View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF20655_low_6 (Length: 481)
Name: NF20655_low_6
Description: NF20655
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20655_low_6 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 421; Significance: 0; HSPs: 5)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 421; E-Value: 0
Query Start/End: Original strand, 14 - 467
Target Start/End: Complemental strand, 35034023 - 35033570
Alignment:
| Q |
14 |
aggccaagcaacaactctagaaactgannnnnnnctaatggaccttcacttccatatgcacaaaaaaccacagaaccattttcaaatcccttaagccatg |
113 |
Q |
| |
|
||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
35034023 |
aggccaagcaacaactctagaaactgatttttttctaatggaccttcacttccatatgcacaaaaaaccacagaaccattttcaaatcccttaagccatg |
35033924 |
T |
|
| Q |
114 |
aaatccatttttcctctagtgttgtatttgttggctcaggtaacacaggacctgaaagcagaacaggttttccaaaaacagtttcaatataatcagcata |
213 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
35033923 |
aaatccatttttcctctagtgttgtatttgttggctcaggtaacacaggacctgaaagcagaacaggttttccaaaaacagtttcaatataatcagcata |
35033824 |
T |
|
| Q |
214 |
tggtccatcaacttcattgaaacctttgaaaccaactgcatctgcagaggttgtaccaatgtgcaaacgatcaaataagaaaacaccacttccaaataca |
313 |
Q |
| |
|
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
|
|
| T |
35033823 |
tggtccatcaacttcattgcaacctttgaaaccaactgcatctgcagaggttgtaccaatgtgcaaacgatcaaataagaaaacaccacttccaaatgca |
35033724 |
T |
|
| Q |
314 |
attttccttgttgaagctaggaatcgaagttcgtgtttataaaacttgatgcaagaatcagggaaccctgaaggtggtttcatgatatcaacatcagtta |
413 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
35033723 |
attttccttgttgaagctaggaatcgaagttcgtgtttataaaacttgatgcaagaatcagggaaccctgaaggtggtttcatgatatcaacatcagtta |
35033624 |
T |
|
| Q |
414 |
aatctttccccagacttagtttttgtaaacatccgagataagctgttgatactg |
467 |
Q |
| |
|
|||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
35033623 |
aatctttccctagacttagtttttgtaaacatccgagataagctgttgatactg |
35033570 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 130; E-Value: 4e-67
Query Start/End: Original strand, 48 - 393
Target Start/End: Original strand, 35018671 - 35019016
Alignment:
| Q |
48 |
ctaatggaccttcacttccatatgcacaaaaaaccacagaaccattttcaaatcccttaagccatgaaatccatttttcctctagtgttgtatttgttgg |
147 |
Q |
| |
|
|||||||||||||||||||||| |||||||||| ||||||||||| || ||| |||||||||||| | |||||| ||||||| || | |||| ||| |
|
|
| T |
35018671 |
ctaatggaccttcacttccatacgcacaaaaaatcacagaaccatgtttgaattccttaagccatgttaaccatttctcctctaaagtagcttttggtgg |
35018770 |
T |
|
| Q |
148 |
ctcaggtaacacaggacctgaaagcagaacaggttttccaaaaacagtttcaatataatcagcatatggtccatcaacttcattgaaacctttgaaacca |
247 |
Q |
| |
|
||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||||| | ||||||| || || ||||||||||| | |
|
|
| T |
35018771 |
ctcaggtaacagaggacctgaaagcagaacaggttttccaaaaacagtttcaagataatcagcatatagaccatcaatctctctgcaacctttgaaagaa |
35018870 |
T |
|
| Q |
248 |
actgcatctgcagaggttgtaccaatgtgcaaacgatcaaataagaaaacaccacttccaaatacaattttccttgttgaagctaggaatcgaagttcgt |
347 |
Q |
| |
|
|||||||||| ||| |||| || ||| | ||||| | | ||||||||||| |||||| | |||||||| |||||||||||||| |||||||| | |
|
|
| T |
35018871 |
actgcatctgaagactttgtgcctgtgtcaacgcgatcgtacagtaaaacaccactgccaaattctattttcctggttgaagctaggaagcgaagttcat |
35018970 |
T |
|
| Q |
348 |
gtttataaaacttgatgcaagaatcagggaaccctgaaggtggttt |
393 |
Q |
| |
|
|| || |||||||||| | |||||||||||||||| ||||||||| |
|
|
| T |
35018971 |
gtgaatgaaacttgatggatgaatcagggaaccctgcaggtggttt |
35019016 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 130; E-Value: 4e-67
Query Start/End: Original strand, 17 - 403
Target Start/End: Complemental strand, 35027011 - 35026625
Alignment:
| Q |
17 |
ccaagcaacaactctagaaactgannnnnnnctaatggaccttcacttccatatgcacaaaaaaccacagaaccattttcaaatcccttaagccatgaaa |
116 |
Q |
| |
|
||||||||||||||| |||||||| ||||||||||||||||||||||||||||||| |||||||||||| || ||||||||||||||||| |
|
|
| T |
35027011 |
ccaagcaacaactcttgaaactgatttttttctaatggaccttcacttccatatgcacaaaacaccacagaaccaggtttgaatcccttaagccatgatt |
35026912 |
T |
|
| Q |
117 |
