View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20656_high_20 (Length: 228)
Name: NF20656_high_20
Description: NF20656
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20656_high_20 |
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Alignment Details
Target: chr1 (Bit Score: 185; Significance: 1e-100; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 185; E-Value: 1e-100
Query Start/End: Original strand, 17 - 209
Target Start/End: Original strand, 9467369 - 9467561
Alignment:
| Q |
17 |
catttcaagcatcctatgtcaaaatttgttcctgaccatgtcaataagagacggttgtcttgaatgctatatgcagaaaatggagaaacacggtcaaaca |
116 |
Q |
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| T |
9467369 |
catttcaagcatcctatgtcaaaatttgttcctgaccatgtcaataagagacggttgtcttgaatgctatatgcagaaaatggagaaacacggtcaaaca |
9467468 |
T |
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| Q |
117 |
ttttggtgcagtatactaatacgtcagattcaacgatagcttcttgatctgaatcaacgacataaattgggcaagatatgatgtcttgtgttc |
209 |
Q |
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| T |
9467469 |
gtttggtgcagtatactaatacgtcagattcaacgatagtttcttgatctgaatcaacgacataaattgggcaagatatgatgtcttgtgttc |
9467561 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 17 - 204
Target Start/End: Original strand, 9258146 - 9258330
Alignment:
| Q |
17 |
catttcaagcatcctatgtcaaaatttgttcctgaccatgtcaataagagacggttgtcttgaatgctatatgcagaaaatggagaaacacggtcaaaca |
116 |
Q |
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|||||||||||||||||||||||||||||||| ||||||||||| |||||||||||| |||||| || ||||| ||||| ||||| | ||||||| |
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| T |
9258146 |
catttcaagcatcctatgtcaaaatttgttcccgaccatgtcaacgagagacggttgtattgaatagtagatgcatcaaatgaggaaacgtgatcaaaca |
9258245 |
T |
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| Q |
117 |
ttttggtgcagtatactaatacgtcagattcaacgatagcttcttgatctgaatcaacgacataaattgggcaagatatgatgtcttg |
204 |
Q |
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| T |
9258246 |
atttgatgcagtatactaa---gtcagattcaacgatattttcaaggtctgaatcggcgacataaattggacaagatatcatatcttg |
9258330 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 17 - 66
Target Start/End: Complemental strand, 9299564 - 9299515
Alignment:
| Q |
17 |
catttcaagcatcctatgtcaaaatttgttcctgaccatgtcaataagag |
66 |
Q |
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| T |
9299564 |
catttcaagcatcctaagtcaaaatttgttccataccatttcaatgagag |
9299515 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 47; Significance: 6e-18; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 17 - 135
Target Start/End: Complemental strand, 9170966 - 9170848
Alignment:
| Q |
17 |
catttcaagcatcctatgtcaaaatttgttcctgaccatgtcaataagagacggttgtcttgaatgctatatgcagaaaatggagaaacacggtcaaaca |
116 |
Q |
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||||||||||||| |||||||||||||||||| |||||||||| |||| |||||| ||||||| || | ||||| ||| ||||| ||||||| ||| |
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| T |
9170966 |
catttcaagcatcttatgtcaaaatttgttccagaccatgtcatcgggagatggttgtattgaatgttaaacgcagagaatagagaactacggtcagaca |
9170867 |
T |
|
| Q |
117 |
ttttggtgcagtatactaa |
135 |
Q |
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|||| ||||||||||||| |
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| T |
9170866 |
gtttgatgcagtatactaa |
9170848 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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