnnnntggaaga |
300 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
|
|
| T |
54793026 |
aaaaattagaaatggagattgaggaactaaaagggaaattgcaagttatgaaacatcttggagatcaagatgatgaagctattaagaaaaaaatggaaga |
54793125 |
T |
|
| Q |
301 |
aatgagtactgaattggcagacaaaatagaaagcttggaggatatggagtctatgaatcaaaccctcattgtcaaggagcgccagagcaatgatgaactg |
400 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
54793126 |
aatgagtactgaattggcagacaaaatagaaagcttggaggatatggagtctatgaatcaaaccctcattgtcaaggagcgccagagcaatgatgaactg |
54793225 |
T |
|
| Q |
401 |
caggaagctcgtaaagagttgataaaggtatgatctcatttactttatctcannnnnnnnnnaattctatataaaaagaaatgttactcat |
491 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
|
|
| T |
54793226 |
caggaagctcgtaaagagttgataaaggtatgatctcatttactttatctca--ttttttttaattctatataaaaagaaatgttactcat |
54793314 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 306; E-Value: 1e-172
Query Start/End: Original strand, 79 - 491
Target Start/End: Original strand, 52285572 - 52285984
Alignment:
| Q |
79 |
cttatcaatgttatcatccattgcgaatgtcttctgctgatttggatttccaaactaccagagagaaaaagaagaggccttaaacaagatccttcaattg |
178 |
Q |
| |
|
|||||||||||||||||||||||| |||||||||| ||||| |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
52285572 |
cttatcaatgttatcatccattgcaaatgtcttctactgatgtggacttccaaactaccagagagaaaaagaagaggccttaaacaagatccttcaattg |
52285671 |
T |
|
| Q |
179 |
gaaaagcaactagatgccaagcaaaaattagaaatggagattgaggaactaaaagggaaattgcaagttatgaaacatcttggagatcaagatgatgaag |
278 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
52285672 |
gaaaagcaactagatgccaagcaaaaattagaaatggagattgaggaactaaaagggaaattgcaagttatgaaacatcttggagatcaagatgatgaag |
52285771 |
T |
|
| Q |
279 |
ctattaagnnnnnnntggaagaaatgagtactgaattggcagacaaaatagaaagcttggaggatatggagtctatgaatcaaaccctcattgtcaagga |
378 |
Q |
| |
|
|| ||||| |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |||||| |
|
|
| T |
52285772 |
ctgttaagaaaaaaatggaagaaatgagtactgaattggcagacaaaatagaaagtttggaggatatggagtctatgaatcaaaccctcattgacaagga |
52285871 |
T |
|
| Q |
379 |
gcgccagagcaatgatgaactgcaggaagctcgtaaagagttgataaaggtatgatctcatttactttatctcannnnnnnnnnaattctatataaaaag |
478 |
Q |
| |
|
||||||||||||||||||||| |||||||||||||||||||| ||| |||||||||||||||||||||||| |||||||||| ||||| |
|
|
| T |
52285872 |
gcgccagagcaatgatgaactacaggaagctcgtaaagagttaatagccgtatgatctcatttactttatctcgattttattttaattctatatcaaaag |
52285971 |
T |
|
| Q |
479 |
aaatgttactcat |
491 |
Q |
| |
|
||||||||||||| |
|
|
| T |
52285972 |
aaatgttactcat |
52285984 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 210; E-Value: 1e-115
Query Start/End: Original strand, 79 - 445
Target Start/End: Original strand, 800764 - 801130
Alignment:
| Q |
79 |
cttatcaatgttatcatccattgcgaatgtcttctgctgatttggatttccaaactaccagagagaaaaagaagaggccttaaacaagatccttcaattg |
178 |
Q |
| |
|
||||||||||||| ||||||||| ||||||||| ||||| ||||||||||||||||||||||||||| || ||||||||||||||||||||||| ||| |
|
|
| T |
800764 |
cttatcaatgttaccatccattgtgaatgtctttaactgatgtggatttccaaactaccagagagaaaaggaggaggccttaaacaagatccttcagttg |
800863 |
T |
|
| Q |
179 |
gaaaagcaactagatgccaagcaaaaattagaaatggagattgaggaactaaaagggaaattgcaagttatgaaacatcttggagatcaagatgatgaag |
278 |
Q |
| |
|
|||||||||||||||||||| |||||||| |||||||| ||||| ||||| | ||||||| ||||||||||||||||||||||||||||||||||| || |
|
|
| T |
800864 |
gaaaagcaactagatgccaaacaaaaattggaaatggaaattgaagaactcagagggaaactgcaagttatgaaacatcttggagatcaagatgatacag |
800963 |
T |
|
| Q |
279 |
ctattaagnnnnnnntggaagaaatgagtactgaattggcagacaaaatagaaagcttggaggatatggagtctatgaatcaaaccctcattgtcaagga |
378 |
Q |
| |
|
|||| ||| ||||||| |||| | | || |||| |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
|
|
| T |
800964 |
ctatcaagaaaaaaatggaagagatgaattcggagttggaagacaaaatagaaagcttggaggatatggagtctatgaattcaaccctcattgtcaagga |
801063 |
T |
|
| Q |
379 |
gcgccagagcaatgatgaactgcaggaagctcgtaaagagttgataaaggtatgatctcatttactt |
445 |
Q |
| |
|
|||||| |||||||||||||| ||||||||||||||||| || ||| | ||| |||||||||||||| |
|
|
| T |
801064 |
gcgccaaagcaatgatgaactacaggaagctcgtaaagaattaatagaagtacgatctcatttactt |
801130 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 138; E-Value: 6e-72
Query Start/End: Original strand, 113 - 279
Target Start/End: Complemental strand, 54776225 - 54776055
Alignment:
| Q |
113 |
tgctgatttggatttccaaactaccagagagaaaaagaagaggccttaaacaagatccttcaattggaaaagcaactagatgccaagcaaaaatta---- |
208 |
Q |
| |
|
||||||||||||||||||||||||| ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
|
|
| T |
54776225 |
tgctgatttggatttccaaactacccgagggaaaaagaagaggccttaaacaagatccttcaattggaaaagcaactagatgccaaacaaaaattagaaa |
54776126 |
T |
|
| Q |
209 |
gaaatggagattgaggaactaaaagggaaattgcaagttatgaaacatcttggagatcaagatgatgaagc |
279 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
|
|
| T |
54776125 |
gaaatggagattgaggaactaaaagggaaattgcaagttatgaaacatcttgaagatcaagatgatgaagc |
54776055 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 6 - 59
Target Start/End: Complemental strand, 54776292 - 54776239
Alignment:
| Q |
6 |
aaaaggttttcactctatttattctcgtttataaaaagacaacactacaacagc |
59 |
Q |
| |
|
||||||||| | ||||||||| ||||||||||||||||||||||||||| |||| |
|
|
| T |
54776292 |
aaaaggtttgccctctatttactctcgtttataaaaagacaacactacagcagc |
54776239 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University