tccatttttcctctagtgttgtatttgttggctcaggtaacacaggacctgaaagcagaacaggttttccaaaaacagtttcaatataatcagcatatgg |
216 |
Q |
| |
|
||||||||| |||| ||||| |||| || |||||||||| |||||||||||| ||| |||||||||| ||| | || ||| | | ||||||||||| |
|
|
| T |
35026911 |
cccatttttcatctaaagttgtttttggtgtttcaggtaacaaaggacctgaaagtagataaggttttccataaaaatttccaagaaattcagcatatgg |
35026812 |
T |
|
| Q |
217 |
tccatcaacttcattgaaacctttgaaaccaactgcatctgcagaggttgtaccaatgtgcaaacgatcaaataagaaaacaccacttccaaatacaatt |
316 |
Q |
| |
|
| |||||| ||| ||| ||||||||||||||| |||||| || | ||||||| || ||||||||||| |||| || ||||||||||| || |||| | |
|
|
| T |
35026811 |
ttcatcaagttctttgcaacctttgaaaccaattgcatcagctaaacttgtacctatatgcaaacgatcgtataaaaatacaccacttccgaagacaagt |
35026712 |
T |
|
| Q |
317 |
ttccttgttgaagctaggaatcgaagttcgtgtttataaaacttgatgcaagaatcagggaaccctgaaggtggtttcatgatatca |
403 |
Q |
| |
|
||||||||||||| ||| ||| ||||||| |||| ||||| |||||| || ||||||| ||||||||||||||||| ||| |||| |
|
|
| T |
35026711 |
ttccttgttgaagatagaaattgaagttcatgttgataaagcttgatagaaccatcagggtaccctgaaggtggtttcttgagatca |
35026625 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 118; E-Value: 5e-60
Query Start/End: Original strand, 56 - 393
Target Start/End: Original strand, 35011653 - 35011990
Alignment:
| Q |
56 |
ccttcacttccatatgcacaaaaaaccacagaaccattttcaaatcccttaagccatgaaatccatttttcctctagtgttgtatttgttggctcaggta |
155 |
Q |
| |
|
|||||||||||||| |||||||||||||||||||||| || ||||||| |||||||| | |||||||||||||| || | |||| || ||| |||| |
|
|
| T |
35011653 |
ccttcacttccatacgcacaaaaaaccacagaaccatgtttgaatccctcaagccatgttaaccatttttcctctaaagtagattttggtgcctcgggta |
35011752 |
T |
|
| Q |
156 |
acacaggacctgaaagcagaacaggttttccaaaaacagtttcaatataatcagcatatggtccatcaacttcattgaaacctttgaaaccaactgcatc |
255 |
Q |
| |
|
| | ||||||||||||||||||||||||||||||||||||||||| ||||||||||||| ||||||||| ||| || | ||||||||| ||||||||| |
|
|
| T |
35011753 |
ataaaggacctgaaagcagaacaggttttccaaaaacagtttcaagataatcagcatatagtccatcaatttctctgcagcctttgaaagaaactgcatc |
35011852 |
T |
|
| Q |
256 |
tgcagaggttgtaccaatgtgcaaacgatcaaataagaaaacaccacttccaaatacaattttccttgttgaagctaggaatcgaagttcgtgtttataa |
355 |
Q |
| |
|
|| | | ||||||| ||| | |||||| | || ||||||||||| |||||| | ||||||||||||||||||||| |||||||| ||| || | |
|
|
| T |
35011853 |
tgaaaactttgtaccggtgtcaacgcgatcatacaataaaacaccactgccaaattcttgtttccttgttgaagctaggaagcgaagttcatgtgaatga |
35011952 |
T |
|
| Q |
356 |
aacttgatgcaagaatcagggaaccctgaaggtggttt |
393 |
Q |
| |
|
|| ||||| | |||||||||||||||| ||||||||| |
|
|
| T |
35011953 |
aatttgatcgatgaatcagggaaccctgtaggtggttt |
35011990 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 62 - 415
Target Start/End: Original strand, 34998174 - 34998524
Alignment:
| Q |
62 |
cttccatatgcacaaaaaaccacagaaccattttcaaatcccttaagccatgaaatccatttttcctctagtgttgtatttgttggctcaggtaacacag |
161 |
Q |
| |
|
||||||||||||||| ||||||| |||||| || ||||||||||||| | || |||||||||||||| || | |||| || ||||||||| | || |
|
|
| T |
34998174 |
cttccatatgcacaataaaccacgaaaccatgtttgaatcccttaagccgttaa--ccatttttcctctaaagtagattttggtgcctcaggtaataaag |
34998271 |
T |
|
| Q |
162 |
gacctgaaagcagaacaggttttccaaaaacagtttcaatataatcagcatatggtccatcaacttcattgaaacctttgaaaccaactgcatctgcaga |
261 |
Q |
| |
|
|||||||||||||||||||||| || |||||||||| | ||| |||||||| ||||||| ||| || ||||||||||| |||||||||||| | | |
|
|
| T |
34998272 |
gacctgaaagcagaacaggtttacccaaaacagtttgtagatattcagcatacaaaccatcaatttctctgcaacctttgaaagcaactgcatctgaaaa |
34998371 |
T |
|
| Q |
262 |
ggttgtaccaatgtgcaaacgatcaaataagaaaacaccacttccaaatacaattttccttgttgaagctaggaatcgaagttcgtgtttataaaacttg |
361 |
Q |
| |
|
|||| || ||| | ||||| ||| |||||||||||||||||| | | |||| || ||| ||||| ||||||||| || |||||||||| |
|
|
| T |
34998372 |
ctttgtgcctctgtcagagcgatcgtgtaataaaacaccacttccaaattctagtttctgtg-ggaaactagggctcgaagttcatgcgaataaaacttg |
34998470 |
T |
|
| Q |
362 |
atgcaagaatcagggaaccctgaaggtggtttcatgatatcaacatcagttaaa |
415 |
Q |
| |
|
||| | ||||||||||||||||||||||||||||||| ||||| ||||||||| |
|
|
| T |
34998471 |
atggatgaatcagggaaccctgaaggtggtttcatgagatcaaattcagttaaa |
34998524 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University